Wall clock time and date at job start Mon Mar 30 2020 03:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37546 * 126.55676 * 2 1 4 4 C 1.39998 * 125.96157 * 359.97438 * 3 2 1 5 5 H 1.08000 * 119.99987 * 0.02562 * 4 3 2 6 6 C 1.40233 * 119.99669 * 179.97438 * 4 3 2 7 7 N 1.30688 * 120.00517 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00005 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46989 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47159 * 120.00205 * 8 6 4 11 11 H 1.48504 * 109.47482 * 240.00741 * 8 6 4 12 12 N 1.32977 * 108.07366 * 179.97438 * 3 2 1 13 13 C 1.32764 * 109.22479 * 359.97438 * 12 3 2 14 14 C 1.36218 * 108.61935 * 0.02562 * 13 12 3 15 15 C 1.50691 * 126.40164 * 180.02562 * 14 13 12 16 16 H 1.09000 * 110.33273 * 207.22423 * 15 14 13 17 17 C 1.54479 * 110.37572 * 84.97257 * 15 14 13 18 18 C 1.54500 * 104.06789 * 217.19049 * 17 15 14 19 19 C 1.54478 * 104.06263 * 359.97438 * 18 17 15 20 20 O 1.44426 * 110.37512 * 329.59186 * 15 14 13 21 21 H 1.08999 * 109.47297 * 270.02650 * 1 2 3 22 22 H 1.09008 * 109.47184 * 30.02502 * 1 2 3 23 23 H 1.08998 * 109.47574 * 150.02254 * 1 2 3 24 24 H 0.96999 * 120.00787 * 179.97438 * 7 6 4 25 25 H 1.07997 * 125.68841 * 180.02562 * 13 12 3 26 26 H 1.09000 * 110.50775 * 335.84105 * 17 15 14 27 27 H 1.09005 * 110.51076 * 98.53995 * 17 15 14 28 28 H 1.08996 * 110.51613 * 118.64315 * 18 17 15 29 29 H 1.09004 * 110.51279 * 241.21654 * 18 17 15 30 30 H 1.09005 * 110.37449 * 142.80715 * 19 18 17 31 31 H 1.09002 * 110.37738 * 265.03767 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2842 1.1049 0.0000 4 6 1.8637 2.4402 -0.0005 5 1 0.8094 2.6743 -0.0005 6 6 2.8115 3.4737 0.0001 7 7 4.0873 3.1905 0.0006 8 14 2.2504 5.2555 0.0001 9 1 0.7663 5.3071 0.0001 10 1 2.7689 5.9377 1.2130 11 1 2.7698 5.9381 -1.2121 12 7 3.5454 0.6833 0.0006 13 6 3.5626 -0.6442 0.0015 14 6 2.2774 -1.0958 0.0009 15 6 1.8358 -2.5366 0.0022 16 1 0.8563 -2.6329 -0.4661 17 6 1.7984 -3.0864 1.4453 18 6 2.2897 -4.5445 1.3046 19 6 2.5653 -4.7034 -0.2071 20 8 2.8054 -3.3603 -0.6814 21 1 -0.3634 0.0005 1.0276 22 1 -0.3634 0.8898 -0.5143 23 1 -0.3634 -0.8901 -0.5135 24 1 4.7429 3.9054 0.0007 25 1 4.4478 -1.2629 0.0025 26 1 2.4699 -2.5174 2.0883 27 1 0.7814 -3.0621 1.8370 28 1 3.2041 -4.6965 1.8779 29 1 1.5165 -5.2410 1.6289 30 1 3.4455 -5.3256 -0.3690 31 1 1.6987 -5.1357 -0.7075 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260474846.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:11 Heat of formation + Delta-G solvation = 9.860627 kcal Electronic energy + Delta-G solvation = -15168.122421 eV Core-core repulsion = 12643.489328 eV Total energy + Delta-G solvation = -2524.633093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.07580 -38.56977 -33.38024 -32.35719 -31.69275 -30.17657 -27.60447 -25.76784 -24.49313 -22.43663 -20.93040 -19.89862 -18.56916 -16.73589 -16.10590 -15.62184 -15.16250 -14.69783 -14.13866 -14.01064 -13.38451 -13.01562 -12.51704 -12.10201 -11.72423 -11.55801 -11.47351 -11.30909 -11.11875 -11.03214 -10.85255 -10.46948 -10.31583 -10.06727 -9.45250 -9.15478 -7.88143 -7.72746 -6.93392 -6.37539 -4.24035 3.04190 3.17217 3.20887 3.54129 3.99829 4.20421 4.59739 4.78906 4.93623 5.06831 5.20371 5.46200 5.57028 5.65764 5.71379 5.82343 5.90071 6.00897 6.07406 6.12781 6.18028 6.20951 6.52101 6.64544 7.05782 7.24428 7.44971 7.68770 8.15687 8.26510 8.60634 8.98590 9.35592 10.27625 10.55594 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.059865 B = 0.007085 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.605497 B = 3950.846131 C = 4205.525072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.506 5.506 3 C 0.381 3.619 4 C -0.461 4.461 5 H 0.078 0.922 6 C 0.082 3.918 7 N -0.740 5.740 8 Si 0.911 3.089 9 H -0.264 1.264 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.518 5.518 13 C 0.025 3.975 14 C -0.158 4.158 15 C 0.181 3.819 16 H 0.051 0.949 17 C -0.145 4.145 18 C -0.155 4.155 19 C 0.043 3.957 20 O -0.361 6.361 21 H 0.048 0.952 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.272 0.728 25 H 0.135 0.865 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 -9.062 1.764 11.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.197 5.197 3 C 0.139 3.861 4 C -0.501 4.501 5 H 0.096 0.904 6 C -0.142 4.142 7 N -0.365 5.365 8 Si 0.735 3.265 9 H -0.188 1.188 10 H -0.200 1.200 11 H -0.200 1.200 12 N -0.238 5.238 13 C -0.130 4.130 14 C -0.269 4.269 15 C 0.122 3.878 16 H 0.069 0.931 17 C -0.183 4.183 18 C -0.192 4.192 19 C -0.034 4.034 20 O -0.279 6.279 21 H 0.066 0.934 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.152 0.848 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.068 -8.469 1.605 9.999 hybrid contribution -1.220 0.061 0.155 1.231 sum -6.287 -8.408 1.760 10.646 Atomic orbital electron populations 1.21426 0.80414 1.01940 1.00795 1.45016 1.04618 1.06220 1.63892 1.20245 0.83518 0.87291 0.95027 1.18149 0.94076 0.86942 1.50883 0.90386 1.25707 0.94412 1.00543 0.93553 1.70027 1.00960 1.33480 1.32042 0.86242 0.79709 0.82140 0.78370 1.18793 1.20035 1.20020 1.71331 1.17483 1.07202 1.27834 1.21908 0.93607 0.93246 1.04202 1.19738 0.92192 0.86572 1.28354 1.20512 0.90158 0.87275 0.89820 0.93123 1.23032 1.01595 0.94949 0.98712 1.22930 1.01673 0.97316 0.97325 1.23319 1.00766 0.86252 0.93110 1.89216 1.56467 1.16598 1.65660 0.93353 0.90836 0.92596 0.91743 0.84759 0.90207 0.91478 0.90917 0.91251 0.89545 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.86 10.78 59.85 0.64 2.50 16 2 N -0.51 -12.38 3.21 -118.76 -0.38 -12.76 16 3 C 0.38 10.86 7.43 -155.60 -1.16 9.71 16 4 C -0.46 -12.70 9.00 -38.17 -0.34 -13.04 16 5 H 0.08 1.97 7.16 -52.49 -0.38 1.60 16 6 C 0.08 2.18 5.50 -17.29 -0.10 2.08 16 7 N -0.74 -21.06 11.90 55.56 0.66 -20.40 16 8 Si 0.91 19.32 29.56 -169.99 -5.03 14.29 16 9 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 10 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 11 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 12 N -0.52 -15.55 9.41 -12.72 -0.12 -15.67 16 13 C 0.02 0.66 11.42 -17.88 -0.20 0.46 16 14 C -0.16 -3.78 5.99 -81.28 -0.49 -4.26 16 15 C 0.18 3.44 3.56 -27.11 -0.10 3.34 16 16 H 0.05 0.91 7.19 -51.93 -0.37 0.54 16 17 C -0.14 -2.29 6.62 -25.17 -0.17 -2.46 16 18 C -0.15 -1.95 7.09 -25.17 -0.18 -2.13 16 19 C 0.04 0.58 7.63 37.93 0.29 0.87 16 20 O -0.36 -6.86 11.03 -35.23 -0.39 -7.25 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.07 1.33 7.38 -51.92 -0.38 0.95 16 23 H 0.06 0.90 7.17 -51.93 -0.37 0.53 16 24 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 25 H 0.13 3.35 8.06 -52.49 -0.42 2.93 16 26 H 0.08 1.42 7.86 -51.93 -0.41 1.01 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 263.41 15.07 3.97 3.97 Total: -1.00 -32.70 263.41 -7.08 -39.78 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.01 Total: 0.97 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.79 Total: -2.93 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.16 Total: -48.83 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.39 Total: -7.25 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.70 -7.08 -39.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260474846.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.640 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds