Wall clock time and date at job start Mon Mar 30 2020 02:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36012 * 117.00277 * 2 1 4 4 C 1.39259 * 120.39003 * 179.97438 * 3 2 1 5 5 C 1.38302 * 118.46203 * 179.72709 * 4 3 2 6 6 C 1.39093 * 119.15097 * 0.25570 * 5 4 3 7 7 N 1.39256 * 119.64523 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00006 * 0.02562 * 7 6 5 9 9 H 1.08997 * 109.46901 * 35.00059 * 8 7 6 10 10 C 1.52999 * 109.47254 * 275.00198 * 8 7 6 11 11 C 1.50700 * 109.47086 * 154.99887 * 8 7 6 12 12 H 1.07999 * 119.99935 * 0.02562 * 11 8 7 13 13 C 1.37874 * 119.99895 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00479 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99904 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47000 * 89.99893 * 15 13 11 17 17 H 1.48498 * 109.47256 * 210.00011 * 15 13 11 18 18 H 1.48504 * 109.47069 * 330.00408 * 15 13 11 19 19 N 1.32329 * 120.70936 * 0.02562 * 6 5 4 20 20 C 1.32004 * 121.67290 * 359.97438 * 19 6 5 21 21 H 1.09001 * 109.46693 * 299.99655 * 1 2 3 22 22 H 1.08996 * 109.47113 * 59.99460 * 1 2 3 23 23 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 24 24 H 1.08002 * 120.77244 * 0.02562 * 4 3 2 25 25 H 1.07990 * 120.42668 * 180.27697 * 5 4 3 26 26 H 0.97003 * 119.99509 * 180.02562 * 7 6 5 27 27 H 1.08998 * 109.47407 * 59.99874 * 10 8 7 28 28 H 1.09006 * 109.46884 * 180.02562 * 10 8 7 29 29 H 1.08997 * 109.47053 * 299.99768 * 10 8 7 30 30 H 0.96997 * 120.00257 * 180.02562 * 14 13 11 31 31 H 1.08006 * 119.60643 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 3.4367 1.2941 0.0005 5 6 4.0229 2.5468 -0.0053 6 6 3.2098 3.6753 -0.0060 7 7 3.7890 4.9417 -0.0113 8 6 5.2474 5.0800 -0.0166 9 1 5.6866 4.2747 -0.6055 10 6 5.7720 5.0067 1.4188 11 6 5.6239 6.4078 -0.6219 12 1 4.8537 7.0814 -0.9676 13 6 6.9514 6.7626 -0.7343 14 7 7.8893 5.9421 -0.3138 15 14 7.4180 8.4088 -1.4839 16 1 7.4908 9.4367 -0.4147 17 1 8.7402 8.2926 -2.1497 18 1 6.3937 8.8058 -2.4832 19 7 1.8916 3.5585 -0.0007 20 6 1.3004 2.3783 0.0049 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 4.0432 0.4004 0.0005 25 1 5.0981 2.6475 -0.0095 26 1 3.2268 5.7321 -0.0114 27 1 5.4997 4.0463 1.8566 28 1 6.8571 5.1101 1.4148 29 1 5.3328 5.8120 2.0076 30 1 8.8233 6.1919 -0.3926 31 1 0.2218 2.3218 0.0087 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260495009.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:33 Heat of formation + Delta-G solvation = 0.297219 kcal Electronic energy + Delta-G solvation = -14682.966430 eV Core-core repulsion = 12157.918636 eV Total energy + Delta-G solvation = -2525.047794 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.08533 -37.95960 -35.50086 -32.63972 -31.90516 -29.58237 -27.89591 -26.76994 -25.28892 -23.02209 -22.16123 -20.20812 -17.91022 -17.26738 -16.38387 -15.96114 -15.55913 -14.88620 -14.25345 -14.05404 -13.58536 -13.22374 -12.77143 -12.48715 -12.13489 -11.97531 -11.68511 -11.42650 -11.09424 -10.98393 -10.74802 -10.34631 -10.23768 -9.25549 -9.20675 -8.97750 -8.87894 -8.50733 -6.60990 -6.19193 -4.27097 1.70156 2.01074 3.22605 3.29515 3.32642 3.53771 4.10899 4.37616 4.42556 5.02508 5.06518 5.13898 5.20212 5.27721 5.47771 5.52368 5.88308 6.10938 6.29586 6.46749 6.67412 6.86087 6.92653 7.01101 7.34380 7.60220 7.65557 7.75783 7.93147 8.08533 8.65399 8.66663 8.97075 9.40637 10.86889 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.067040 B = 0.005710 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.559426 B = 4902.131865 C = 5080.191394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C -0.018 4.018 4 C -0.060 4.060 5 C -0.203 4.203 6 C 0.390 3.610 7 N -0.702 5.702 8 C 0.270 3.730 9 H 0.042 0.958 10 C -0.154 4.154 11 C -0.530 4.530 12 H 0.063 0.937 13 C 0.067 3.933 14 N -0.887 5.887 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 N -0.533 5.533 20 C 0.070 3.930 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.093 0.907 24 H 0.133 0.867 25 H 0.144 0.856 26 H 0.395 0.605 27 H 0.013 0.987 28 H 0.092 0.908 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.396 -8.174 1.045 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C -0.068 4.068 4 C -0.086 4.086 5 C -0.229 4.229 6 C 0.151 3.849 7 N -0.330 5.330 8 C 0.168 3.832 9 H 0.060 0.940 10 C -0.213 4.213 11 C -0.568 4.568 12 H 0.081 0.919 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 N -0.253 5.253 20 C -0.088 4.088 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.111 0.889 24 H 0.151 0.849 25 H 0.162 0.838 26 H 0.229 0.771 27 H 0.032 0.968 28 H 0.110 0.890 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.353 -7.610 1.050 12.104 hybrid contribution 0.332 0.551 -0.349 0.732 sum -9.021 -7.059 0.701 11.476 Atomic orbital electron populations 1.22912 0.79507 1.03192 1.00942 1.86002 1.20313 1.26639 1.90586 1.19552 0.92974 0.85158 1.09069 1.20596 0.91344 0.97925 0.98775 1.21481 1.01599 0.90776 1.09016 1.18602 0.87678 0.87684 0.90956 1.45434 1.08629 1.02432 1.76484 1.18798 0.73127 0.97763 0.93521 0.94048 1.22209 1.04500 0.96956 0.97602 1.21191 0.92437 1.02228 1.40978 0.91929 1.24863 0.96114 0.97523 0.95123 1.69867 1.00454 1.35976 1.46173 0.86415 0.77918 0.83307 0.79320 1.20504 1.21032 1.19805 1.67099 1.10460 1.26793 1.20994 1.22342 0.99285 0.86745 1.00411 0.93148 0.93136 0.88864 0.84901 0.83836 0.77142 0.96769 0.88976 0.95032 0.92517 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.82 101.05 0.99 1.29 16 2 O -0.32 -4.62 10.51 -19.78 -0.21 -4.83 16 3 C -0.02 -0.30 6.71 -39.12 -0.26 -0.56 16 4 C -0.06 -1.01 10.12 -39.18 -0.40 -1.41 16 5 C -0.20 -3.89 8.83 -39.24 -0.35 -4.24 16 6 C 0.39 8.04 7.63 -154.85 -1.18 6.86 16 7 N -0.70 -15.33 5.25 -55.02 -0.29 -15.62 16 8 C 0.27 6.54 2.25 -69.08 -0.16 6.38 16 9 H 0.04 1.07 6.45 -51.93 -0.33 0.74 16 10 C -0.15 -3.61 9.18 37.16 0.34 -3.27 16 11 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 13 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 14 N -0.89 -23.96 11.32 55.43 0.63 -23.34 16 15 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 N -0.53 -10.40 10.39 -12.28 -0.13 -10.53 16 20 C 0.07 1.16 10.21 -17.39 -0.18 0.99 16 21 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 22 H 0.05 0.45 7.68 -51.93 -0.40 0.05 16 23 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 25 H 0.14 2.81 6.07 -52.49 -0.32 2.49 16 26 H 0.39 8.38 8.66 -40.82 -0.35 8.03 16 27 H 0.01 0.29 7.66 -51.93 -0.40 -0.10 16 28 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.15 1.93 6.30 -52.48 -0.33 1.60 16 LS Contribution 264.06 15.07 3.98 3.98 Total: -1.00 -28.14 264.06 -6.28 -34.42 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -3.66 Total: 6.95 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.58 Total: -6.49 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.21 Total: -49.48 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.21 Total: -4.83 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.14 -6.28 -34.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495009.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.718 kcal (2) G-P(sol) polarization free energy of solvation -28.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds