Wall clock time and date at job start Mon Mar 30 2020 02:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47102 * 2 1 4 4 C 1.50697 * 109.47295 * 239.99191 * 2 1 3 5 5 H 1.07998 * 120.00157 * 245.46070 * 4 2 1 6 6 C 1.37877 * 120.00073 * 65.46057 * 4 2 1 7 7 N 1.31522 * 119.99818 * 9.55891 * 6 4 2 8 8 Si 1.86794 * 120.00119 * 189.55796 * 6 4 2 9 9 H 1.48507 * 109.46837 * 84.99627 * 8 6 4 10 10 H 1.48501 * 109.47168 * 204.99460 * 8 6 4 11 11 H 1.48498 * 109.47173 * 324.99552 * 8 6 4 12 12 N 1.46510 * 109.47046 * 119.99277 * 2 1 3 13 13 C 1.38165 * 119.99671 * 275.00333 * 12 2 1 14 14 N 1.30947 * 125.71310 * 359.97438 * 13 12 2 15 15 C 1.35054 * 108.63605 * 180.02562 * 14 13 12 16 16 C 1.33845 * 107.71200 * 0.02562 * 15 14 13 17 17 O 1.34141 * 125.70204 * 179.97438 * 13 12 2 18 18 C 1.51264 * 110.54957 * 180.02562 * 16 15 14 19 19 C 1.54482 * 104.92664 * 343.19170 * 18 16 15 20 20 C 1.51407 * 141.83968 * 180.02562 * 15 14 13 21 21 H 1.09005 * 109.47140 * 303.67178 * 1 2 3 22 22 H 1.08998 * 109.47083 * 63.67646 * 1 2 3 23 23 H 1.09002 * 109.47328 * 183.67418 * 1 2 3 24 24 H 0.96997 * 120.00079 * 179.97438 * 7 6 4 25 25 H 0.96998 * 119.99561 * 94.99644 * 12 2 1 26 26 H 1.09007 * 110.34599 * 224.33524 * 18 16 15 27 27 H 1.08990 * 110.43894 * 102.10134 * 18 16 15 28 28 H 1.08994 * 110.96265 * 143.58292 * 19 18 16 29 29 H 1.09004 * 110.96473 * 267.28621 * 19 18 16 30 30 H 1.09002 * 110.33433 * 77.92108 * 20 15 14 31 31 H 1.09001 * 110.38102 * 315.64330 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.5786 -1.6372 -1.1336 6 6 1.7946 -0.1777 -2.4795 7 7 1.2993 1.0353 -2.5936 8 14 2.1761 -1.1786 -4.0099 9 1 1.0240 -2.0616 -4.3237 10 1 2.4228 -0.2621 -5.1520 11 1 3.3845 -2.0077 -3.7706 12 7 2.0183 -0.6905 1.1963 13 6 2.1502 -0.0011 2.3864 14 7 1.8730 1.2654 2.5709 15 6 2.1273 1.5796 3.8595 16 6 2.5704 0.4732 4.4686 17 8 2.5837 -0.5171 3.5462 18 6 2.8759 0.7540 5.9232 19 6 2.9646 2.2932 6.0212 20 6 2.0827 2.7379 4.8335 21 1 -0.3634 0.5698 0.8553 22 1 -0.3633 0.4557 -0.9211 23 1 -0.3634 -1.0256 0.0659 24 1 1.1324 1.4104 -3.4725 25 1 2.2490 -1.6317 1.1528 26 1 3.8264 0.3009 6.2052 27 1 2.0744 0.3793 6.5596 28 1 2.5539 2.6481 6.9664 29 1 3.9921 2.6336 5.8926 30 1 1.0597 2.9139 5.1662 31 1 2.4923 3.6370 4.3731 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260424958.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:42 Heat of formation + Delta-G solvation = 16.103053 kcal Electronic energy + Delta-G solvation = -14854.824982 eV Core-core repulsion = 12330.462581 eV Total energy + Delta-G solvation = -2524.362401 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.08590 -38.36393 -37.58921 -35.04192 -34.20224 -31.11032 -28.88446 -27.94197 -27.24341 -23.88855 -22.02502 -21.90338 -21.62069 -19.02795 -18.00118 -17.69164 -17.02552 -16.58469 -15.91172 -15.61456 -14.81676 -14.51420 -14.14504 -13.78722 -13.36932 -13.27493 -13.00246 -12.78892 -12.68264 -12.44492 -12.20971 -12.10631 -12.07385 -11.80892 -11.22659 -10.98046 -10.66362 -10.44889 -8.44483 -8.22780 -6.37682 0.77273 1.07830 1.44887 1.46063 1.56034 1.95500 2.37560 2.51899 3.08529 3.47311 3.94500 4.13681 4.23246 4.29780 4.67340 4.69474 4.78851 4.83082 4.88432 4.97397 4.99930 5.17386 5.23737 5.34474 5.37197 5.44832 5.57871 5.68676 5.93822 6.22013 6.59873 6.70506 7.25723 7.37696 8.85458 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.062651 B = 0.006030 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.814911 B = 4642.452220 C = 4814.497778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.299 3.701 3 H 0.014 0.986 4 C -0.554 4.554 5 H 0.071 0.929 6 C 0.021 3.979 7 N -0.915 5.915 8 Si 0.973 3.027 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.266 1.266 12 N -0.669 5.669 13 C 0.454 3.546 14 N -0.571 5.571 15 C -0.035 4.035 16 C -0.153 4.153 17 O -0.232 6.232 18 C -0.005 4.005 19 C -0.098 4.098 20 C -0.039 4.039 21 H 0.019 0.981 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.268 0.732 25 H 0.412 0.588 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.373 -0.105 15.543 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.197 3.803 3 H 0.032 0.968 4 C -0.592 4.592 5 H 0.089 0.911 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.798 3.202 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.190 1.190 12 N -0.317 5.317 13 C 0.155 3.845 14 N -0.313 5.313 15 C -0.154 4.154 16 C -0.207 4.207 17 O -0.121 6.121 18 C -0.042 4.042 19 C -0.135 4.135 20 C -0.077 4.077 21 H 0.038 0.962 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.249 0.751 26 H 0.112 0.888 27 H 0.123 0.877 28 H 0.147 0.853 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.051 0.531 14.868 15.018 hybrid contribution 0.297 -1.302 -0.998 1.667 sum 2.348 -0.771 13.870 14.089 Atomic orbital electron populations 1.21894 0.98247 0.99296 0.99395 1.18439 0.90750 0.92197 0.78884 0.96839 1.21447 1.37827 1.09219 0.90715 0.91072 1.25761 0.94557 0.95524 1.02144 1.70122 1.44601 1.15302 1.25216 0.85344 0.78946 0.78258 0.77702 1.19381 1.20966 1.19038 1.44164 1.71885 1.12558 1.03045 1.22061 0.93537 0.86190 0.82699 1.70297 1.31139 1.10783 1.19040 1.23079 1.02313 1.00460 0.89548 1.24357 1.13233 0.86115 0.96951 1.84104 1.69811 1.39936 1.18279 1.20795 1.03917 0.97803 0.81678 1.22528 1.00890 0.91680 0.98429 1.20724 1.02566 0.92894 0.91520 0.96234 0.92559 0.93711 0.92288 0.75076 0.88804 0.87747 0.85267 0.89422 0.88562 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.58 9.37 71.98 0.67 -5.90 16 2 C 0.30 15.97 2.57 44.24 0.11 16.08 16 3 H 0.01 0.85 7.73 -2.39 -0.02 0.83 16 4 C -0.55 -30.10 8.66 25.60 0.22 -29.88 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.02 1.15 5.17 84.65 0.44 1.58 16 7 N -0.92 -53.05 12.16 21.45 0.26 -52.79 16 8 Si 0.97 42.40 29.55 68.60 2.03 44.43 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 12 N -0.67 -31.30 5.20 -444.59 -2.31 -33.62 16 13 C 0.45 21.16 9.02 179.11 1.62 22.78 16 14 N -0.57 -27.55 10.72 -301.38 -3.23 -30.78 16 15 C -0.04 -1.34 7.98 41.29 0.33 -1.01 16 16 C -0.15 -5.29 8.24 24.87 0.20 -5.08 16 17 O -0.23 -9.63 10.81 -11.51 -0.12 -9.75 16 18 C 0.00 -0.09 6.79 30.53 0.21 0.12 16 19 C -0.10 -1.47 7.14 31.60 0.23 -1.25 16 20 C -0.04 -0.96 6.80 30.57 0.21 -0.75 16 21 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 22 H 0.06 3.06 6.83 -2.39 -0.02 3.04 16 23 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.41 17.06 8.65 -92.71 -0.80 16.26 16 26 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -69.81 265.89 1.19 -68.62 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.34 Total: 17.21 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 4.24 Total: -3.32 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -5.28 Total: -117.18 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.12 Total: -9.75 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -69.81 1.19 -68.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260424958.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.719 kcal (2) G-P(sol) polarization free energy of solvation -69.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds