Wall clock time and date at job start Mon Mar 30 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48535 * 111.00043 * 2 1 4 4 C 1.54937 * 103.22409 * 159.71795 * 3 2 1 5 5 C 1.54600 * 102.92410 * 322.58543 * 4 3 2 6 6 C 1.47906 * 110.99775 * 117.39636 * 2 1 3 7 7 H 1.09004 * 110.08075 * 333.60052 * 6 2 1 8 8 C 1.50693 * 109.91857 * 94.80146 * 6 2 1 9 9 C 1.35939 * 126.01052 * 242.59367 * 8 6 2 10 10 O 1.34604 * 107.35687 * 179.97438 * 9 8 6 11 11 C 1.34945 * 107.60735 * 359.97438 * 10 9 8 12 12 C 1.39805 * 125.79596 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99908 * 180.02562 * 12 11 10 14 14 C 1.40337 * 119.99706 * 0.02886 * 12 11 10 15 15 N 1.30629 * 120.00336 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99627 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47236 * 89.99709 * 16 14 12 18 18 H 1.48505 * 109.46765 * 209.99659 * 16 14 12 19 19 H 1.48505 * 109.47048 * 329.99350 * 16 14 12 20 20 N 1.32810 * 108.40726 * 359.97438 * 11 10 9 21 21 H 1.09007 * 109.47003 * 302.60502 * 1 2 3 22 22 H 1.09001 * 109.46621 * 62.60321 * 1 2 3 23 23 H 1.08997 * 109.47563 * 182.60515 * 1 2 3 24 24 H 1.08999 * 110.66617 * 41.28580 * 3 2 1 25 25 H 1.08995 * 110.80724 * 278.22183 * 3 2 1 26 26 H 1.09004 * 110.72035 * 204.22630 * 4 3 2 27 27 H 1.08997 * 110.72566 * 80.94829 * 4 3 2 28 28 H 1.09001 * 110.30885 * 263.04152 * 5 4 3 29 29 H 1.09000 * 110.38874 * 140.91505 * 5 4 3 30 30 H 1.07990 * 126.32235 * 0.21068 * 9 8 6 31 31 H 0.97001 * 119.99515 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2106 0.5228 5 6 3.2982 0.1053 1.5932 6 6 1.9990 -0.6354 1.2260 7 1 1.2770 -0.5432 2.0374 8 6 2.2937 -2.0898 0.9641 9 6 1.6989 -3.1484 1.5753 10 8 2.2419 -4.2669 1.0596 11 6 3.1581 -3.8908 0.1430 12 6 3.9493 -4.7517 -0.6233 13 1 4.6564 -4.3475 -1.3326 14 6 3.8246 -6.1412 -0.4710 15 7 2.9697 -6.6302 0.3872 16 14 4.8813 -7.2916 -1.4956 17 1 6.1473 -7.5760 -0.7732 18 1 4.1480 -8.5619 -1.7280 19 1 5.1885 -6.6516 -2.7999 20 7 3.1805 -2.5638 0.0926 21 1 -0.3633 0.5538 0.8658 22 1 -0.3632 0.4729 -0.9124 23 1 -0.3634 -1.0265 0.0467 24 1 1.4238 2.0205 0.6729 25 1 2.0041 1.8004 -1.0084 26 1 3.8123 2.1352 0.9717 27 1 4.1116 0.8836 -0.2786 28 1 3.2136 0.5485 2.5854 29 1 4.1467 -0.5780 1.5558 30 1 0.9297 -3.1009 2.3317 31 1 2.8839 -7.5906 0.4926 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260327740.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:28 Heat of formation + Delta-G solvation = -12.261766 kcal Electronic energy + Delta-G solvation = -15143.774808 eV Core-core repulsion = 12618.182415 eV Total energy + Delta-G solvation = -2525.592392 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.95073 -39.77567 -35.68093 -34.69250 -33.00761 -31.74305 -29.41010 -27.26858 -26.42341 -22.89443 -22.69989 -21.97882 -20.70012 -19.34404 -17.38090 -16.79469 -16.75024 -16.43263 -16.11269 -15.27457 -14.98858 -14.53870 -14.34045 -13.84785 -13.31081 -13.18712 -12.98596 -12.83946 -12.57904 -12.40183 -12.16491 -11.98220 -11.90339 -11.55133 -11.42775 -11.05085 -10.48226 -9.39702 -9.26193 -8.81304 -6.69798 1.13092 1.38882 1.55797 1.58566 2.18241 2.22873 3.01820 3.13142 3.34726 3.71597 3.81785 4.04010 4.16595 4.30683 4.48829 4.53251 4.64377 4.76836 4.77990 4.92191 4.97013 5.02995 5.07162 5.11957 5.23794 5.39462 5.79052 5.89286 6.10148 6.18791 6.25049 6.57158 6.69107 7.91123 8.24211 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.046929 B = 0.007169 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.498869 B = 3904.789940 C = 4099.332580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.040 3.960 4 C -0.113 4.113 5 C -0.118 4.118 6 C 0.154 3.846 7 H 0.071 0.929 8 C 0.034 3.966 9 C -0.246 4.246 10 O -0.213 6.213 11 C 0.307 3.693 12 C -0.464 4.464 13 H 0.108 0.892 14 C 0.027 3.973 15 N -0.815 5.815 16 Si 1.014 2.986 17 H -0.255 1.255 18 H -0.260 1.260 19 H -0.253 1.253 20 N -0.611 5.611 21 H 0.046 0.954 22 H 0.080 0.920 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.201 0.799 31 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 9.501 1.314 9.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.086 4.086 4 C -0.151 4.151 5 C -0.156 4.156 6 C 0.045 3.955 7 H 0.089 0.911 8 C -0.092 4.092 9 C -0.319 4.319 10 O -0.106 6.106 11 C 0.123 3.877 12 C -0.499 4.499 13 H 0.126 0.874 14 C -0.191 4.191 15 N -0.443 5.443 16 Si 0.831 3.169 17 H -0.179 1.179 18 H -0.184 1.184 19 H -0.176 1.176 20 N -0.345 5.345 21 H 0.065 0.935 22 H 0.099 0.901 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.218 0.782 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.361 9.373 0.549 9.487 hybrid contribution -0.693 -0.813 0.986 1.454 sum -2.054 8.560 1.535 8.936 Atomic orbital electron populations 1.22459 0.87045 1.01172 1.01858 1.64432 1.08894 1.15882 1.37273 1.23275 0.95021 0.88508 1.01833 1.22423 0.96657 0.98321 0.97673 1.22350 0.95961 0.97325 0.99977 1.20551 0.96830 0.87082 0.90988 0.91074 1.21734 0.95677 0.96271 0.95561 1.24767 1.10794 0.84638 1.11697 1.84777 1.45617 1.33895 1.46291 1.22748 0.87912 0.89308 0.87780 1.18761 1.20082 0.90423 1.20675 0.87368 1.27214 0.96052 1.00103 0.95771 1.69781 1.29276 1.16370 1.28872 0.84743 0.77703 0.76006 0.78424 1.17883 1.18446 1.17608 1.70764 1.28437 1.06843 1.28410 0.93528 0.90129 0.93702 0.91594 0.89546 0.88034 0.92832 0.89101 0.93654 0.78247 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.40 127.69 1.20 1.88 16 2 N -0.54 -19.17 5.17 -888.42 -4.59 -23.76 16 3 C 0.04 1.08 6.56 86.65 0.57 1.65 16 4 C -0.11 -3.15 7.06 31.80 0.22 -2.92 16 5 C -0.12 -3.93 6.55 31.47 0.21 -3.72 16 6 C 0.15 5.87 2.95 44.31 0.13 6.00 16 7 H 0.07 2.38 7.72 -2.38 -0.02 2.36 16 8 C 0.03 1.69 5.79 41.84 0.24 1.93 16 9 C -0.25 -12.76 12.12 67.29 0.82 -11.94 16 10 O -0.21 -13.02 9.06 -11.86 -0.11 -13.12 16 11 C 0.31 18.95 7.66 84.92 0.65 19.60 16 12 C -0.46 -27.08 9.45 23.16 0.22 -26.86 16 13 H 0.11 6.05 7.85 -2.91 -0.02 6.03 16 14 C 0.03 1.41 5.50 85.38 0.47 1.88 16 15 N -0.81 -44.91 11.98 21.89 0.26 -44.65 16 16 Si 1.01 38.53 29.56 68.60 2.03 40.56 16 17 H -0.25 -9.15 7.11 99.48 0.71 -8.45 16 18 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 19 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 20 N -0.61 -35.58 11.21 -297.41 -3.33 -38.91 16 21 H 0.05 1.11 8.01 -2.38 -0.02 1.10 16 22 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.40 7.96 -2.39 -0.02 1.38 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.04 1.83 7.58 -2.39 -0.02 1.82 16 30 H 0.20 8.52 8.06 -2.92 -0.02 8.49 16 31 H 0.30 14.40 8.29 -92.71 -0.77 13.63 16 Total: -1.00 -71.44 265.66 0.10 -71.34 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 1.11 Total: 21.05 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 4.73 Total: -12.50 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -7.66 Total: -107.32 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.11 Total: -13.12 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -71.44 0.10 -71.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260327740.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.076 kcal (2) G-P(sol) polarization free energy of solvation -71.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds