Wall clock time and date at job start Mon Mar 30 2020 02:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46899 * 2 1 4 4 F 1.39896 * 109.47224 * 240.00306 * 2 1 3 5 5 C 1.50700 * 109.47481 * 119.99624 * 2 1 3 6 6 C 1.38255 * 119.99677 * 94.01964 * 5 2 1 7 7 C 1.38218 * 120.00085 * 179.97438 * 6 5 2 8 8 C 1.38259 * 119.99684 * 0.02909 * 7 6 5 9 9 C 1.38214 * 120.00034 * 359.69874 * 8 7 6 10 10 C 1.38211 * 120.00208 * 274.00304 * 5 2 1 11 11 C 1.50695 * 119.99892 * 0.02562 * 10 5 2 12 12 C 1.52999 * 109.46834 * 274.07486 * 11 10 5 13 13 C 1.50700 * 109.47050 * 174.94129 * 12 11 10 14 14 H 1.08001 * 120.00098 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00376 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00583 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99632 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47367 * 89.99605 * 17 15 13 19 19 H 1.48501 * 109.47002 * 209.99849 * 17 15 13 20 20 H 1.48503 * 109.46989 * 329.99463 * 17 15 13 21 21 H 1.09000 * 109.47257 * 294.75337 * 1 2 3 22 22 H 1.08991 * 109.47253 * 54.75534 * 1 2 3 23 23 H 1.09004 * 109.46594 * 174.75945 * 1 2 3 24 24 H 1.07997 * 120.00181 * 0.02562 * 6 5 2 25 25 H 1.08002 * 120.00066 * 180.02562 * 7 6 5 26 26 H 1.08003 * 119.99740 * 179.97438 * 8 7 6 27 27 H 1.07995 * 119.99862 * 180.30264 * 9 8 7 28 28 H 1.09009 * 109.47156 * 154.07957 * 11 10 5 29 29 H 1.08999 * 109.47424 * 34.07894 * 11 10 5 30 30 H 1.08991 * 109.47241 * 54.94308 * 12 11 10 31 31 H 1.09000 * 109.47343 * 294.93696 * 12 11 10 32 32 H 0.96997 * 120.00151 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0325 -0.7103 1.2305 6 6 2.3420 -2.0565 1.1735 7 6 2.8033 -2.7080 2.3019 8 6 2.9546 -2.0134 3.4877 9 6 2.6505 -0.6663 3.5432 10 6 2.1841 -0.0159 2.4158 11 6 1.8464 1.4514 2.4779 12 6 3.0590 2.2729 2.0354 13 6 2.6839 3.7313 1.9782 14 1 1.6811 4.0414 2.2325 15 6 3.6212 4.6700 1.6022 16 7 3.2937 5.9427 1.5518 17 14 5.3559 4.1338 1.1630 18 1 5.4303 3.8406 -0.2909 19 1 6.3099 5.2214 1.4982 20 1 5.7065 2.9132 1.9328 21 1 -0.3634 0.4303 0.9332 22 1 -0.3633 0.5930 -0.8392 23 1 -0.3633 -1.0234 -0.0939 24 1 2.2242 -2.5990 0.2471 25 1 3.0456 -3.7595 2.2572 26 1 3.3147 -2.5225 4.3695 27 1 2.7733 -0.1227 4.4683 28 1 1.5792 1.7198 3.5001 29 1 1.0056 1.6592 1.8162 30 1 3.3815 1.9417 1.0484 31 1 3.8715 2.1345 2.7486 32 1 3.9530 6.6030 1.2869 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260334942.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:09 Heat of formation + Delta-G solvation = -49.395115 kcal Electronic energy + Delta-G solvation = -14938.670096 eV Core-core repulsion = 12391.547519 eV Total energy + Delta-G solvation = -2547.122577 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.41258 -39.27454 -34.49782 -32.95233 -31.97819 -29.68576 -28.99030 -25.37716 -23.71219 -21.88483 -20.75133 -19.97486 -16.97793 -16.51308 -16.34495 -15.09374 -14.89736 -14.30601 -14.19621 -14.01736 -13.05511 -12.95961 -12.83131 -12.58413 -12.35651 -12.10860 -11.81925 -11.41321 -11.11218 -10.98915 -10.77664 -10.42405 -10.14163 -9.92839 -9.69799 -9.22652 -8.59877 -8.57150 -8.26130 -6.08405 -4.07390 1.52221 1.64620 3.29840 3.37445 3.42160 3.95778 4.42677 4.64865 4.89714 5.08563 5.20423 5.25622 5.26775 5.32212 5.35882 5.62792 5.72158 5.87432 6.00333 6.08820 6.16713 6.20267 6.34100 6.40634 6.66644 6.71614 6.76151 6.92114 7.20022 7.25130 7.35847 7.73217 8.47747 8.95603 9.54030 11.04642 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026833 B = 0.008797 C = 0.007928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.244210 B = 3182.007088 C = 3530.980255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 H 0.109 0.891 4 F -0.214 7.214 5 C -0.122 4.122 6 C -0.103 4.103 7 C -0.137 4.137 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.049 4.049 11 C -0.079 4.079 12 C -0.006 4.006 13 C -0.523 4.523 14 H 0.074 0.926 15 C 0.069 3.931 16 N -0.901 5.901 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.121 0.879 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.012 0.988 31 H 0.019 0.981 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 -15.153 0.484 15.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.087 3.913 3 H 0.127 0.873 4 F -0.195 7.195 5 C -0.123 4.123 6 C -0.121 4.121 7 C -0.156 4.156 8 C -0.134 4.134 9 C -0.140 4.140 10 C -0.049 4.049 11 C -0.116 4.116 12 C -0.044 4.044 13 C -0.561 4.561 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.540 5.540 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.189 1.189 21 H 0.098 0.902 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.139 0.861 25 H 0.135 0.865 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.837 -14.982 0.413 15.253 hybrid contribution 1.074 -0.219 -0.282 1.132 sum -1.762 -15.201 0.131 15.303 Atomic orbital electron populations 1.22331 0.93620 1.02987 1.03903 1.20537 0.94845 0.96723 0.79189 0.87292 1.92767 1.90439 1.83563 1.52764 1.20080 1.02588 0.94443 0.95173 1.20905 0.98852 0.93845 0.98477 1.20988 1.01807 0.99623 0.93136 1.21128 0.99975 0.94603 0.97718 1.21083 1.00060 0.94395 0.98444 1.20142 0.95655 0.96970 0.92163 1.20766 1.00545 0.87966 1.02336 1.19560 0.93303 0.95534 0.95965 1.21111 0.99497 0.89265 1.46253 0.90829 1.24995 0.98601 0.94785 0.94828 1.69903 1.34962 1.00760 1.48351 0.86847 0.84927 0.78658 0.79365 1.20144 1.21280 1.18934 0.90230 0.91141 0.91841 0.86085 0.86473 0.86417 0.85827 0.91337 0.91221 0.96984 0.96302 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.41 37.16 0.35 -1.94 16 2 C 0.12 2.00 3.50 -27.88 -0.10 1.90 16 3 H 0.11 1.97 5.72 -51.93 -0.30 1.67 16 4 F -0.21 -3.63 16.11 2.25 0.04 -3.60 16 5 C -0.12 -2.02 5.08 -104.63 -0.53 -2.55 16 6 C -0.10 -1.52 9.40 -39.58 -0.37 -1.90 16 7 C -0.14 -1.83 10.05 -39.58 -0.40 -2.23 16 8 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 9 C -0.12 -1.89 9.69 -39.58 -0.38 -2.27 16 10 C -0.05 -0.85 5.13 -104.63 -0.54 -1.38 16 11 C -0.08 -1.51 4.59 -27.89 -0.13 -1.64 16 12 C -0.01 -0.15 3.80 -27.88 -0.11 -0.26 16 13 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 17 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 21 H 0.08 1.04 7.04 -51.93 -0.37 0.68 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.12 1.64 7.50 -52.49 -0.39 1.25 16 25 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 26 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 27 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 28 H 0.07 1.27 8.06 -51.92 -0.42 0.86 16 29 H 0.07 1.29 5.74 -51.93 -0.30 0.99 16 30 H 0.01 0.28 6.46 -51.93 -0.34 -0.05 16 31 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 268.60 15.07 4.05 4.05 Total: -1.00 -30.23 268.60 -7.03 -37.26 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.18 Total: -0.87 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -3.03 Total: -27.24 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.73 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.04 Total: -3.60 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.23 -7.03 -37.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260334942.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.137 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds