Wall clock time and date at job start Mon Mar 30 2020 03:08:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.37546 * 126.55676 * 2 1
4 4 C 1.39998 * 125.96157 * 359.97438 * 3 2 1
5 5 H 1.08000 * 119.99987 * 0.02562 * 4 3 2
6 6 C 1.40233 * 119.99669 * 179.97438 * 4 3 2
7 7 N 1.30688 * 120.00517 * 0.02562 * 6 4 3
8 8 Si 1.86800 * 120.00005 * 180.02562 * 6 4 3
9 9 H 1.48506 * 109.46989 * 0.02562 * 8 6 4
10 10 H 1.48498 * 109.47159 * 120.00205 * 8 6 4
11 11 H 1.48504 * 109.47482 * 240.00741 * 8 6 4
12 12 N 1.32977 * 108.07366 * 179.97438 * 3 2 1
13 13 C 1.32764 * 109.22479 * 359.97438 * 12 3 2
14 14 C 1.36218 * 108.61935 * 0.02562 * 13 12 3
15 15 C 1.50691 * 126.40164 * 180.02562 * 14 13 12
16 16 H 1.09000 * 110.33273 * 207.22423 * 15 14 13
17 17 C 1.54479 * 110.37572 * 84.97257 * 15 14 13
18 18 C 1.54500 * 104.06789 * 217.19049 * 17 15 14
19 19 C 1.54478 * 104.06263 * 359.97438 * 18 17 15
20 20 O 1.44426 * 110.37512 * 329.59186 * 15 14 13
21 21 H 1.08999 * 109.47297 * 270.02650 * 1 2 3
22 22 H 1.09008 * 109.47184 * 30.02502 * 1 2 3
23 23 H 1.08998 * 109.47574 * 150.02254 * 1 2 3
24 24 H 0.96999 * 120.00787 * 179.97438 * 7 6 4
25 25 H 1.07997 * 125.68841 * 180.02562 * 13 12 3
26 26 H 1.09000 * 110.50775 * 335.84105 * 17 15 14
27 27 H 1.09005 * 110.51076 * 98.53995 * 17 15 14
28 28 H 1.08996 * 110.51613 * 118.64315 * 18 17 15
29 29 H 1.09004 * 110.51279 * 241.21654 * 18 17 15
30 30 H 1.09005 * 110.37449 * 142.80715 * 19 18 17
31 31 H 1.09002 * 110.37738 * 265.03767 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2842 1.1049 0.0000
4 6 1.8637 2.4402 -0.0005
5 1 0.8094 2.6743 -0.0005
6 6 2.8115 3.4737 0.0001
7 7 4.0873 3.1905 0.0006
8 14 2.2504 5.2555 0.0001
9 1 0.7663 5.3071 0.0001
10 1 2.7689 5.9377 1.2130
11 1 2.7698 5.9381 -1.2121
12 7 3.5454 0.6833 0.0006
13 6 3.5626 -0.6442 0.0015
14 6 2.2774 -1.0958 0.0009
15 6 1.8358 -2.5366 0.0022
16 1 0.8563 -2.6329 -0.4661
17 6 1.7984 -3.0864 1.4453
18 6 2.2897 -4.5445 1.3046
19 6 2.5653 -4.7034 -0.2071
20 8 2.8054 -3.3603 -0.6814
21 1 -0.3634 0.0005 1.0276
22 1 -0.3634 0.8898 -0.5143
23 1 -0.3634 -0.8901 -0.5135
24 1 4.7429 3.9054 0.0007
25 1 4.4478 -1.2629 0.0025
26 1 2.4699 -2.5174 2.0883
27 1 0.7814 -3.0621 1.8370
28 1 3.2041 -4.6965 1.8779
29 1 1.5165 -5.2410 1.6289
30 1 3.4455 -5.3256 -0.3690
31 1 1.6987 -5.1357 -0.7075
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260474846.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:11
Heat of formation + Delta-G solvation = 9.860627 kcal
Electronic energy + Delta-G solvation = -15168.122421 eV
Core-core repulsion = 12643.489328 eV
Total energy + Delta-G solvation = -2524.633093 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.111 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.07580 -38.56977 -33.38024 -32.35719 -31.69275 -30.17657 -27.60447 -25.76784
-24.49313 -22.43663 -20.93040 -19.89862 -18.56916 -16.73589 -16.10590 -15.62184
-15.16250 -14.69783 -14.13866 -14.01064 -13.38451 -13.01562 -12.51704 -12.10201
-11.72423 -11.55801 -11.47351 -11.30909 -11.11875 -11.03214 -10.85255 -10.46948
-10.31583 -10.06727 -9.45250 -9.15478 -7.88143 -7.72746 -6.93392 -6.37539
-4.24035 3.04190 3.17217 3.20887 3.54129 3.99829 4.20421 4.59739
4.78906 4.93623 5.06831 5.20371 5.46200 5.57028 5.65764 5.71379
5.82343 5.90071 6.00897 6.07406 6.12781 6.18028 6.20951 6.52101
6.64544 7.05782 7.24428 7.44971 7.68770 8.15687 8.26510 8.60634
8.98590 9.35592 10.27625 10.55594
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.059865 B = 0.007085 C = 0.006656
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 467.605497 B = 3950.846131 C = 4205.525072
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.099 3.901
2 N -0.506 5.506
3 C 0.381 3.619
4 C -0.461 4.461
5 H 0.078 0.922
6 C 0.082 3.918
7 N -0.740 5.740
8 Si 0.911 3.089
9 H -0.264 1.264
10 H -0.275 1.275
11 H -0.275 1.275
12 N -0.518 5.518
13 C 0.025 3.975
14 C -0.158 4.158
15 C 0.181 3.819
16 H 0.051 0.949
17 C -0.145 4.145
18 C -0.155 4.155
19 C 0.043 3.957
20 O -0.361 6.361
21 H 0.048 0.952
22 H 0.073 0.927
23 H 0.055 0.945
24 H 0.272 0.728
25 H 0.135 0.865
26 H 0.079 0.921
27 H 0.066 0.934
28 H 0.072 0.928
29 H 0.069 0.931
30 H 0.086 0.914
31 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.022 -9.062 1.764 11.023
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 N -0.197 5.197
3 C 0.139 3.861
4 C -0.501 4.501
5 H 0.096 0.904
6 C -0.142 4.142
7 N -0.365 5.365
8 Si 0.735 3.265
9 H -0.188 1.188
10 H -0.200 1.200
11 H -0.200 1.200
12 N -0.238 5.238
13 C -0.130 4.130
14 C -0.269 4.269
15 C 0.122 3.878
16 H 0.069 0.931
17 C -0.183 4.183
18 C -0.192 4.192
19 C -0.034 4.034
20 O -0.279 6.279
21 H 0.066 0.934
22 H 0.092 0.908
23 H 0.074 0.926
24 H 0.083 0.917
25 H 0.152 0.848
26 H 0.098 0.902
27 H 0.085 0.915
28 H 0.091 0.909
29 H 0.087 0.913
30 H 0.105 0.895
31 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -5.068 -8.469 1.605 9.999
hybrid contribution -1.220 0.061 0.155 1.231
sum -6.287 -8.408 1.760 10.646
Atomic orbital electron populations
1.21426 0.80414 1.01940 1.00795 1.45016 1.04618 1.06220 1.63892
1.20245 0.83518 0.87291 0.95027 1.18149 0.94076 0.86942 1.50883
0.90386 1.25707 0.94412 1.00543 0.93553 1.70027 1.00960 1.33480
1.32042 0.86242 0.79709 0.82140 0.78370 1.18793 1.20035 1.20020
1.71331 1.17483 1.07202 1.27834 1.21908 0.93607 0.93246 1.04202
1.19738 0.92192 0.86572 1.28354 1.20512 0.90158 0.87275 0.89820
0.93123 1.23032 1.01595 0.94949 0.98712 1.22930 1.01673 0.97316
0.97325 1.23319 1.00766 0.86252 0.93110 1.89216 1.56467 1.16598
1.65660 0.93353 0.90836 0.92596 0.91743 0.84759 0.90207 0.91478
0.90917 0.91251 0.89545 0.92966
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.86 10.78 59.85 0.64 2.50 16
2 N -0.51 -12.38 3.21 -118.76 -0.38 -12.76 16
3 C 0.38 10.86 7.43 -155.60 -1.16 9.71 16
4 C -0.46 -12.70 9.00 -38.17 -0.34 -13.04 16
5 H 0.08 1.97 7.16 -52.49 -0.38 1.60 16
6 C 0.08 2.18 5.50 -17.29 -0.10 2.08 16
7 N -0.74 -21.06 11.90 55.56 0.66 -20.40 16
8 Si 0.91 19.32 29.56 -169.99 -5.03 14.29 16
9 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16
10 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
11 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16
12 N -0.52 -15.55 9.41 -12.72 -0.12 -15.67 16
13 C 0.02 0.66 11.42 -17.88 -0.20 0.46 16
14 C -0.16 -3.78 5.99 -81.28 -0.49 -4.26 16
15 C 0.18 3.44 3.56 -27.11 -0.10 3.34 16
16 H 0.05 0.91 7.19 -51.93 -0.37 0.54 16
17 C -0.14 -2.29 6.62 -25.17 -0.17 -2.46 16
18 C -0.15 -1.95 7.09 -25.17 -0.18 -2.13 16
19 C 0.04 0.58 7.63 37.93 0.29 0.87 16
20 O -0.36 -6.86 11.03 -35.23 -0.39 -7.25 16
21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16
22 H 0.07 1.33 7.38 -51.92 -0.38 0.95 16
23 H 0.06 0.90 7.17 -51.93 -0.37 0.53 16
24 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16
25 H 0.13 3.35 8.06 -52.49 -0.42 2.93 16
26 H 0.08 1.42 7.86 -51.93 -0.41 1.01 16
27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16
29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16
31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
LS Contribution 263.41 15.07 3.97 3.97
Total: -1.00 -32.70 263.41 -7.08 -39.78
By element:
Atomic # 1 Polarization: 4.97 SS G_CDS: -4.01 Total: 0.97 kcal
Atomic # 6 Polarization: -1.13 SS G_CDS: -1.79 Total: -2.93 kcal
Atomic # 7 Polarization: -48.99 SS G_CDS: 0.16 Total: -48.83 kcal
Atomic # 8 Polarization: -6.86 SS G_CDS: -0.39 Total: -7.25 kcal
Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal
Total LS contribution 3.97 Total: 3.97 kcal
Total: -32.70 -7.08 -39.78 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260474846.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.640 kcal
(2) G-P(sol) polarization free energy of solvation -32.696 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.944 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.861 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds