Wall clock time and date at job start Mon Mar 30 2020 02:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46899 * 2 1 4 4 F 1.39896 * 109.47224 * 240.00306 * 2 1 3 5 5 C 1.50700 * 109.47481 * 119.99624 * 2 1 3 6 6 C 1.38255 * 119.99677 * 94.01964 * 5 2 1 7 7 C 1.38218 * 120.00085 * 179.97438 * 6 5 2 8 8 C 1.38259 * 119.99684 * 0.02909 * 7 6 5 9 9 C 1.38214 * 120.00034 * 359.69874 * 8 7 6 10 10 C 1.38211 * 120.00208 * 274.00304 * 5 2 1 11 11 C 1.50695 * 119.99892 * 0.02562 * 10 5 2 12 12 C 1.52999 * 109.46834 * 274.07486 * 11 10 5 13 13 C 1.50700 * 109.47050 * 174.94129 * 12 11 10 14 14 H 1.08001 * 120.00098 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00376 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00583 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99632 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47367 * 89.99605 * 17 15 13 19 19 H 1.48501 * 109.47002 * 209.99849 * 17 15 13 20 20 H 1.48503 * 109.46989 * 329.99463 * 17 15 13 21 21 H 1.09000 * 109.47257 * 294.75337 * 1 2 3 22 22 H 1.08991 * 109.47253 * 54.75534 * 1 2 3 23 23 H 1.09004 * 109.46594 * 174.75945 * 1 2 3 24 24 H 1.07997 * 120.00181 * 0.02562 * 6 5 2 25 25 H 1.08002 * 120.00066 * 180.02562 * 7 6 5 26 26 H 1.08003 * 119.99740 * 179.97438 * 8 7 6 27 27 H 1.07995 * 119.99862 * 180.30264 * 9 8 7 28 28 H 1.09009 * 109.47156 * 154.07957 * 11 10 5 29 29 H 1.08999 * 109.47424 * 34.07894 * 11 10 5 30 30 H 1.08991 * 109.47241 * 54.94308 * 12 11 10 31 31 H 1.09000 * 109.47343 * 294.93696 * 12 11 10 32 32 H 0.96997 * 120.00151 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0325 -0.7103 1.2305 6 6 2.3420 -2.0565 1.1735 7 6 2.8033 -2.7080 2.3019 8 6 2.9546 -2.0134 3.4877 9 6 2.6505 -0.6663 3.5432 10 6 2.1841 -0.0159 2.4158 11 6 1.8464 1.4514 2.4779 12 6 3.0590 2.2729 2.0354 13 6 2.6839 3.7313 1.9782 14 1 1.6811 4.0414 2.2325 15 6 3.6212 4.6700 1.6022 16 7 3.2937 5.9427 1.5518 17 14 5.3559 4.1338 1.1630 18 1 5.4303 3.8406 -0.2909 19 1 6.3099 5.2214 1.4982 20 1 5.7065 2.9132 1.9328 21 1 -0.3634 0.4303 0.9332 22 1 -0.3633 0.5930 -0.8392 23 1 -0.3633 -1.0234 -0.0939 24 1 2.2242 -2.5990 0.2471 25 1 3.0456 -3.7595 2.2572 26 1 3.3147 -2.5225 4.3695 27 1 2.7733 -0.1227 4.4683 28 1 1.5792 1.7198 3.5001 29 1 1.0056 1.6592 1.8162 30 1 3.3815 1.9417 1.0484 31 1 3.8715 2.1345 2.7486 32 1 3.9530 6.6030 1.2869 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260334942.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:09 Heat of formation + Delta-G solvation = -65.310838 kcal Electronic energy + Delta-G solvation = -14939.360254 eV Core-core repulsion = 12391.547519 eV Total energy + Delta-G solvation = -2547.812734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.71558 -40.46206 -36.11300 -34.53324 -33.59922 -31.13454 -30.26386 -27.08551 -24.90455 -23.42030 -22.17019 -21.34802 -19.01335 -17.80581 -17.61252 -16.45451 -16.19653 -16.12175 -15.49673 -15.19049 -14.84489 -14.60809 -14.16308 -14.05111 -13.64875 -13.30872 -13.21327 -12.95502 -12.72602 -12.40933 -12.10731 -11.95597 -11.79125 -11.60316 -11.50880 -11.16921 -10.78565 -9.73373 -9.49119 -8.31789 -6.35296 0.38401 0.49215 1.32481 1.33806 1.45385 2.32716 2.81670 3.03626 3.44565 3.71058 3.92653 4.04326 4.09426 4.12602 4.26190 4.41891 4.60303 4.68087 4.70368 4.77839 4.86464 5.00019 5.06452 5.13429 5.21403 5.40826 5.41721 5.56203 5.59404 5.66108 5.80829 6.11400 6.25448 6.72324 7.29555 8.84535 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026833 B = 0.008797 C = 0.007928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.244210 B = 3182.007088 C = 3530.980255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.120 3.880 3 H 0.082 0.918 4 F -0.219 7.219 5 C -0.135 4.135 6 C -0.111 4.111 7 C -0.128 4.128 8 C -0.112 4.112 9 C -0.132 4.132 10 C -0.072 4.072 11 C -0.069 4.069 12 C 0.000 4.000 13 C -0.529 4.529 14 H 0.040 0.960 15 C 0.011 3.989 16 N -0.947 5.947 17 Si 0.939 3.061 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.251 1.251 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.132 0.868 25 H 0.152 0.848 26 H 0.151 0.849 27 H 0.131 0.869 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.010 0.990 31 H 0.016 0.984 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.950 -17.938 0.795 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.084 3.916 3 H 0.100 0.900 4 F -0.200 7.200 5 C -0.135 4.135 6 C -0.129 4.129 7 C -0.146 4.146 8 C -0.130 4.130 9 C -0.149 4.149 10 C -0.072 4.072 11 C -0.106 4.106 12 C -0.037 4.037 13 C -0.567 4.567 14 H 0.059 0.941 15 C -0.187 4.187 16 N -0.587 5.587 17 Si 0.763 3.237 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.175 1.175 21 H 0.097 0.903 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.150 0.850 25 H 0.169 0.831 26 H 0.169 0.831 27 H 0.149 0.851 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.029 0.971 31 H 0.035 0.965 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.882 -17.782 0.729 17.897 hybrid contribution 0.707 0.612 -0.355 1.000 sum -1.174 -17.170 0.374 17.215 Atomic orbital electron populations 1.22299 0.91633 1.04174 1.04194 1.20526 0.96477 0.95333 0.79288 0.89969 1.92750 1.90678 1.83511 1.53087 1.20140 1.03300 0.95401 0.94696 1.21134 0.98869 0.93175 0.99754 1.21419 0.99718 1.01192 0.92233 1.21500 0.98712 0.93698 0.99081 1.21298 0.99888 0.95638 0.98125 1.19936 0.98147 0.95593 0.93526 1.20529 0.98610 0.89469 1.02005 1.19436 0.95075 0.93342 0.95844 1.21450 0.98121 0.91853 1.45264 0.94149 1.25885 1.03101 0.94729 0.94947 1.70040 1.36608 1.02086 1.49979 0.85819 0.79671 0.78779 0.79430 1.19434 1.20600 1.17524 0.90258 0.90492 0.90220 0.84967 0.83060 0.83139 0.85117 0.91366 0.91411 0.97126 0.96531 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.32 9.41 71.98 0.68 -3.64 16 2 C 0.12 3.84 3.50 29.85 0.10 3.95 16 3 H 0.08 3.05 5.72 -2.39 -0.01 3.03 16 4 F -0.22 -7.24 16.11 44.97 0.72 -6.52 16 5 C -0.13 -4.27 5.08 -19.87 -0.10 -4.37 16 6 C -0.11 -2.99 9.40 22.27 0.21 -2.78 16 7 C -0.13 -2.88 10.05 22.27 0.22 -2.65 16 8 C -0.11 -2.59 10.05 22.27 0.22 -2.37 16 9 C -0.13 -3.77 9.69 22.27 0.22 -3.56 16 10 C -0.07 -2.40 5.13 -19.87 -0.10 -2.50 16 11 C -0.07 -2.67 4.59 29.85 0.14 -2.53 16 12 C 0.00 0.02 3.80 29.85 0.11 0.13 16 13 C -0.53 -30.29 9.66 25.60 0.25 -30.04 16 14 H 0.04 2.51 7.99 -2.91 -0.02 2.48 16 15 C 0.01 0.63 5.47 84.66 0.46 1.09 16 16 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 17 Si 0.94 45.06 27.47 68.60 1.88 46.94 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 21 H 0.08 2.05 7.04 -2.39 -0.02 2.03 16 22 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.13 3.20 7.50 -2.91 -0.02 3.18 16 25 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 26 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 27 H 0.13 3.46 8.06 -2.91 -0.02 3.43 16 28 H 0.07 2.57 8.06 -2.38 -0.02 2.55 16 29 H 0.07 2.58 5.74 -2.39 -0.01 2.57 16 30 H 0.01 0.50 6.46 -2.39 -0.02 0.48 16 31 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 32 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -65.39 268.60 6.36 -59.03 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 1.04 Total: 8.78 kcal Atomic # 6 Polarization: -51.69 SS G_CDS: 2.41 Total: -49.27 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.30 Total: -58.95 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 0.72 Total: -6.52 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -65.39 6.36 -59.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260334942.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.284 kcal (2) G-P(sol) polarization free energy of solvation -65.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds