Wall clock time and date at job start Mon Mar 30 2020 02:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47527 * 2 1 4 4 C 1.50703 * 109.47011 * 240.00289 * 2 1 3 5 5 H 1.08001 * 119.99706 * 245.62268 * 4 2 1 6 6 C 1.37878 * 120.00129 * 65.62369 * 4 2 1 7 7 N 1.31514 * 119.99998 * 197.55740 * 6 4 2 8 8 Si 1.86803 * 119.99864 * 17.55817 * 6 4 2 9 9 H 1.48500 * 109.46665 * 180.02562 * 8 6 4 10 10 H 1.48492 * 109.47087 * 60.00318 * 8 6 4 11 11 H 1.48497 * 109.47002 * 299.99622 * 8 6 4 12 12 N 1.46496 * 109.47265 * 120.00262 * 2 1 3 13 13 N 1.40071 * 126.03815 * 60.01960 * 12 2 1 14 14 C 1.30828 * 108.33982 * 180.02562 * 13 12 2 15 15 C 1.50707 * 125.85370 * 179.97438 * 14 13 12 16 16 C 1.53002 * 117.49833 * 163.65024 * 15 14 13 17 17 C 1.53001 * 60.00129 * 252.51017 * 16 15 14 18 18 C 1.39819 * 108.28606 * 0.02562 * 14 13 12 19 19 C 1.35140 * 126.03410 * 239.71428 * 12 2 1 20 20 O 1.35756 * 126.19407 * 359.97123 * 19 12 2 21 21 H 1.08991 * 109.47166 * 186.29172 * 1 2 3 22 22 H 1.09004 * 109.46723 * 306.29047 * 1 2 3 23 23 H 1.09003 * 109.46802 * 66.28455 * 1 2 3 24 24 H 0.97000 * 119.99997 * 354.84937 * 7 6 4 25 25 H 1.09001 * 115.54991 * 309.35483 * 15 14 13 26 26 H 1.09006 * 117.49629 * 359.97438 * 16 15 14 27 27 H 1.08994 * 117.50240 * 145.01646 * 16 15 14 28 28 H 1.08996 * 117.49783 * 252.51073 * 17 16 15 29 29 H 1.08998 * 117.51969 * 107.47549 * 17 16 15 30 30 H 1.07994 * 126.07855 * 179.97438 * 18 14 13 31 31 H 0.96698 * 114.00099 * 89.99764 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5763 -1.6384 -1.1340 6 6 1.7975 -0.1755 -2.4795 7 7 1.9151 -0.9297 -3.5505 8 14 1.3122 1.6202 -2.6503 9 1 1.1176 1.9459 -4.0860 10 1 2.3857 2.4787 -2.0886 11 1 0.0467 1.8633 -1.9122 12 7 2.0183 -0.6906 1.1961 13 7 1.7594 -2.0231 1.5417 14 6 2.3618 -2.2791 2.6745 15 6 2.3435 -3.5966 3.4060 16 6 3.3983 -3.8161 4.4925 17 6 3.5078 -4.5581 3.1589 18 6 3.0245 -1.1203 3.0906 19 6 2.8030 -0.1563 2.1579 20 8 3.2799 1.1143 2.1894 21 1 -0.3633 -1.0214 0.1126 22 1 -0.3633 0.6083 0.8284 23 1 -0.3633 0.4133 -0.9409 24 1 2.2390 -1.8404 -3.4692 25 1 1.3570 -4.0314 3.5667 26 1 4.1056 -3.0077 4.6778 27 1 3.1058 -4.3953 5.3682 28 1 3.2873 -5.6255 3.1573 29 1 4.2867 -4.2379 2.4669 30 1 3.6122 -1.0120 3.9901 31 1 2.6990 1.7415 2.6412 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260339086.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:19 Heat of formation + Delta-G solvation = 32.474484 kcal Electronic energy + Delta-G solvation = -15061.986102 eV Core-core repulsion = 12538.333619 eV Total energy + Delta-G solvation = -2523.652483 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.31260 -38.57506 -37.71772 -36.37911 -33.88176 -30.69680 -29.97287 -27.00758 -25.08176 -23.42179 -22.81278 -21.78276 -20.67882 -19.65426 -18.96476 -17.35206 -16.50887 -16.07005 -15.76367 -15.52814 -15.20693 -14.92320 -14.37488 -14.28782 -13.73916 -13.36595 -12.89306 -12.58259 -12.51930 -12.29186 -12.07099 -11.71233 -11.69245 -11.51700 -11.24320 -10.97805 -10.57376 -9.94899 -9.49557 -8.88635 -6.56503 0.88882 1.39249 1.49363 1.51750 1.69525 1.72345 2.39626 2.88545 2.97086 3.05753 3.60976 3.99625 4.04276 4.16036 4.33394 4.42108 4.53585 4.57960 4.64364 4.79964 4.87049 4.98650 5.07775 5.21767 5.31385 5.33097 5.55749 5.78469 5.79934 5.89383 6.37812 6.75738 6.91131 7.23666 8.45445 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.037128 B = 0.008312 C = 0.007464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.959714 B = 3367.784962 C = 3750.217303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.255 3.745 3 H 0.068 0.932 4 C -0.617 4.617 5 H 0.008 0.992 6 C -0.014 4.014 7 N -0.923 5.923 8 Si 1.081 2.919 9 H -0.281 1.281 10 H -0.258 1.258 11 H -0.229 1.229 12 N -0.354 5.354 13 N -0.311 5.311 14 C 0.084 3.916 15 C -0.099 4.099 16 C -0.133 4.133 17 C -0.174 4.174 18 C -0.290 4.290 19 C 0.243 3.757 20 O -0.470 6.470 21 H 0.040 0.960 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.251 0.749 25 H 0.124 0.876 26 H 0.101 0.899 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.175 0.825 31 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 2.203 16.795 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.154 3.846 3 H 0.085 0.915 4 C -0.655 4.655 5 H 0.026 0.974 6 C -0.213 4.213 7 N -0.557 5.557 8 Si 0.899 3.101 9 H -0.206 1.206 10 H -0.182 1.182 11 H -0.152 1.152 12 N -0.144 5.144 13 N -0.137 5.137 14 C -0.080 4.080 15 C -0.119 4.119 16 C -0.170 4.170 17 C -0.212 4.212 18 C -0.320 4.320 19 C 0.071 3.929 20 O -0.276 6.276 21 H 0.059 0.941 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.060 0.940 25 H 0.142 0.858 26 H 0.120 0.880 27 H 0.149 0.851 28 H 0.136 0.864 29 H 0.090 0.910 30 H 0.193 0.807 31 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -0.962 2.825 14.357 14.664 hybrid contribution 0.893 -1.096 1.119 1.804 sum -0.068 1.729 15.477 15.573 Atomic orbital electron populations 1.22356 0.95167 1.01367 1.01998 1.19338 0.93138 0.92091 0.80062 0.91474 1.22157 1.41283 1.08985 0.93057 0.97358 1.27465 0.93628 1.09259 0.90912 1.70979 1.42892 1.09393 1.32441 0.83695 0.79522 0.69257 0.77652 1.20616 1.18230 1.15238 1.49607 1.37404 1.08490 1.18933 1.77369 1.25875 0.94272 1.16225 1.21761 0.97066 0.96423 0.92775 1.20243 0.97039 0.91221 1.03392 1.23111 0.99176 1.02442 0.92300 1.23019 0.99093 0.98441 1.00656 1.21166 1.14060 0.92730 1.04039 1.19192 0.95290 0.87688 0.90698 1.84830 1.46915 1.14952 1.80950 0.94063 0.91800 0.90823 0.94042 0.85793 0.88026 0.85127 0.86389 0.90969 0.80724 0.72388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.51 9.13 71.98 0.66 -5.85 16 2 C 0.25 12.41 2.65 44.25 0.12 12.52 16 3 H 0.07 3.04 6.42 -2.39 -0.02 3.02 16 4 C -0.62 -36.96 9.03 25.60 0.23 -36.73 16 5 H 0.01 0.56 8.06 -2.91 -0.02 0.54 16 6 C -0.01 -0.79 5.29 84.65 0.45 -0.34 16 7 N -0.92 -58.73 13.70 21.45 0.29 -58.44 16 8 Si 1.08 47.26 26.29 68.60 1.80 49.07 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 11 H -0.23 -8.41 5.76 99.48 0.57 -7.84 16 12 N -0.35 -16.57 3.27 -442.75 -1.45 -18.02 16 13 N -0.31 -14.80 12.40 -47.41 -0.59 -15.38 16 14 C 0.08 3.21 6.85 43.09 0.30 3.50 16 15 C -0.10 -2.83 6.33 -11.54 -0.07 -2.91 16 16 C -0.13 -2.65 10.02 30.60 0.31 -2.35 16 17 C -0.17 -4.38 10.23 30.60 0.31 -4.06 16 18 C -0.29 -10.11 10.14 22.12 0.22 -9.89 16 19 C 0.24 9.52 7.98 83.65 0.67 10.19 16 20 O -0.47 -15.07 13.30 -90.82 -1.21 -16.28 16 21 H 0.04 1.92 8.13 -2.39 -0.02 1.90 16 22 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 23 H 0.07 3.11 4.89 -2.39 -0.01 3.10 16 24 H 0.25 16.53 8.73 -92.71 -0.81 15.72 16 25 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 26 H 0.10 1.97 7.16 -2.38 -0.02 1.95 16 27 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.18 4.72 7.39 -2.91 -0.02 4.70 16 31 H 0.42 7.96 9.06 -74.06 -0.67 7.29 16 Total: -1.00 -76.49 267.12 2.34 -74.15 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.30 Total: 20.81 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 3.19 Total: -35.92 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -1.74 Total: -91.84 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -1.21 Total: -16.28 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.80 Total: 49.07 kcal Total: -76.49 2.34 -74.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260339086.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.624 kcal (2) G-P(sol) polarization free energy of solvation -76.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds