Wall clock time and date at job start Mon Mar 30 2020 02:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35755 * 117.00126 * 2 1 4 4 C 1.39485 * 120.80269 * 0.02562 * 3 2 1 5 5 C 1.37804 * 119.25679 * 179.97438 * 4 3 2 6 6 N 1.32054 * 120.91374 * 0.02562 * 5 4 3 7 7 C 1.32489 * 121.75884 * 359.97438 * 6 5 4 8 8 N 1.39027 * 119.67347 * 179.97438 * 7 6 5 9 9 C 1.46504 * 119.99656 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47117 * 34.99952 * 9 8 7 11 11 C 1.53000 * 109.46922 * 275.00063 * 9 8 7 12 12 C 1.50702 * 109.47185 * 155.00436 * 9 8 7 13 13 H 1.08003 * 119.99631 * 359.97438 * 12 9 8 14 14 C 1.37872 * 120.00225 * 179.97438 * 12 9 8 15 15 N 1.31518 * 120.00049 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 120.00189 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.46855 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47254 * 120.00060 * 16 14 12 19 19 H 1.48499 * 109.47264 * 240.00138 * 16 14 12 20 20 C 1.38905 * 120.64881 * 359.72076 * 7 6 5 21 21 H 1.08999 * 109.47054 * 59.99693 * 1 2 3 22 22 H 1.08995 * 109.47439 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46946 * 300.00208 * 1 2 3 24 24 H 1.07999 * 120.37369 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.54168 * 180.02562 * 5 4 3 26 26 H 0.96995 * 120.00204 * 0.02562 * 8 7 6 27 27 H 1.09004 * 109.47560 * 300.00010 * 11 9 8 28 28 H 1.09000 * 109.47242 * 59.99994 * 11 9 8 29 29 H 1.08999 * 109.47397 * 180.02562 * 11 9 8 30 30 H 0.96998 * 120.00074 * 179.97438 * 15 14 12 31 31 H 1.08000 * 120.48418 * 180.28297 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.3021 2.3899 0.0005 5 6 1.9606 3.6004 0.0011 6 7 3.2800 3.6550 0.0005 7 6 4.0233 2.5582 0.0000 8 7 5.4094 2.6661 -0.0010 9 6 6.2381 1.4580 -0.0022 10 1 5.7490 0.6825 -0.5915 11 6 6.4240 0.9658 1.4345 12 6 7.5837 1.7724 -0.6035 13 1 7.7998 2.7721 -0.9505 14 6 8.5389 0.7840 -0.7107 15 7 8.2759 -0.4332 -0.2876 16 14 10.2065 1.1736 -1.4567 17 1 10.2498 2.6043 -1.8521 18 1 11.2712 0.9032 -0.4574 19 1 10.4241 0.3228 -2.6542 20 6 3.4313 1.3016 0.0058 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2226 2.3556 0.0005 25 1 1.3897 4.5172 0.0019 26 1 5.8277 3.5412 -0.0010 27 1 6.9131 1.7413 2.0239 28 1 5.4508 0.7384 1.8695 29 1 7.0409 0.0672 1.4338 30 1 8.9478 -1.1287 -0.3633 31 1 4.0398 0.4094 0.0100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260375156.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:29 Heat of formation + Delta-G solvation = -21.026651 kcal Electronic energy + Delta-G solvation = -14806.493968 eV Core-core repulsion = 12280.521502 eV Total energy + Delta-G solvation = -2525.972466 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.42992 -39.38668 -37.40717 -34.63151 -32.38210 -31.64643 -29.55701 -28.08592 -27.27999 -24.55043 -23.39555 -21.97463 -19.65264 -18.63443 -17.72282 -16.92136 -16.70632 -16.65277 -16.22872 -15.63679 -15.16715 -14.82375 -14.72576 -14.06611 -13.77155 -13.31352 -13.07410 -12.92211 -12.67818 -12.43006 -12.30642 -12.17148 -11.95257 -11.15336 -10.96082 -10.54549 -10.39057 -9.78763 -8.51288 -8.20253 -6.36450 0.47778 0.63078 1.42447 1.43963 1.55920 2.19000 2.37328 2.68765 3.04931 3.10955 3.84594 4.09192 4.24536 4.38983 4.44040 4.44515 4.66025 4.69495 4.79932 4.95006 5.01186 5.04350 5.26215 5.32600 5.55155 5.67929 5.81035 6.03589 6.26410 6.41942 6.71142 6.99670 7.30047 7.45527 8.85513 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042557 B = 0.006679 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.777468 B = 4191.260774 C = 4588.085236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.199 3.801 4 C -0.324 4.324 5 C 0.178 3.822 6 N -0.594 5.594 7 C 0.424 3.576 8 N -0.703 5.703 9 C 0.279 3.721 10 H 0.013 0.987 11 C -0.138 4.138 12 C -0.549 4.549 13 H 0.063 0.937 14 C 0.020 3.980 15 N -0.913 5.913 16 Si 0.970 3.030 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.280 1.280 20 C -0.309 4.309 21 H 0.071 0.929 22 H 0.119 0.881 23 H 0.072 0.928 24 H 0.169 0.831 25 H 0.194 0.806 26 H 0.398 0.602 27 H 0.032 0.968 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.267 0.733 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 3.230 0.821 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.146 3.854 4 C -0.348 4.348 5 C 0.019 3.981 6 N -0.317 5.317 7 C 0.188 3.812 8 N -0.330 5.330 9 C 0.175 3.825 10 H 0.031 0.969 11 C -0.198 4.198 12 C -0.587 4.587 13 H 0.081 0.919 14 C -0.181 4.181 15 N -0.552 5.552 16 Si 0.795 3.205 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.205 1.205 20 C -0.336 4.336 21 H 0.089 0.911 22 H 0.137 0.863 23 H 0.090 0.910 24 H 0.186 0.814 25 H 0.211 0.789 26 H 0.233 0.767 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.449 3.400 0.836 13.898 hybrid contribution 0.636 -0.630 -0.296 0.943 sum -12.813 2.770 0.540 13.120 Atomic orbital electron populations 1.23437 0.75537 1.05744 1.02920 1.86037 1.24387 1.26709 1.87697 1.19076 0.91041 0.85515 0.89803 1.22058 1.02275 0.91687 1.18796 1.22835 0.88164 0.98568 0.88494 1.67331 1.08715 1.30114 1.25523 1.18339 0.86119 0.88607 0.88143 1.45169 1.00951 1.10215 1.76655 1.18488 0.88669 0.82098 0.93231 0.96880 1.22000 0.98566 1.01749 0.97435 1.21516 0.98523 0.97153 1.41490 0.91894 1.25696 1.02397 0.94582 0.95408 1.70007 1.36013 1.02385 1.46756 0.85320 0.78726 0.78446 0.77988 1.19134 1.20198 1.20550 1.20626 0.93588 0.97843 1.21547 0.91054 0.86286 0.90967 0.81360 0.78906 0.76702 0.94891 0.96017 0.90968 0.92356 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.84 113.37 1.12 1.42 16 2 O -0.34 -10.43 10.51 -90.80 -0.95 -11.39 16 3 C 0.20 6.89 6.73 22.73 0.15 7.04 16 4 C -0.32 -8.76 9.10 22.47 0.20 -8.56 16 5 C 0.18 5.08 11.17 84.56 0.94 6.03 16 6 N -0.59 -22.43 10.39 -193.48 -2.01 -24.44 16 7 C 0.42 18.27 7.63 132.97 1.01 19.28 16 8 N -0.70 -32.40 5.24 -328.21 -1.72 -34.12 16 9 C 0.28 14.46 2.24 44.25 0.10 14.56 16 10 H 0.01 0.77 6.46 -2.39 -0.02 0.75 16 11 C -0.14 -6.96 9.17 71.98 0.66 -6.30 16 12 C -0.55 -29.90 8.73 25.60 0.22 -29.68 16 13 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 14 C 0.02 1.06 5.30 84.65 0.45 1.51 16 15 N -0.91 -51.53 11.32 21.45 0.24 -51.28 16 16 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 20 C -0.31 -13.18 8.78 22.59 0.20 -12.98 16 21 H 0.07 1.04 7.71 -2.39 -0.02 1.02 16 22 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.07 1.04 7.71 -2.39 -0.02 1.02 16 24 H 0.17 3.04 6.46 -2.91 -0.02 3.02 16 25 H 0.19 3.65 8.06 -2.91 -0.02 3.63 16 26 H 0.40 17.54 8.66 -92.71 -0.80 16.74 16 27 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.02 1.00 7.63 -2.39 -0.02 0.99 16 29 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 30 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.11 5.36 6.05 -2.91 -0.02 5.34 16 Total: -1.00 -64.17 264.13 2.99 -61.18 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.34 Total: 22.96 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 5.06 Total: -7.68 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -3.49 Total: -109.84 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.95 Total: -11.39 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -64.17 2.99 -61.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375156.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.157 kcal (2) G-P(sol) polarization free energy of solvation -64.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds