Wall clock time and date at job start Mon Mar 30 2020 02:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47527 * 2 1 4 4 C 1.50703 * 109.47011 * 240.00289 * 2 1 3 5 5 H 1.08001 * 119.99706 * 245.62268 * 4 2 1 6 6 C 1.37878 * 120.00129 * 65.62369 * 4 2 1 7 7 N 1.31514 * 119.99998 * 197.55740 * 6 4 2 8 8 Si 1.86803 * 119.99864 * 17.55817 * 6 4 2 9 9 H 1.48500 * 109.46665 * 180.02562 * 8 6 4 10 10 H 1.48492 * 109.47087 * 60.00318 * 8 6 4 11 11 H 1.48497 * 109.47002 * 299.99622 * 8 6 4 12 12 N 1.46496 * 109.47265 * 120.00262 * 2 1 3 13 13 N 1.40071 * 126.03815 * 60.01960 * 12 2 1 14 14 C 1.30828 * 108.33982 * 180.02562 * 13 12 2 15 15 C 1.50707 * 125.85370 * 179.97438 * 14 13 12 16 16 C 1.53002 * 117.49833 * 163.65024 * 15 14 13 17 17 C 1.53001 * 60.00129 * 252.51017 * 16 15 14 18 18 C 1.39819 * 108.28606 * 0.02562 * 14 13 12 19 19 C 1.35140 * 126.03410 * 239.71428 * 12 2 1 20 20 O 1.35756 * 126.19407 * 359.97123 * 19 12 2 21 21 H 1.08991 * 109.47166 * 186.29172 * 1 2 3 22 22 H 1.09004 * 109.46723 * 306.29047 * 1 2 3 23 23 H 1.09003 * 109.46802 * 66.28455 * 1 2 3 24 24 H 0.97000 * 119.99997 * 354.84937 * 7 6 4 25 25 H 1.09001 * 115.54991 * 309.35483 * 15 14 13 26 26 H 1.09006 * 117.49629 * 359.97438 * 16 15 14 27 27 H 1.08994 * 117.50240 * 145.01646 * 16 15 14 28 28 H 1.08996 * 117.49783 * 252.51073 * 17 16 15 29 29 H 1.08998 * 117.51969 * 107.47549 * 17 16 15 30 30 H 1.07994 * 126.07855 * 179.97438 * 18 14 13 31 31 H 0.96698 * 114.00099 * 89.99764 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5763 -1.6384 -1.1340 6 6 1.7975 -0.1755 -2.4795 7 7 1.9151 -0.9297 -3.5505 8 14 1.3122 1.6202 -2.6503 9 1 1.1176 1.9459 -4.0860 10 1 2.3857 2.4787 -2.0886 11 1 0.0467 1.8633 -1.9122 12 7 2.0183 -0.6906 1.1961 13 7 1.7594 -2.0231 1.5417 14 6 2.3618 -2.2791 2.6745 15 6 2.3435 -3.5966 3.4060 16 6 3.3983 -3.8161 4.4925 17 6 3.5078 -4.5581 3.1589 18 6 3.0245 -1.1203 3.0906 19 6 2.8030 -0.1563 2.1579 20 8 3.2799 1.1143 2.1894 21 1 -0.3633 -1.0214 0.1126 22 1 -0.3633 0.6083 0.8284 23 1 -0.3633 0.4133 -0.9409 24 1 2.2390 -1.8404 -3.4692 25 1 1.3570 -4.0314 3.5667 26 1 4.1056 -3.0077 4.6778 27 1 3.1058 -4.3953 5.3682 28 1 3.2873 -5.6255 3.1573 29 1 4.2867 -4.2379 2.4669 30 1 3.6122 -1.0120 3.9901 31 1 2.6990 1.7415 2.6412 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260339086.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:20 Heat of formation + Delta-G solvation = 57.826702 kcal Electronic energy + Delta-G solvation = -15060.886748 eV Core-core repulsion = 12538.333619 eV Total energy + Delta-G solvation = -2522.553128 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.77602 -37.31267 -36.38976 -34.51831 -31.84293 -29.06162 -28.41001 -24.96637 -23.60833 -22.33803 -21.31738 -20.14637 -19.19335 -17.58784 -17.46404 -15.79232 -15.29730 -14.43065 -14.22149 -13.97174 -13.78494 -13.24734 -12.74237 -12.36022 -11.98904 -11.66974 -11.49293 -11.41136 -10.99437 -10.70012 -10.48377 -10.41489 -10.18127 -9.91540 -9.60410 -9.17289 -8.48834 -8.28415 -7.90365 -6.62202 -4.25098 2.41862 3.08804 3.14896 3.23211 3.30652 3.47441 4.06146 4.32154 4.39974 4.87743 5.05447 5.07507 5.17024 5.51733 5.68682 5.75759 5.98219 6.03304 6.11924 6.25100 6.27248 6.31783 6.37204 6.53251 6.64337 6.97116 7.22008 7.32877 7.64543 8.10325 8.26574 8.46199 8.79463 9.43458 10.77158 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.037128 B = 0.008312 C = 0.007464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.959714 B = 3367.784962 C = 3750.217303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.254 3.746 3 H 0.051 0.949 4 C -0.609 4.609 5 H 0.067 0.933 6 C 0.036 3.964 7 N -0.892 5.892 8 Si 1.039 2.961 9 H -0.278 1.278 10 H -0.279 1.279 11 H -0.272 1.272 12 N -0.324 5.324 13 N -0.253 5.253 14 C 0.078 3.922 15 C -0.069 4.069 16 C -0.169 4.169 17 C -0.168 4.168 18 C -0.294 4.294 19 C 0.247 3.753 20 O -0.467 6.467 21 H 0.062 0.938 22 H 0.026 0.974 23 H 0.073 0.927 24 H 0.272 0.728 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.141 0.859 31 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.027 0.541 14.067 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.154 3.846 3 H 0.069 0.931 4 C -0.647 4.647 5 H 0.085 0.915 6 C -0.171 4.171 7 N -0.525 5.525 8 Si 0.866 3.134 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.198 1.198 12 N -0.114 5.114 13 N -0.079 5.079 14 C -0.086 4.086 15 C -0.088 4.088 16 C -0.206 4.206 17 C -0.206 4.206 18 C -0.325 4.325 19 C 0.074 3.926 20 O -0.269 6.269 21 H 0.081 0.919 22 H 0.045 0.955 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.133 0.867 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.159 0.841 31 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.695 1.168 11.575 11.655 hybrid contribution 0.701 -0.470 1.869 2.051 sum 0.006 0.698 13.444 13.462 Atomic orbital electron populations 1.22511 0.96917 1.01874 1.00526 1.19534 0.91879 0.92055 0.81174 0.93122 1.22070 1.41730 1.10803 0.90061 0.91451 1.25736 0.94544 1.05163 0.91615 1.70827 1.40402 1.10074 1.31189 0.84146 0.77168 0.75085 0.77020 1.20316 1.20485 1.19843 1.49751 1.35301 1.07985 1.18346 1.77430 1.23010 0.93621 1.13872 1.20982 0.98961 0.94532 0.94089 1.20016 0.95485 0.92397 1.00943 1.22959 1.01964 1.03208 0.92497 1.22960 1.00725 0.97436 0.99466 1.20757 1.14538 0.93826 1.03405 1.18829 0.96256 0.86273 0.91196 1.84886 1.46114 1.15574 1.80369 0.91925 0.95499 0.90877 0.91791 0.86699 0.88451 0.88537 0.88535 0.88656 0.84140 0.75607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.13 37.16 0.34 -3.22 16 2 C 0.25 6.22 2.65 -69.08 -0.18 6.04 16 3 H 0.05 1.20 6.42 -51.93 -0.33 0.87 16 4 C -0.61 -17.55 9.03 -34.44 -0.31 -17.86 16 5 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 6 C 0.04 1.04 5.29 -17.82 -0.09 0.94 16 7 N -0.89 -27.23 13.70 55.43 0.76 -26.47 16 8 Si 1.04 24.09 26.29 -169.99 -4.47 19.62 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.27 -5.68 5.76 56.52 0.33 -5.35 16 12 N -0.32 -7.58 3.27 -56.11 -0.18 -7.76 16 13 N -0.25 -5.87 12.40 33.66 0.42 -5.46 16 14 C 0.08 1.51 6.85 -82.43 -0.56 0.95 16 15 C -0.07 -1.03 6.33 -91.77 -0.58 -1.61 16 16 C -0.17 -1.98 10.02 -26.73 -0.27 -2.25 16 17 C -0.17 -2.24 10.23 -26.73 -0.27 -2.51 16 18 C -0.29 -5.42 10.14 -39.81 -0.40 -5.83 16 19 C 0.25 5.02 7.98 -16.92 -0.13 4.89 16 20 O -0.47 -8.12 13.30 -18.98 -0.25 -8.37 16 21 H 0.06 1.45 8.13 -51.93 -0.42 1.03 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.07 1.62 4.89 -51.93 -0.25 1.37 16 24 H 0.27 8.37 8.73 -40.82 -0.36 8.02 16 25 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 26 H 0.10 1.14 7.16 -51.93 -0.37 0.77 16 27 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.14 2.16 7.39 -52.49 -0.39 1.77 16 31 H 0.39 4.41 9.06 45.56 0.41 4.82 16 LS Contribution 267.12 15.07 4.03 4.03 Total: -1.00 -32.97 267.12 -5.30 -38.27 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -3.12 Total: 6.60 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -2.47 Total: -20.46 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.99 Total: -39.68 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.25 Total: -8.37 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -4.47 Total: 19.62 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.97 -5.30 -38.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260339086.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.095 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds