Wall clock time and date at job start Mon Mar 30 2020 02:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 N 1.35307 * 126.20178 * 59.69258 * 12 2 1 14 14 H 0.96997 * 125.99314 * 0.02562 * 13 12 2 15 15 N 1.40428 * 108.00814 * 179.86362 * 13 12 2 16 16 C 1.29739 * 108.08511 * 0.35677 * 15 13 12 17 17 C 1.34248 * 126.20159 * 240.00049 * 12 2 1 18 18 C 1.50893 * 129.41469 * 0.15153 * 17 12 2 19 19 O 1.43463 * 107.71697 * 164.71764 * 18 17 12 20 20 C 1.42909 * 114.63718 * 51.46612 * 19 18 17 21 21 C 1.51039 * 129.50033 * 179.97438 * 16 15 13 22 22 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 23 23 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.80998 * 284.27206 * 18 17 12 27 27 H 1.08994 * 109.80936 * 45.10111 * 18 17 12 28 28 H 1.09002 * 109.39260 * 47.72102 * 20 19 18 29 29 H 1.09002 * 109.39284 * 167.53406 * 20 19 18 30 30 H 1.09001 * 109.84435 * 44.54942 * 21 16 15 31 31 H 1.09000 * 109.84396 * 283.55816 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 6 2.0323 -0.7104 1.2306 13 7 1.7791 -1.9952 1.5709 14 1 1.2411 -2.6237 1.0644 15 7 2.4349 -2.2603 2.7840 16 6 3.0466 -1.1783 3.1560 17 6 2.8072 -0.1813 2.1907 18 6 3.3688 1.2143 2.3081 19 8 3.8189 1.3916 3.6587 20 6 4.6893 0.3637 4.1364 21 6 3.8922 -0.9258 4.3817 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7173 1.1669 -3.4844 26 1 4.2062 1.3345 1.6208 27 1 2.5937 1.9449 2.0771 28 1 5.4655 0.1733 3.3952 29 1 5.1512 0.6855 5.0698 30 1 4.5764 -1.7599 4.5375 31 1 3.2512 -0.8036 5.2548 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260469765.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:39 Heat of formation + Delta-G solvation = -7.250088 kcal Electronic energy + Delta-G solvation = -15286.312417 eV Core-core repulsion = 12760.937348 eV Total energy + Delta-G solvation = -2525.375069 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.43887 -38.97372 -36.50879 -33.95436 -32.75290 -31.75316 -29.89871 -27.31366 -26.51925 -24.34408 -23.73943 -20.81649 -20.00889 -18.68966 -17.91305 -16.87155 -16.59361 -16.49842 -16.09068 -15.42298 -14.81160 -14.67840 -14.34508 -14.00001 -13.42334 -13.25323 -12.99197 -12.84451 -12.74920 -12.33879 -12.27822 -11.84812 -11.66832 -11.55000 -11.17673 -10.61903 -10.55528 -10.13688 -9.22005 -8.18054 -6.33802 1.07340 1.39228 1.42135 1.50772 1.79530 2.00374 2.39160 2.96689 3.10993 3.61084 3.87860 4.14423 4.37330 4.49421 4.52253 4.58067 4.67125 4.76618 4.81655 4.95314 5.01008 5.04531 5.13594 5.23449 5.49914 5.72853 5.76721 5.91848 6.16887 6.27610 6.49913 6.71051 6.83609 7.35680 8.86313 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.037975 B = 0.008085 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.141285 B = 3462.319012 C = 3586.666269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.096 3.904 3 H 0.035 0.965 4 C -0.533 4.533 5 H 0.047 0.953 6 C 0.026 3.974 7 N -0.907 5.907 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.152 3.848 13 N -0.482 5.482 14 H 0.440 0.560 15 N -0.323 5.323 16 C 0.074 3.926 17 C -0.330 4.330 18 C 0.155 3.845 19 O -0.393 6.393 20 C 0.062 3.938 21 C -0.065 4.065 22 H 0.071 0.929 23 H 0.031 0.969 24 H 0.027 0.973 25 H 0.266 0.734 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.136 0.864 30 H 0.108 0.892 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.978 -1.118 9.518 10.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.076 3.924 3 H 0.053 0.947 4 C -0.571 4.571 5 H 0.065 0.935 6 C -0.174 4.174 7 N -0.545 5.545 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.023 3.977 13 N -0.190 5.190 14 H 0.285 0.715 15 N -0.144 5.144 16 C -0.095 4.095 17 C -0.341 4.341 18 C 0.078 3.922 19 O -0.312 6.312 20 C -0.015 4.015 21 C -0.104 4.104 22 H 0.090 0.910 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.154 0.846 30 H 0.127 0.873 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.591 -2.059 9.793 11.010 hybrid contribution -0.100 -0.262 -1.861 1.882 sum 4.492 -2.321 7.931 9.406 Atomic orbital electron populations 1.21651 0.96672 0.99497 1.00564 1.17524 0.93438 0.94604 0.86814 0.94684 1.21150 1.32250 1.12755 0.90952 0.93481 1.25590 0.94895 0.95481 1.01477 1.69958 1.36683 1.23326 1.24522 0.85611 0.78666 0.78452 0.79244 1.19971 1.20526 1.20015 1.21220 0.94682 0.85607 0.96150 1.46310 1.43250 1.10562 1.18865 0.71534 1.76639 1.15473 1.23435 0.98838 1.22708 0.98177 0.90353 0.98297 1.20650 1.13088 1.00757 0.99615 1.20763 0.97474 0.90926 0.83058 1.87898 1.66848 1.47359 1.29055 1.22830 0.90932 0.86423 1.01288 1.20957 0.97529 1.00119 0.91810 0.91014 0.95033 0.95419 0.92435 0.92455 0.88824 0.92725 0.84640 0.87342 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.95 71.98 0.64 -5.15 16 2 C 0.10 4.65 2.70 -12.28 -0.03 4.62 16 3 H 0.04 1.81 7.59 -2.39 -0.02 1.79 16 4 C -0.53 -27.84 8.54 25.60 0.22 -27.62 16 5 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 6 C 0.03 1.36 5.31 84.65 0.45 1.81 16 7 N -0.91 -48.98 11.33 21.45 0.24 -48.74 16 8 Si 0.95 41.76 29.54 68.60 2.03 43.78 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 C 0.15 6.66 5.63 41.11 0.23 6.89 16 13 N -0.48 -19.79 7.38 -48.40 -0.36 -20.15 16 14 H 0.44 16.59 8.96 -213.11 -1.91 14.68 16 15 N -0.32 -12.79 12.67 -47.04 -0.60 -13.38 16 16 C 0.07 2.72 7.22 43.61 0.32 3.03 16 17 C -0.33 -13.28 5.98 -20.08 -0.12 -13.40 16 18 C 0.16 5.51 6.73 71.30 0.48 5.99 16 19 O -0.39 -12.26 10.71 -148.98 -1.60 -13.85 16 20 C 0.06 1.46 6.74 72.17 0.49 1.95 16 21 C -0.06 -1.65 6.58 30.14 0.20 -1.46 16 22 H 0.07 3.62 6.08 -2.38 -0.01 3.60 16 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.09 3.32 8.08 -2.39 -0.02 3.30 16 28 H 0.05 1.27 8.08 -2.39 -0.02 1.25 16 29 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -60.00 261.04 1.82 -58.18 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -0.77 Total: 17.50 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 2.87 Total: -23.35 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -0.71 Total: -82.26 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.60 Total: -13.85 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -60.00 1.82 -58.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469765.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.933 kcal (2) G-P(sol) polarization free energy of solvation -60.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds