Wall clock time and date at job start Mon Mar 30 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48535 * 111.00043 * 2 1 4 4 C 1.54937 * 103.22409 * 159.71795 * 3 2 1 5 5 C 1.54600 * 102.92410 * 322.58543 * 4 3 2 6 6 C 1.47906 * 110.99775 * 117.39636 * 2 1 3 7 7 H 1.09004 * 110.08075 * 333.60052 * 6 2 1 8 8 C 1.50693 * 109.91857 * 94.80146 * 6 2 1 9 9 C 1.35939 * 126.01052 * 242.59367 * 8 6 2 10 10 O 1.34604 * 107.35687 * 179.97438 * 9 8 6 11 11 C 1.34945 * 107.60735 * 359.97438 * 10 9 8 12 12 C 1.39805 * 125.79596 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99908 * 180.02562 * 12 11 10 14 14 C 1.40337 * 119.99706 * 0.02886 * 12 11 10 15 15 N 1.30629 * 120.00336 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99627 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47236 * 89.99709 * 16 14 12 18 18 H 1.48505 * 109.46765 * 209.99659 * 16 14 12 19 19 H 1.48505 * 109.47048 * 329.99350 * 16 14 12 20 20 N 1.32810 * 108.40726 * 359.97438 * 11 10 9 21 21 H 1.09007 * 109.47003 * 302.60502 * 1 2 3 22 22 H 1.09001 * 109.46621 * 62.60321 * 1 2 3 23 23 H 1.08997 * 109.47563 * 182.60515 * 1 2 3 24 24 H 1.08999 * 110.66617 * 41.28580 * 3 2 1 25 25 H 1.08995 * 110.80724 * 278.22183 * 3 2 1 26 26 H 1.09004 * 110.72035 * 204.22630 * 4 3 2 27 27 H 1.08997 * 110.72566 * 80.94829 * 4 3 2 28 28 H 1.09001 * 110.30885 * 263.04152 * 5 4 3 29 29 H 1.09000 * 110.38874 * 140.91505 * 5 4 3 30 30 H 1.07990 * 126.32235 * 0.21068 * 9 8 6 31 31 H 0.97001 * 119.99515 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2106 0.5228 5 6 3.2982 0.1053 1.5932 6 6 1.9990 -0.6354 1.2260 7 1 1.2770 -0.5432 2.0374 8 6 2.2937 -2.0898 0.9641 9 6 1.6989 -3.1484 1.5753 10 8 2.2419 -4.2669 1.0596 11 6 3.1581 -3.8908 0.1430 12 6 3.9493 -4.7517 -0.6233 13 1 4.6564 -4.3475 -1.3326 14 6 3.8246 -6.1412 -0.4710 15 7 2.9697 -6.6302 0.3872 16 14 4.8813 -7.2916 -1.4956 17 1 6.1473 -7.5760 -0.7732 18 1 4.1480 -8.5619 -1.7280 19 1 5.1885 -6.6516 -2.7999 20 7 3.1805 -2.5638 0.0926 21 1 -0.3633 0.5538 0.8658 22 1 -0.3632 0.4729 -0.9124 23 1 -0.3634 -1.0265 0.0467 24 1 1.4238 2.0205 0.6729 25 1 2.0041 1.8004 -1.0084 26 1 3.8123 2.1352 0.9717 27 1 4.1116 0.8836 -0.2786 28 1 3.2136 0.5485 2.5854 29 1 4.1467 -0.5780 1.5558 30 1 0.9297 -3.1009 2.3317 31 1 2.8839 -7.5906 0.4926 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260327740.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:28 Heat of formation + Delta-G solvation = 12.401907 kcal Electronic energy + Delta-G solvation = -15142.705311 eV Core-core repulsion = 12618.182415 eV Total energy + Delta-G solvation = -2524.522895 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.90324 -38.40459 -33.66216 -32.68882 -31.71766 -29.89139 -27.70079 -25.48042 -25.01661 -21.22633 -20.76431 -20.63032 -18.88708 -17.40550 -15.49337 -15.39984 -15.16239 -14.42143 -14.32627 -13.81030 -13.32635 -13.21614 -12.72080 -12.28350 -11.94033 -11.47733 -11.30393 -11.20366 -11.12254 -10.85933 -10.72757 -10.41002 -10.38305 -10.16151 -9.52318 -9.07941 -8.37916 -7.98592 -7.33109 -6.84292 -4.58192 2.92542 3.06478 3.12523 3.37397 3.89551 4.08568 4.58754 4.97188 5.07268 5.12686 5.34155 5.42290 5.53252 5.65453 5.70065 5.78467 5.85003 6.11759 6.14544 6.20117 6.21725 6.49341 6.69787 6.76696 6.96974 7.09839 7.30489 7.50158 7.79399 8.02143 8.29984 8.61798 8.79482 9.98160 10.19581 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.046929 B = 0.007169 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.498869 B = 3904.789940 C = 4099.332580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.504 5.504 3 C 0.036 3.964 4 C -0.118 4.118 5 C -0.118 4.118 6 C 0.156 3.844 7 H 0.051 0.949 8 C 0.033 3.967 9 C -0.221 4.221 10 O -0.186 6.186 11 C 0.343 3.657 12 C -0.431 4.431 13 H 0.108 0.892 14 C 0.070 3.930 15 N -0.780 5.780 16 Si 0.929 3.071 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.258 1.258 20 N -0.587 5.587 21 H 0.020 0.980 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.036 0.964 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.168 0.832 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 8.505 1.375 8.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.228 5.228 3 C -0.092 4.092 4 C -0.156 4.156 5 C -0.157 4.157 6 C 0.048 3.952 7 H 0.069 0.931 8 C -0.093 4.093 9 C -0.296 4.296 10 O -0.077 6.077 11 C 0.158 3.842 12 C -0.467 4.467 13 H 0.126 0.874 14 C -0.152 4.152 15 N -0.408 5.408 16 Si 0.753 3.247 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.182 1.182 20 N -0.320 5.320 21 H 0.039 0.961 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.055 0.945 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.185 0.815 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.323 8.346 0.588 8.471 hybrid contribution -0.643 -0.561 0.933 1.264 sum -1.966 7.785 1.521 8.172 Atomic orbital electron populations 1.22467 0.88468 1.02061 0.99830 1.64567 1.07208 1.13400 1.37584 1.23207 0.95414 0.90116 1.00467 1.22421 0.96515 0.97693 0.98977 1.22360 0.98555 0.97391 0.97369 1.20426 0.95116 0.89940 0.89756 0.93092 1.20905 0.97488 0.93519 0.97387 1.24019 1.09754 0.85170 1.10613 1.84833 1.45078 1.32048 1.45766 1.22165 0.86942 0.88304 0.86817 1.18353 1.19446 0.88834 1.20021 0.87377 1.26092 0.94980 0.99243 0.94838 1.69721 1.28177 1.15106 1.27818 0.85963 0.79663 0.78596 0.80508 1.19167 1.20059 1.18172 1.70764 1.27038 1.07184 1.26985 0.96142 0.91759 0.91264 0.94541 0.90496 0.91792 0.90383 0.92368 0.89926 0.81517 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.40 60.07 0.56 0.89 16 2 N -0.50 -9.33 5.17 -232.16 -1.20 -10.53 16 3 C 0.04 0.53 6.56 -1.90 -0.01 0.52 16 4 C -0.12 -1.78 7.06 -24.87 -0.18 -1.95 16 5 C -0.12 -2.05 6.55 -25.37 -0.17 -2.22 16 6 C 0.16 3.05 2.95 -67.80 -0.20 2.85 16 7 H 0.05 0.91 7.72 -51.93 -0.40 0.51 16 8 C 0.03 0.82 5.79 -82.88 -0.48 0.34 16 9 C -0.22 -5.58 12.12 29.91 0.36 -5.22 16 10 O -0.19 -5.45 9.06 3.09 0.03 -5.42 16 11 C 0.34 10.13 7.66 -16.54 -0.13 10.01 16 12 C -0.43 -12.13 9.45 -38.21 -0.36 -12.49 16 13 H 0.11 2.91 7.85 -52.49 -0.41 2.50 16 14 C 0.07 1.82 5.50 -17.27 -0.10 1.73 16 15 N -0.78 -21.13 11.98 55.57 0.67 -20.46 16 16 Si 0.93 18.93 29.56 -169.99 -5.03 13.91 16 17 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 18 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 N -0.59 -16.47 11.21 -9.64 -0.11 -16.58 16 21 H 0.02 0.28 8.01 -51.93 -0.42 -0.14 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.04 0.48 7.96 -51.93 -0.41 0.06 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 30 H 0.17 3.55 8.06 -52.49 -0.42 3.13 16 31 H 0.28 6.88 8.29 -40.82 -0.34 6.54 16 LS Contribution 265.66 15.07 4.00 4.00 Total: -1.00 -31.49 265.66 -6.46 -37.95 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.13 Total: 2.69 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.69 Total: -5.56 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -0.64 Total: -47.57 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: 0.03 Total: -5.42 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.49 -6.46 -37.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260327740.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.348 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds