Wall clock time and date at job start Mon Mar 30 2020 02:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47180 * 2 1 4 4 F 1.39899 * 109.47477 * 120.00185 * 2 1 3 5 5 C 1.50699 * 109.47160 * 239.99923 * 2 1 3 6 6 C 1.38251 * 120.00274 * 266.04940 * 5 2 1 7 7 C 1.38222 * 120.00035 * 179.97438 * 6 5 2 8 8 C 1.38248 * 120.00292 * 359.97438 * 7 6 5 9 9 C 1.38212 * 119.99809 * 359.80940 * 8 7 6 10 10 C 1.38215 * 120.00122 * 86.06249 * 5 2 1 11 11 C 1.50700 * 119.99605 * 359.97438 * 10 5 2 12 12 C 1.53003 * 109.47499 * 86.37895 * 11 10 5 13 13 C 1.50700 * 109.47387 * 184.69845 * 12 11 10 14 14 H 1.07998 * 119.99401 * 359.71964 * 13 12 11 15 15 C 1.37875 * 119.99889 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00065 * 179.71840 * 15 13 12 17 17 Si 1.86804 * 119.99948 * 359.72303 * 15 13 12 18 18 H 1.48499 * 109.47007 * 90.00152 * 17 15 13 19 19 H 1.48498 * 109.46832 * 209.99927 * 17 15 13 20 20 H 1.48495 * 109.47021 * 329.99783 * 17 15 13 21 21 H 1.09003 * 109.46969 * 185.29876 * 1 2 3 22 22 H 1.08999 * 109.46820 * 305.29384 * 1 2 3 23 23 H 1.08997 * 109.47476 * 65.29503 * 1 2 3 24 24 H 1.07999 * 120.00148 * 359.97179 * 6 5 2 25 25 H 1.08006 * 119.99765 * 179.97438 * 7 6 5 26 26 H 1.07994 * 120.00371 * 179.97438 * 8 7 6 27 27 H 1.08001 * 120.00299 * 180.23298 * 9 8 7 28 28 H 1.09000 * 109.47260 * 326.37561 * 11 10 5 29 29 H 1.09006 * 109.46939 * 206.37623 * 11 10 5 30 30 H 1.09000 * 109.47359 * 64.68940 * 12 11 10 31 31 H 1.09002 * 109.46419 * 304.69303 * 12 11 10 32 32 H 0.96995 * 120.00438 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9964 -0.6595 1.1422 5 6 2.0323 -0.7104 -1.2304 6 6 2.3405 -2.0569 -1.1739 7 6 2.8008 -2.7086 -2.3026 8 6 2.9524 -2.0141 -3.4883 9 6 2.6400 -0.6690 -3.5460 10 6 2.1852 -0.0158 -2.4155 11 6 1.8490 1.4519 -2.4773 12 6 3.0656 2.2726 -2.0447 13 6 2.6951 3.7326 -1.9954 14 1 1.6934 4.0443 -2.2518 15 6 3.6365 4.6706 -1.6280 16 7 3.3147 5.9452 -1.5904 17 14 5.3689 4.1311 -1.1840 18 1 6.2138 4.1253 -2.4052 19 1 5.9416 5.0744 -0.1903 20 1 5.3283 2.7649 -0.6035 21 1 -0.3633 -1.0233 0.0949 22 1 -0.3633 0.5938 0.8388 23 1 -0.3634 0.4295 -0.9336 24 1 2.2217 -2.5997 -0.2477 25 1 3.0419 -3.7605 -2.2582 26 1 3.3124 -2.5231 -4.3701 27 1 2.7549 -0.1272 -4.4732 28 1 1.0132 1.6617 -1.8097 29 1 1.5747 1.7192 -3.4979 30 1 3.8751 2.1271 -2.7600 31 1 3.3909 1.9468 -1.0567 32 1 3.9770 6.6052 -1.3323 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260334944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:11 Heat of formation + Delta-G solvation = -49.425263 kcal Electronic energy + Delta-G solvation = -14936.340533 eV Core-core repulsion = 12389.216649 eV Total energy + Delta-G solvation = -2547.123884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.41102 -39.27394 -34.49498 -32.95528 -31.97803 -29.68697 -28.99102 -25.37610 -23.71309 -21.88534 -20.75302 -19.96989 -16.97563 -16.51930 -16.34188 -15.09408 -14.89596 -14.29415 -14.21082 -14.01751 -13.05982 -12.93936 -12.83848 -12.59908 -12.34807 -12.11523 -11.78886 -11.45480 -11.09991 -10.99605 -10.77110 -10.40820 -10.17749 -9.88491 -9.71543 -9.22545 -8.59895 -8.57279 -8.26235 -6.08356 -4.07346 1.52275 1.64587 3.29501 3.37465 3.42617 3.95794 4.42720 4.64917 4.89605 5.08510 5.20365 5.25695 5.26734 5.32231 5.35895 5.62750 5.72089 5.87278 6.00261 6.08777 6.16668 6.20100 6.34371 6.40435 6.66715 6.71618 6.75957 6.92192 7.20397 7.25069 7.35536 7.73248 8.47811 8.95620 9.54065 11.04708 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.008782 C = 0.007916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.530566 B = 3187.611984 C = 3536.361730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 H 0.109 0.891 4 F -0.214 7.214 5 C -0.122 4.122 6 C -0.103 4.103 7 C -0.138 4.138 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.049 4.049 11 C -0.079 4.079 12 C -0.007 4.007 13 C -0.523 4.523 14 H 0.074 0.926 15 C 0.069 3.931 16 N -0.901 5.901 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.264 1.264 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.121 0.879 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.014 0.986 31 H 0.017 0.983 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.988 -15.172 -0.351 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.087 3.913 3 H 0.127 0.873 4 F -0.195 7.195 5 C -0.123 4.123 6 C -0.121 4.121 7 C -0.156 4.156 8 C -0.134 4.134 9 C -0.140 4.140 10 C -0.049 4.049 11 C -0.116 4.116 12 C -0.044 4.044 13 C -0.561 4.561 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.540 5.540 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.098 0.902 24 H 0.139 0.861 25 H 0.135 0.865 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.032 0.968 31 H 0.035 0.965 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.911 -15.001 -0.277 15.284 hybrid contribution 1.089 -0.215 0.238 1.135 sum -1.823 -15.216 -0.039 15.325 Atomic orbital electron populations 1.22330 0.93617 1.02993 1.03898 1.20532 0.94827 0.96721 0.79192 0.87309 1.92767 1.90439 1.83556 1.52773 1.20080 1.02565 0.94432 0.95199 1.20905 0.98848 0.93846 0.98467 1.20986 1.01820 0.99608 0.93150 1.21123 0.99929 0.94635 0.97723 1.21085 1.00139 0.94409 0.98387 1.20145 0.95678 0.96956 0.92141 1.20767 1.00551 0.87964 1.02333 1.19561 0.93086 0.95582 0.96148 1.21110 0.99507 0.89159 1.46341 0.90831 1.24995 0.98629 0.94774 0.94819 1.69902 1.34895 1.00652 1.48534 0.86839 0.85116 0.79071 0.78738 1.20225 1.21267 1.18890 0.91836 0.91140 0.90231 0.86088 0.86474 0.86415 0.85822 0.91207 0.91355 0.96756 0.96515 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.40 37.16 0.35 -1.94 16 2 C 0.12 2.00 3.50 -27.89 -0.10 1.91 16 3 H 0.11 1.97 5.76 -51.93 -0.30 1.67 16 4 F -0.21 -3.64 16.12 2.25 0.04 -3.61 16 5 C -0.12 -2.02 5.08 -104.63 -0.53 -2.55 16 6 C -0.10 -1.52 9.40 -39.58 -0.37 -1.90 16 7 C -0.14 -1.84 10.05 -39.58 -0.40 -2.23 16 8 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 9 C -0.12 -1.89 9.69 -39.58 -0.38 -2.27 16 10 C -0.05 -0.84 5.13 -104.62 -0.54 -1.38 16 11 C -0.08 -1.51 4.60 -27.88 -0.13 -1.64 16 12 C -0.01 -0.15 3.81 -27.88 -0.11 -0.26 16 13 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 17 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.08 1.04 7.06 -51.93 -0.37 0.67 16 24 H 0.12 1.64 7.50 -52.49 -0.39 1.25 16 25 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 26 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 27 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.07 1.29 5.72 -51.93 -0.30 0.99 16 29 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 30 H 0.01 0.34 7.58 -51.93 -0.39 -0.06 16 31 H 0.02 0.40 6.11 -51.93 -0.32 0.08 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 268.68 15.07 4.05 4.05 Total: -1.00 -30.26 268.68 -7.03 -37.29 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.19 Total: -0.90 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -3.03 Total: -27.24 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.74 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.04 Total: -3.61 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.26 -7.03 -37.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260334944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.135 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds