Wall clock time and date at job start Mon Mar 30 2020 02:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46773 * 2 1 4 4 F 1.39902 * 109.47327 * 119.99824 * 2 1 3 5 5 C 1.52997 * 109.47468 * 240.00123 * 2 1 3 6 6 C 1.50696 * 109.47571 * 175.00111 * 5 2 1 7 7 C 1.38261 * 119.99573 * 265.20928 * 6 5 2 8 8 C 1.38215 * 119.99758 * 180.23050 * 7 6 5 9 9 C 1.38259 * 119.99934 * 359.80824 * 8 7 6 10 10 C 1.38214 * 120.00094 * 359.97438 * 9 8 7 11 11 C 1.38213 * 120.00440 * 84.99420 * 6 5 2 12 12 C 1.50707 * 119.99492 * 0.02562 * 11 6 5 13 13 C 1.50695 * 109.47014 * 84.72527 * 12 11 6 14 14 H 1.08004 * 120.00546 * 0.27454 * 13 12 11 15 15 C 1.37885 * 119.99721 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00035 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99853 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47093 * 60.00328 * 17 15 13 19 19 H 1.48495 * 109.47002 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47239 * 300.00048 * 17 15 13 21 21 H 1.08998 * 109.46699 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47187 * 300.00323 * 1 2 3 23 23 H 1.08997 * 109.47000 * 60.00170 * 1 2 3 24 24 H 1.09004 * 109.47156 * 54.99135 * 5 2 1 25 25 H 1.09009 * 109.46763 * 294.99857 * 5 2 1 26 26 H 1.07997 * 120.00295 * 0.05983 * 7 6 5 27 27 H 1.07994 * 120.00445 * 179.83133 * 8 7 6 28 28 H 1.08002 * 120.00218 * 179.97438 * 9 8 7 29 29 H 1.08002 * 120.00312 * 179.97438 * 10 9 8 30 30 H 1.08992 * 109.47349 * 324.72386 * 12 11 6 31 31 H 1.08997 * 109.46649 * 204.72071 * 12 11 6 32 32 H 0.97000 * 119.99706 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0401 -0.7212 -1.2492 6 6 3.5419 -0.6149 -1.3127 7 6 4.1329 0.3935 -2.0513 8 6 5.5104 0.4882 -2.1134 9 6 6.2973 -0.4231 -1.4338 10 6 5.7065 -1.4285 -0.6918 11 6 4.3286 -1.5227 -0.6290 12 6 3.6843 -2.6192 0.1795 13 6 3.3638 -3.7848 -0.7204 14 1 3.6067 -3.7382 -1.7717 15 6 2.7659 -4.9132 -0.2004 16 7 2.4750 -4.9721 1.0808 17 14 2.3680 -6.3577 -1.3160 18 1 3.6195 -6.8665 -1.9324 19 1 1.7332 -7.4382 -0.5193 20 1 1.4343 -5.9165 -2.3832 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6054 -0.2618 -2.1370 25 1 1.7517 -1.7715 -1.2055 26 1 3.5182 1.1055 -2.5819 27 1 5.9721 1.2741 -2.6925 28 1 7.3737 -0.3494 -1.4826 29 1 6.3211 -2.1406 -0.1612 30 1 2.7654 -2.2456 0.6312 31 1 4.3691 -2.9429 0.9633 32 1 2.0540 -5.7658 1.4465 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260330869.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:13 Heat of formation + Delta-G solvation = -63.994126 kcal Electronic energy + Delta-G solvation = -15201.162819 eV Core-core repulsion = 12653.407182 eV Total energy + Delta-G solvation = -2547.755637 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.54012 -40.21675 -35.51303 -35.01004 -32.91920 -31.70513 -28.96788 -27.33596 -25.11428 -23.09956 -22.37427 -21.05698 -18.50403 -17.55755 -17.21515 -16.58473 -16.36062 -15.86832 -15.71909 -15.31385 -14.40325 -14.07964 -13.83365 -13.61767 -13.33806 -13.18725 -12.98721 -12.82088 -12.70613 -12.54622 -12.27478 -11.90299 -11.66293 -11.49060 -11.35647 -11.03657 -10.50238 -9.54005 -9.21180 -8.14399 -6.26554 0.61017 0.72838 1.37269 1.39929 1.48151 2.40411 3.03948 3.14719 3.78451 3.93188 3.95371 4.15266 4.26264 4.27906 4.39318 4.45117 4.65499 4.76818 4.86939 4.93919 5.10190 5.20248 5.25031 5.30857 5.37862 5.50902 5.61559 5.72040 5.79116 5.91335 6.20817 6.23142 6.37528 6.87428 7.39358 8.94235 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.011297 C = 0.008634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.873531 B = 2478.013562 C = 3242.254623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.086 3.914 3 H 0.099 0.901 4 F -0.229 7.229 5 C -0.106 4.106 6 C -0.107 4.107 7 C -0.115 4.115 8 C -0.141 4.141 9 C -0.123 4.123 10 C -0.154 4.154 11 C -0.060 4.060 12 C 0.033 3.967 13 C -0.519 4.519 14 H 0.047 0.953 15 C 0.005 3.995 16 N -0.928 5.928 17 Si 0.959 3.041 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.265 1.265 21 H 0.048 0.952 22 H 0.074 0.926 23 H 0.103 0.897 24 H 0.112 0.888 25 H 0.064 0.936 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.140 0.860 29 H 0.100 0.900 30 H 0.055 0.945 31 H -0.023 1.023 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 12.663 -6.697 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.050 3.950 3 H 0.117 0.883 4 F -0.210 7.210 5 C -0.144 4.144 6 C -0.107 4.107 7 C -0.132 4.132 8 C -0.158 4.158 9 C -0.140 4.140 10 C -0.173 4.173 11 C -0.060 4.060 12 C -0.004 4.004 13 C -0.557 4.557 14 H 0.065 0.935 15 C -0.193 4.193 16 N -0.568 5.568 17 Si 0.783 3.217 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.189 1.189 21 H 0.068 0.932 22 H 0.093 0.907 23 H 0.122 0.878 24 H 0.131 0.869 25 H 0.082 0.918 26 H 0.169 0.831 27 H 0.171 0.829 28 H 0.158 0.842 29 H 0.119 0.881 30 H 0.073 0.927 31 H -0.005 1.005 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.738 12.535 -6.534 14.155 hybrid contribution 0.060 -1.475 0.168 1.486 sum -0.677 11.059 -6.366 12.779 Atomic orbital electron populations 1.22353 0.92692 1.03086 1.04793 1.21835 0.95841 0.96074 0.81209 0.88294 1.92715 1.90604 1.83288 1.54393 1.21213 0.91958 1.02419 0.98785 1.19830 0.95654 0.96203 0.99057 1.21322 0.95649 0.97537 0.98741 1.21354 0.93601 1.00112 1.00757 1.21345 1.00720 0.94822 0.97153 1.21172 0.94426 0.99794 1.01864 1.20408 0.94096 0.95254 0.96196 1.18584 0.96740 0.91473 0.93557 1.21267 1.39242 1.00484 0.94708 0.93452 1.25873 0.95705 1.01294 0.96430 1.70109 1.43225 1.29825 1.13664 0.85599 0.78686 0.78555 0.78820 1.19705 1.20651 1.18939 0.93230 0.90727 0.87795 0.86922 0.91751 0.83126 0.82949 0.84187 0.88131 0.92674 1.00464 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 9.65 71.98 0.69 -3.73 16 2 C 0.09 2.79 3.95 30.59 0.12 2.91 16 3 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 4 F -0.23 -10.10 13.71 44.97 0.62 -9.48 16 5 C -0.11 -3.75 4.65 29.85 0.14 -3.61 16 6 C -0.11 -4.14 5.05 -19.87 -0.10 -4.24 16 7 C -0.11 -3.44 9.68 22.27 0.22 -3.22 16 8 C -0.14 -3.95 10.05 22.27 0.22 -3.72 16 9 C -0.12 -3.98 10.05 22.27 0.22 -3.76 16 10 C -0.15 -6.50 9.68 22.27 0.22 -6.29 16 11 C -0.06 -2.78 4.92 -19.86 -0.10 -2.88 16 12 C 0.03 1.87 4.28 29.10 0.12 1.99 16 13 C -0.52 -30.66 8.28 25.60 0.21 -30.45 16 14 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 15 C 0.00 0.29 5.46 84.66 0.46 0.75 16 16 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 17 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 21 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.11 2.97 8.05 -2.38 -0.02 2.95 16 25 H 0.06 2.85 6.40 -2.38 -0.02 2.83 16 26 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 27 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 28 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 29 H 0.10 4.34 8.06 -2.91 -0.02 4.31 16 30 H 0.06 3.24 4.10 -2.39 -0.01 3.23 16 31 H -0.02 -1.45 8.05 -2.39 -0.02 -1.47 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -70.94 271.01 6.45 -64.49 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.09 Total: 11.38 kcal Atomic # 6 Polarization: -58.68 SS G_CDS: 2.43 Total: -56.24 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.28 Total: -57.63 kcal Atomic # 9 Polarization: -10.10 SS G_CDS: 0.62 Total: -9.48 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -70.94 6.45 -64.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260330869.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.492 kcal (2) G-P(sol) polarization free energy of solvation -70.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds