Wall clock time and date at job start Mon Mar 30 2020 02:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47185 * 2 1 4 4 C 1.52997 * 109.47458 * 120.00436 * 2 1 3 5 5 H 1.09007 * 109.46824 * 294.55457 * 4 2 1 6 6 F 1.39899 * 109.47287 * 54.55374 * 4 2 1 7 7 C 1.50700 * 109.47267 * 174.56125 * 4 2 1 8 8 C 1.38653 * 119.87430 * 293.84037 * 7 4 2 9 9 C 1.38613 * 120.50475 * 180.02562 * 8 7 4 10 10 C 1.37639 * 120.24705 * 0.02562 * 9 8 7 11 11 C 1.40701 * 119.74447 * 359.97438 * 10 9 8 12 12 C 1.41391 * 120.24794 * 180.02562 * 11 10 9 13 13 H 1.07990 * 120.00619 * 208.08418 * 12 11 10 14 14 C 1.39949 * 119.99512 * 28.09214 * 12 11 10 15 15 N 1.30822 * 120.00374 * 14.67861 * 14 12 11 16 16 Si 1.86800 * 119.99807 * 194.68841 * 14 12 11 17 17 H 1.48509 * 109.47333 * 89.99466 * 16 14 12 18 18 H 1.48506 * 109.47329 * 209.99303 * 16 14 12 19 19 H 1.48497 * 109.47350 * 329.99757 * 16 14 12 20 20 C 1.37597 * 119.87907 * 113.86821 * 7 4 2 21 21 H 1.08997 * 109.47030 * 304.28434 * 1 2 3 22 22 H 1.09004 * 109.47148 * 64.28255 * 1 2 3 23 23 H 1.08998 * 109.47380 * 184.28493 * 1 2 3 24 24 H 1.09003 * 109.47343 * 240.00308 * 2 1 3 25 25 H 1.09004 * 109.47287 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47307 * 300.00574 * 3 2 1 27 27 H 1.09006 * 109.46899 * 60.00431 * 3 2 1 28 28 H 1.08006 * 119.74796 * 359.75074 * 8 7 4 29 29 H 1.07994 * 119.87882 * 179.97438 * 9 8 7 30 30 H 1.07997 * 120.12898 * 179.97438 * 10 9 8 31 31 H 0.96999 * 120.00212 * 179.97438 * 15 14 12 32 32 H 1.08006 * 120.12568 * 359.97438 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.7585 -0.1543 2.1365 6 9 1.4744 -1.9992 1.3134 7 6 3.5410 -0.8390 1.1836 8 6 4.1299 -1.6287 0.2079 9 6 5.5091 -1.7467 0.1360 10 6 6.3099 -1.0797 1.0351 11 6 5.7233 -0.2754 2.0294 12 6 6.5358 0.4149 2.9581 13 1 6.1560 0.6431 3.9430 14 6 7.8322 0.8026 2.6010 15 7 8.1955 0.7915 1.3442 16 14 9.0441 1.3356 3.9188 17 1 9.7989 0.1526 4.4049 18 1 9.9913 2.3270 3.3485 19 1 8.3056 1.9509 5.0507 20 6 4.3219 -0.1628 2.0926 21 1 -0.3633 0.5789 0.8491 22 1 -0.3634 0.4460 -0.9259 23 1 -0.3634 -1.0248 0.0768 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 3.5091 -2.1596 -0.4987 29 1 5.9571 -2.3649 -0.6279 30 1 7.3842 -1.1733 0.9775 31 1 9.0939 1.0606 1.0967 32 1 3.8611 0.4519 2.8518 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260314541.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:30 Heat of formation + Delta-G solvation = -59.033948 kcal Electronic energy + Delta-G solvation = -14924.926622 eV Core-core repulsion = 12377.386074 eV Total energy + Delta-G solvation = -2547.540548 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.05339 -37.77429 -35.36537 -33.53325 -30.11455 -29.85843 -26.76631 -25.43524 -25.00072 -21.09638 -20.59422 -19.48093 -17.16208 -15.76636 -15.49527 -14.96840 -14.78781 -14.40337 -13.84721 -13.20186 -13.05094 -12.46044 -12.36833 -12.30559 -11.91971 -11.64338 -11.23832 -11.20307 -10.97677 -10.80168 -10.63875 -10.53772 -10.44954 -10.07843 -9.48320 -9.38725 -9.19791 -7.51106 -7.35353 -6.75129 -4.39131 2.75647 2.86753 3.07057 3.10401 3.19329 3.93312 4.59246 4.91465 5.10625 5.23941 5.47420 5.65040 5.70317 5.76883 5.93814 6.03577 6.13206 6.19737 6.29406 6.41542 6.47791 6.58030 6.70646 6.86851 7.03440 7.18997 7.32422 7.52043 7.81950 8.00698 8.02997 8.22757 8.60132 8.86907 8.92866 10.21024 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042772 B = 0.007162 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.482446 B = 3908.388189 C = 4072.085427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.144 3.856 5 H 0.076 0.924 6 F -0.218 7.218 7 C -0.100 4.100 8 C -0.213 4.213 9 C -0.109 4.109 10 C -0.152 4.152 11 C 0.109 3.891 12 C -0.467 4.467 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.800 5.800 16 Si 0.909 3.091 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.202 4.202 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.280 0.720 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 0.603 -1.362 7.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.200 4.200 4 C 0.108 3.892 5 H 0.094 0.906 6 F -0.198 7.198 7 C -0.101 4.101 8 C -0.232 4.232 9 C -0.128 4.128 10 C -0.171 4.171 11 C 0.106 3.894 12 C -0.497 4.497 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.426 5.426 16 Si 0.733 3.267 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.222 4.222 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.135 0.865 31 H 0.091 0.909 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.735 0.645 -1.509 6.932 hybrid contribution 0.652 0.226 0.462 0.830 sum -6.083 0.871 -1.047 6.234 Atomic orbital electron populations 1.21849 0.95233 1.02000 1.01493 1.21647 0.95539 0.97590 0.98520 1.21735 1.02838 0.94357 1.01078 1.20438 0.91139 0.79170 0.98489 0.90591 1.92750 1.86475 1.42948 1.97670 1.19491 0.92114 1.00472 0.97998 1.20140 0.94336 1.06584 1.02154 1.20678 0.93452 0.99857 0.98774 1.21357 0.99396 0.98432 0.97921 1.17565 0.90758 0.89350 0.91687 1.19536 0.97280 1.32666 1.00237 0.90485 1.25869 0.98795 0.93644 0.95806 1.69800 1.19749 1.35979 1.17107 0.86308 0.79963 0.78985 0.81410 1.19332 1.20351 1.18676 1.20832 0.94076 1.05584 1.01691 0.92811 0.92679 0.92310 0.90230 0.91030 0.92896 0.92872 0.89380 0.89231 0.86546 0.90943 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.09 37.16 0.34 -1.60 16 2 C -0.11 -1.81 2.68 -90.62 -0.24 -2.05 16 3 C -0.14 -2.19 9.01 37.16 0.33 -1.86 16 4 C 0.14 2.66 3.10 -27.88 -0.09 2.57 16 5 H 0.08 1.32 7.88 -51.92 -0.41 0.91 16 6 F -0.22 -4.24 16.11 2.25 0.04 -4.20 16 7 C -0.10 -2.22 4.03 -104.70 -0.42 -2.64 16 8 C -0.21 -4.81 9.08 -39.29 -0.36 -5.17 16 9 C -0.11 -2.58 10.02 -39.66 -0.40 -2.98 16 10 C -0.15 -3.94 8.67 -38.87 -0.34 -4.27 16 11 C 0.11 2.87 5.54 -106.82 -0.59 2.28 16 12 C -0.47 -12.32 9.05 -37.74 -0.34 -12.66 16 13 H 0.08 1.96 7.89 -52.49 -0.41 1.54 16 14 C 0.08 1.90 5.18 -17.34 -0.09 1.81 16 15 N -0.80 -20.66 11.02 55.55 0.61 -20.05 16 16 Si 0.91 18.66 29.58 -169.99 -5.03 13.63 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 C -0.20 -4.87 9.41 -38.87 -0.37 -5.24 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.78 7.54 -51.93 -0.39 0.39 16 24 H 0.08 1.32 7.60 -51.93 -0.39 0.93 16 25 H 0.07 1.30 7.39 -51.93 -0.38 0.92 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.09 1.84 7.91 -52.48 -0.42 1.43 16 29 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.12 3.11 6.32 -52.49 -0.33 2.78 16 31 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 32 H 0.09 2.11 7.95 -52.48 -0.42 1.70 16 LS Contribution 272.29 15.07 4.10 4.10 Total: -1.00 -26.91 272.29 -7.24 -34.15 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.41 Total: 4.17 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: -2.56 Total: -31.81 kcal Atomic # 7 Polarization: -20.66 SS G_CDS: 0.61 Total: -20.05 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.04 Total: -4.20 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.91 -7.24 -34.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260314541.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.885 kcal (2) G-P(sol) polarization free energy of solvation -26.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds