Wall clock time and date at job start Mon Mar 30 2020 02:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47684 * 2 1 4 4 C 1.50703 * 109.47382 * 120.00306 * 2 1 3 5 5 H 1.07999 * 120.00422 * 119.99504 * 4 2 1 6 6 C 1.37879 * 119.99599 * 299.99708 * 4 2 1 7 7 N 1.31522 * 120.00102 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00213 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47006 * 89.99996 * 8 6 4 10 10 H 1.48495 * 109.47110 * 210.00128 * 8 6 4 11 11 H 1.48499 * 109.46690 * 330.00336 * 8 6 4 12 12 N 1.46501 * 109.46859 * 239.99707 * 2 1 3 13 13 C 1.38164 * 119.99921 * 85.00514 * 12 2 1 14 14 N 1.30954 * 125.70709 * 179.97438 * 13 12 2 15 15 C 1.35065 * 108.63496 * 180.02562 * 14 13 12 16 16 C 1.33846 * 107.70583 * 359.97438 * 15 14 13 17 17 O 1.34131 * 125.70785 * 0.03678 * 13 12 2 18 18 C 1.51263 * 110.54376 * 179.97438 * 16 15 14 19 19 C 1.54487 * 104.92692 * 16.80837 * 18 16 15 20 20 C 1.51339 * 141.85098 * 179.97438 * 15 14 13 21 21 H 1.09000 * 109.46420 * 300.00138 * 1 2 3 22 22 H 1.09002 * 109.46991 * 59.99817 * 1 2 3 23 23 H 1.08993 * 109.47264 * 180.02562 * 1 2 3 24 24 H 0.97001 * 120.00238 * 180.02562 * 7 6 4 25 25 H 0.97000 * 120.00356 * 265.00182 * 12 2 1 26 26 H 1.09007 * 110.34771 * 135.66476 * 18 16 15 27 27 H 1.08998 * 110.35324 * 257.94034 * 18 16 15 28 28 H 1.08997 * 110.96354 * 92.68177 * 19 18 16 29 29 H 1.09002 * 110.95742 * 216.39025 * 19 18 16 30 30 H 1.09004 * 110.34381 * 44.34699 * 20 15 14 31 31 H 1.09000 * 110.43727 * 282.12383 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9437 0.8303 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.6298 -0.5459 4.4124 10 1 1.3432 -0.9492 5.1120 11 1 2.4859 -2.5662 3.7119 12 7 2.0183 -0.6907 -1.1962 13 6 2.1503 -0.0015 -2.3863 14 7 2.5743 -0.5052 -3.5183 15 6 2.5673 0.4690 -4.4537 16 6 2.1268 1.5903 -3.8705 17 8 1.8667 1.2958 -2.5753 18 6 2.0938 2.7288 -4.8659 19 6 2.1705 2.0487 -6.2509 20 6 2.8827 0.7207 -5.9124 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 0.7096 1.1619 3.4844 25 1 2.2489 -1.6319 -1.1526 26 1 1.1639 3.2894 -4.7699 27 1 2.9506 3.3862 -4.7184 28 1 1.1733 1.8649 -6.6508 29 1 2.7633 2.6442 -6.9453 30 1 2.4908 -0.0877 -6.5297 31 1 3.9584 0.8203 -6.0575 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260424963.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:44 Heat of formation + Delta-G solvation = 15.976095 kcal Electronic energy + Delta-G solvation = -14877.530232 eV Core-core repulsion = 12353.162325 eV Total energy + Delta-G solvation = -2524.367907 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.11463 -38.44877 -37.45635 -35.26413 -34.26516 -30.97251 -28.91920 -27.90647 -27.33282 -23.53418 -23.05914 -21.73939 -21.02161 -19.10609 -17.95653 -17.86342 -17.07402 -16.71569 -15.89947 -15.60981 -14.85238 -14.61362 -14.13822 -13.78805 -13.40883 -13.22716 -12.92992 -12.82161 -12.75632 -12.38042 -12.22013 -12.14569 -12.08391 -11.88803 -11.22027 -11.16866 -10.74062 -10.46933 -8.45752 -8.24452 -6.42277 0.76695 1.23278 1.44188 1.44575 1.55717 1.87779 2.22569 2.44122 3.06044 3.47455 3.90905 4.14708 4.21883 4.28286 4.55928 4.67550 4.79790 4.82649 4.87205 4.90982 4.97565 5.15607 5.23556 5.31188 5.36303 5.45247 5.57115 5.67392 5.91353 6.07595 6.60381 6.70170 7.16116 7.32010 8.81715 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.065164 B = 0.006020 C = 0.005793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.580949 B = 4650.244673 C = 4832.584642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.281 3.719 3 H 0.004 0.996 4 C -0.551 4.551 5 H 0.071 0.929 6 C 0.021 3.979 7 N -0.914 5.914 8 Si 0.975 3.025 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.264 1.264 12 N -0.666 5.666 13 C 0.458 3.542 14 N -0.571 5.571 15 C -0.026 4.026 16 C -0.163 4.163 17 O -0.236 6.236 18 C -0.012 4.012 19 C -0.097 4.097 20 C -0.034 4.034 21 H 0.076 0.924 22 H 0.013 0.987 23 H 0.040 0.960 24 H 0.269 0.731 25 H 0.425 0.575 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 2.792 -14.232 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.178 3.822 3 H 0.021 0.979 4 C -0.589 4.589 5 H 0.089 0.911 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.800 3.200 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.188 1.188 12 N -0.315 5.315 13 C 0.160 3.840 14 N -0.313 5.313 15 C -0.144 4.144 16 C -0.216 4.216 17 O -0.124 6.124 18 C -0.049 4.049 19 C -0.134 4.134 20 C -0.072 4.072 21 H 0.095 0.905 22 H 0.032 0.968 23 H 0.060 0.940 24 H 0.078 0.922 25 H 0.265 0.735 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.147 0.853 30 H 0.107 0.893 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.967 2.498 -14.035 14.391 hybrid contribution -0.043 -0.126 1.642 1.648 sum 1.925 2.372 -12.393 12.764 Atomic orbital electron populations 1.22019 0.97883 0.99913 0.99903 1.18550 0.91343 0.91613 0.80679 0.97853 1.21422 1.33054 1.13890 0.90496 0.91128 1.25744 0.94614 0.95567 1.02085 1.70008 1.36550 1.23642 1.24988 0.85290 0.77917 0.79018 0.77810 1.20192 1.20469 1.18779 1.44110 1.71693 1.12279 1.03436 1.22066 0.93771 0.78532 0.89610 1.70235 1.30353 1.32425 0.98282 1.23038 1.02550 0.89082 0.99766 1.24423 1.12353 1.03709 0.81145 1.84184 1.70282 1.27661 1.30308 1.20834 1.04386 0.91487 0.88210 1.22527 1.02686 0.93909 0.94322 1.20694 1.02468 0.99432 0.84564 0.90527 0.96801 0.94049 0.92180 0.73500 0.89426 0.88205 0.89240 0.85264 0.89293 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.98 9.27 71.98 0.67 -6.31 16 2 C 0.28 14.78 2.74 44.25 0.12 14.90 16 3 H 0.00 0.21 7.85 -2.39 -0.02 0.20 16 4 C -0.55 -29.61 8.73 25.60 0.22 -29.39 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -51.23 11.32 21.45 0.24 -50.99 16 8 Si 0.98 41.98 29.54 68.60 2.03 44.01 16 9 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 12 N -0.67 -31.36 5.20 -444.61 -2.31 -33.68 16 13 C 0.46 21.51 8.94 179.11 1.60 23.11 16 14 N -0.57 -25.05 11.35 -301.44 -3.42 -28.47 16 15 C -0.03 -0.92 7.97 41.27 0.33 -0.59 16 16 C -0.16 -5.99 8.24 24.87 0.20 -5.78 16 17 O -0.24 -11.02 10.32 -11.42 -0.12 -11.14 16 18 C -0.01 -0.26 6.79 30.53 0.21 -0.05 16 19 C -0.10 -1.44 7.14 31.59 0.23 -1.21 16 20 C -0.03 -0.74 6.79 30.54 0.21 -0.53 16 21 H 0.08 4.15 6.07 -2.39 -0.01 4.14 16 22 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 25 H 0.42 18.41 8.66 -92.71 -0.80 17.61 16 26 H 0.09 1.75 8.14 -2.38 -0.02 1.74 16 27 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -67.08 264.75 0.99 -66.09 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.34 Total: 18.49 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 4.24 Total: -4.32 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -5.49 Total: -113.13 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.12 Total: -11.14 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -67.08 0.99 -66.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260424963.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.065 kcal (2) G-P(sol) polarization free energy of solvation -67.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds