Wall clock time and date at job start Mon Mar 30 2020 02:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35753 * 117.00206 * 2 1 4 4 C 1.39486 * 120.80269 * 0.02562 * 3 2 1 5 5 C 1.37805 * 119.25807 * 179.97438 * 4 3 2 6 6 N 1.32052 * 120.91351 * 359.72388 * 5 4 3 7 7 C 1.32493 * 121.75836 * 0.56697 * 6 5 4 8 8 N 1.39020 * 119.67456 * 179.70925 * 7 6 5 9 9 C 1.46506 * 119.99664 * 179.72609 * 8 7 6 10 10 H 1.09000 * 109.47212 * 325.00039 * 9 8 7 11 11 C 1.53002 * 109.47035 * 85.00274 * 9 8 7 12 12 C 1.50701 * 109.46956 * 205.00088 * 9 8 7 13 13 H 1.08001 * 120.00213 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99755 * 180.02562 * 12 9 8 15 15 N 1.31508 * 119.99915 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99825 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47104 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46986 * 119.99876 * 16 14 12 19 19 H 1.48494 * 109.47457 * 240.00237 * 16 14 12 20 20 C 1.38899 * 120.64627 * 359.43044 * 7 6 5 21 21 H 1.08996 * 109.46603 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46992 * 299.99792 * 1 2 3 23 23 H 1.08994 * 109.46976 * 59.99843 * 1 2 3 24 24 H 1.08001 * 120.37004 * 359.95972 * 4 3 2 25 25 H 1.07997 * 119.53905 * 180.02562 * 5 4 3 26 26 H 0.97000 * 120.00518 * 359.72610 * 8 7 6 27 27 H 1.09004 * 109.46930 * 299.99770 * 11 9 8 28 28 H 1.09004 * 109.47059 * 59.99372 * 11 9 8 29 29 H 1.08992 * 109.47060 * 179.97438 * 11 9 8 30 30 H 0.97003 * 119.99339 * 179.97438 * 15 14 12 31 31 H 1.08003 * 120.48813 * 180.25359 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 6 1.3022 2.3899 0.0005 5 6 1.9607 3.6004 0.0011 6 7 3.2801 3.6550 0.0065 7 6 4.0234 2.5582 0.0005 8 7 5.4094 2.6661 0.0006 9 6 6.2381 1.4580 0.0000 10 1 5.7495 0.6819 0.5892 11 6 6.4230 0.9670 -1.4372 12 6 7.5842 1.7720 0.6006 13 1 7.8008 2.7715 0.9476 14 6 8.5395 0.7834 0.7062 15 7 8.2758 -0.4336 0.2832 16 14 10.2082 1.1727 1.4500 17 1 10.2521 2.6033 1.8457 18 1 10.4273 0.3216 2.6469 19 1 11.2715 0.9026 0.4492 20 6 3.4314 1.3017 0.0001 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 0.2227 2.3555 0.0003 25 1 1.3898 4.5172 0.0019 26 1 5.8278 3.5413 0.0009 27 1 5.4494 0.7399 -1.8716 28 1 6.9116 1.7431 -2.0263 29 1 7.0399 0.0685 -1.4376 30 1 8.9481 -1.1290 0.3572 31 1 4.0398 0.4093 -0.0007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260375159.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:31 Heat of formation + Delta-G solvation = -1.972468 kcal Electronic energy + Delta-G solvation = -14805.596887 eV Core-core repulsion = 12280.450672 eV Total energy + Delta-G solvation = -2525.146215 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.06484 -38.05075 -35.68182 -32.74842 -31.00183 -29.97097 -27.99404 -26.98001 -25.26230 -23.09143 -21.89214 -20.23304 -18.17592 -17.06199 -16.02044 -15.60334 -15.31934 -15.11382 -14.60483 -14.21686 -13.64889 -13.37898 -13.16348 -12.38202 -12.13584 -11.95592 -11.42792 -11.13679 -11.08574 -10.99564 -10.68258 -10.31423 -10.21800 -9.43509 -9.11384 -8.93294 -8.52968 -8.42534 -6.90373 -6.17958 -4.25973 1.87102 2.03737 3.22758 3.30721 3.34352 3.39269 4.12290 4.38984 4.48947 5.01412 5.15284 5.19247 5.22551 5.38431 5.53145 5.56681 5.81341 6.18050 6.38420 6.63742 6.67000 6.84179 6.91881 7.02976 7.38173 7.60435 7.65733 7.78561 7.94484 8.10677 8.63658 8.70519 8.98809 9.41559 10.88353 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042566 B = 0.006679 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.639860 B = 4191.196545 C = 4588.226538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.198 3.802 4 C -0.343 4.343 5 C 0.180 3.820 6 N -0.580 5.580 7 C 0.442 3.558 8 N -0.693 5.693 9 C 0.267 3.733 10 H 0.044 0.956 11 C -0.153 4.153 12 C -0.530 4.530 13 H 0.064 0.936 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.276 4.276 21 H 0.096 0.904 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.125 0.875 25 H 0.148 0.852 26 H 0.397 0.603 27 H 0.014 0.986 28 H 0.031 0.969 29 H 0.092 0.908 30 H 0.264 0.736 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.315 2.156 -1.018 12.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.226 6.226 3 C 0.146 3.854 4 C -0.368 4.368 5 C 0.020 3.980 6 N -0.302 5.302 7 C 0.203 3.797 8 N -0.318 5.318 9 C 0.165 3.835 10 H 0.062 0.938 11 C -0.212 4.212 12 C -0.569 4.569 13 H 0.082 0.918 14 C -0.137 4.137 15 N -0.524 5.524 16 Si 0.731 3.269 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.303 4.303 21 H 0.114 0.886 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.143 0.857 25 H 0.165 0.835 26 H 0.232 0.768 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.531 2.320 -1.022 11.807 hybrid contribution 0.319 -0.260 0.350 0.540 sum -11.213 2.060 -0.672 11.420 Atomic orbital electron populations 1.23005 0.78720 1.03463 1.01307 1.86051 1.21123 1.27227 1.88173 1.18955 0.91780 0.83848 0.90849 1.21625 1.00262 0.93239 1.21717 1.21994 0.89210 0.96359 0.90426 1.67289 1.06991 1.30911 1.24976 1.18267 0.86528 0.87824 0.87056 1.45505 1.00282 1.11293 1.74729 1.18874 0.89125 0.81742 0.93760 0.93788 1.22196 0.98747 1.02827 0.97451 1.21223 0.97512 0.97031 1.41113 0.91823 1.24874 0.98909 0.94791 0.95108 1.69887 1.34824 1.01594 1.46050 0.86349 0.83149 0.78563 0.78824 1.19666 1.20840 1.20824 1.20698 0.91933 0.98923 1.18712 0.88578 0.92737 0.92745 0.85735 0.83506 0.76845 0.96655 0.95015 0.88908 0.92554 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.84 101.05 0.99 1.31 16 2 O -0.31 -5.09 10.51 -18.97 -0.20 -5.29 16 3 C 0.20 3.54 6.73 -38.87 -0.26 3.28 16 4 C -0.34 -5.26 9.10 -39.28 -0.36 -5.62 16 5 C 0.18 2.87 11.17 -17.62 -0.20 2.68 16 6 N -0.58 -11.27 10.39 -12.51 -0.13 -11.40 16 7 C 0.44 9.34 7.63 -155.01 -1.18 8.16 16 8 N -0.69 -15.41 5.24 -55.09 -0.29 -15.70 16 9 C 0.27 6.62 2.25 -69.08 -0.16 6.47 16 10 H 0.04 1.18 6.45 -51.93 -0.33 0.85 16 11 C -0.15 -3.69 9.18 37.16 0.34 -3.35 16 12 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 13 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 14 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 15 N -0.89 -24.34 11.32 55.43 0.63 -23.71 16 16 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.28 -5.71 8.79 -39.09 -0.34 -6.05 16 21 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 22 H 0.05 0.51 7.71 -51.93 -0.40 0.11 16 23 H 0.05 0.51 7.71 -51.93 -0.40 0.11 16 24 H 0.12 1.49 6.46 -52.49 -0.34 1.15 16 25 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 26 H 0.40 8.47 8.66 -40.82 -0.35 8.12 16 27 H 0.01 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.14 3.13 6.06 -52.48 -0.32 2.81 16 LS Contribution 264.19 15.07 3.98 3.98 Total: -1.00 -28.84 264.19 -6.25 -35.10 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -3.67 Total: 7.21 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.56 Total: -5.82 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.21 Total: -50.82 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.20 Total: -5.29 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.84 -6.25 -35.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375159.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.126 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds