Wall clock time and date at job start Mon Mar 30 2020 02:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47102 * 2 1 4 4 C 1.50697 * 109.47295 * 239.99191 * 2 1 3 5 5 H 1.07998 * 120.00157 * 245.46070 * 4 2 1 6 6 C 1.37877 * 120.00073 * 65.46057 * 4 2 1 7 7 N 1.31522 * 119.99818 * 9.55891 * 6 4 2 8 8 Si 1.86794 * 120.00119 * 189.55796 * 6 4 2 9 9 H 1.48507 * 109.46837 * 84.99627 * 8 6 4 10 10 H 1.48501 * 109.47168 * 204.99460 * 8 6 4 11 11 H 1.48498 * 109.47173 * 324.99552 * 8 6 4 12 12 N 1.46510 * 109.47046 * 119.99277 * 2 1 3 13 13 C 1.38165 * 119.99671 * 275.00333 * 12 2 1 14 14 N 1.30947 * 125.71310 * 359.97438 * 13 12 2 15 15 C 1.35054 * 108.63605 * 180.02562 * 14 13 12 16 16 C 1.33845 * 107.71200 * 0.02562 * 15 14 13 17 17 O 1.34141 * 125.70204 * 179.97438 * 13 12 2 18 18 C 1.51264 * 110.54957 * 180.02562 * 16 15 14 19 19 C 1.54482 * 104.92664 * 343.19170 * 18 16 15 20 20 C 1.51407 * 141.83968 * 180.02562 * 15 14 13 21 21 H 1.09005 * 109.47140 * 303.67178 * 1 2 3 22 22 H 1.08998 * 109.47083 * 63.67646 * 1 2 3 23 23 H 1.09002 * 109.47328 * 183.67418 * 1 2 3 24 24 H 0.96997 * 120.00079 * 179.97438 * 7 6 4 25 25 H 0.96998 * 119.99561 * 94.99644 * 12 2 1 26 26 H 1.09007 * 110.34599 * 224.33524 * 18 16 15 27 27 H 1.08990 * 110.43894 * 102.10134 * 18 16 15 28 28 H 1.08994 * 110.96265 * 143.58292 * 19 18 16 29 29 H 1.09004 * 110.96473 * 267.28621 * 19 18 16 30 30 H 1.09002 * 110.33433 * 77.92108 * 20 15 14 31 31 H 1.09001 * 110.38102 * 315.64330 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.5786 -1.6372 -1.1336 6 6 1.7946 -0.1777 -2.4795 7 7 1.2993 1.0353 -2.5936 8 14 2.1761 -1.1786 -4.0099 9 1 1.0240 -2.0616 -4.3237 10 1 2.4228 -0.2621 -5.1520 11 1 3.3845 -2.0077 -3.7706 12 7 2.0183 -0.6905 1.1963 13 6 2.1502 -0.0011 2.3864 14 7 1.8730 1.2654 2.5709 15 6 2.1273 1.5796 3.8595 16 6 2.5704 0.4732 4.4686 17 8 2.5837 -0.5171 3.5462 18 6 2.8759 0.7540 5.9232 19 6 2.9646 2.2932 6.0212 20 6 2.0827 2.7379 4.8335 21 1 -0.3634 0.5698 0.8553 22 1 -0.3633 0.4557 -0.9211 23 1 -0.3634 -1.0256 0.0659 24 1 1.1324 1.4104 -3.4725 25 1 2.2490 -1.6317 1.1528 26 1 3.8264 0.3009 6.2052 27 1 2.0744 0.3793 6.5596 28 1 2.5539 2.6481 6.9664 29 1 3.9921 2.6336 5.8926 30 1 1.0597 2.9139 5.1662 31 1 2.4923 3.6370 4.3731 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260424958.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:42 Heat of formation + Delta-G solvation = 38.244166 kcal Electronic energy + Delta-G solvation = -14853.864872 eV Core-core repulsion = 12330.462581 eV Total energy + Delta-G solvation = -2523.402291 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.54356 -37.06198 -35.86038 -33.31362 -32.37858 -29.20644 -27.80957 -26.54165 -25.20118 -22.20118 -20.71775 -20.38192 -19.94214 -17.26172 -16.45612 -15.93869 -15.30884 -14.90639 -14.87135 -13.90620 -13.36171 -12.85554 -12.53018 -12.34303 -12.09848 -11.53349 -11.38482 -11.19597 -11.16898 -11.02497 -10.77890 -10.50327 -10.29497 -10.14628 -9.42437 -9.18498 -8.93920 -8.46456 -6.82658 -6.17489 -4.23342 2.27106 2.63318 3.24971 3.31492 3.33648 3.56567 3.90645 4.32901 4.69301 4.91594 4.96047 5.16414 5.26640 5.65339 5.70173 5.75030 5.77464 5.96439 6.13917 6.30163 6.63167 6.71728 6.76304 6.99207 7.04118 7.42564 7.60841 7.69387 7.92659 8.04969 8.42192 8.72562 8.99368 9.41775 10.90824 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.062651 B = 0.006030 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.814911 B = 4642.452220 C = 4814.497778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.286 3.714 3 H 0.060 0.940 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.070 3.930 7 N -0.880 5.880 8 Si 0.902 3.098 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.666 5.666 13 C 0.478 3.522 14 N -0.533 5.533 15 C 0.008 3.992 16 C -0.158 4.158 17 O -0.226 6.226 18 C -0.005 4.005 19 C -0.114 4.114 20 C -0.038 4.038 21 H 0.022 0.978 22 H 0.075 0.925 23 H 0.029 0.971 24 H 0.266 0.734 25 H 0.403 0.597 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.776 0.449 13.735 13.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.186 3.814 3 H 0.078 0.922 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.134 4.134 7 N -0.516 5.516 8 Si 0.729 3.271 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.312 5.312 13 C 0.179 3.821 14 N -0.272 5.272 15 C -0.112 4.112 16 C -0.212 4.212 17 O -0.116 6.116 18 C -0.043 4.043 19 C -0.152 4.152 20 C -0.076 4.076 21 H 0.041 0.959 22 H 0.094 0.906 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.238 0.762 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.442 1.094 13.008 13.133 hybrid contribution 0.464 -1.549 -0.574 1.716 sum 1.906 -0.455 12.434 12.587 Atomic orbital electron populations 1.22087 0.98773 0.98786 1.00702 1.18868 0.90458 0.94365 0.77667 0.92188 1.21131 1.37576 1.08885 0.90099 0.91885 1.24862 0.94889 0.94666 0.98962 1.69987 1.43593 1.13661 1.24385 0.86460 0.78773 0.79875 0.81998 1.20346 1.21088 1.19865 1.44604 1.70870 1.12297 1.03387 1.22083 0.91902 0.85984 0.82102 1.70382 1.30699 1.10099 1.16067 1.22065 1.01375 0.97303 0.90495 1.22839 1.16038 0.87388 0.94949 1.84109 1.70161 1.38974 1.18334 1.20345 1.01980 0.96072 0.85878 1.22430 1.00783 0.93664 0.98340 1.20422 1.00687 0.94780 0.91665 0.95881 0.90584 0.95191 0.92427 0.76192 0.90889 0.90303 0.89544 0.90359 0.89959 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.37 37.16 0.35 -3.21 16 2 C 0.29 7.37 2.57 -69.08 -0.18 7.19 16 3 H 0.06 1.76 7.73 -51.93 -0.40 1.36 16 4 C -0.54 -14.40 8.66 -34.44 -0.30 -14.70 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.90 5.17 -17.82 -0.09 1.80 16 7 N -0.88 -24.88 12.16 55.43 0.67 -24.21 16 8 Si 0.90 20.67 29.55 -169.99 -5.02 15.64 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.67 -15.07 5.20 -56.95 -0.30 -15.37 16 13 C 0.48 10.81 9.02 -87.08 -0.79 10.03 16 14 N -0.53 -12.40 10.72 -10.46 -0.11 -12.51 16 15 C 0.01 0.15 7.98 -82.37 -0.66 -0.51 16 16 C -0.16 -2.83 8.24 -35.57 -0.29 -3.12 16 17 O -0.23 -4.68 10.81 3.19 0.03 -4.64 16 18 C -0.01 -0.06 6.79 -26.83 -0.18 -0.24 16 19 C -0.11 -1.11 7.14 -25.18 -0.18 -1.29 16 20 C -0.04 -0.50 6.80 -26.76 -0.18 -0.68 16 21 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.08 2.00 6.83 -51.93 -0.35 1.64 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.40 8.13 8.65 -40.82 -0.35 7.78 16 26 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 265.89 15.07 4.01 4.01 Total: -1.00 -30.90 265.89 -7.25 -38.15 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.03 Total: 3.66 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.50 Total: -4.73 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.27 Total: -52.09 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: 0.03 Total: -4.64 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.90 -7.25 -38.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260424958.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.395 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds