Wall clock time and date at job start Mon Mar 30 2020 02:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36012 * 117.00277 * 2 1 4 4 C 1.39259 * 120.39003 * 179.97438 * 3 2 1 5 5 C 1.38302 * 118.46203 * 179.72709 * 4 3 2 6 6 C 1.39093 * 119.15097 * 0.25570 * 5 4 3 7 7 N 1.39256 * 119.64523 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00006 * 0.02562 * 7 6 5 9 9 H 1.08997 * 109.46901 * 35.00059 * 8 7 6 10 10 C 1.52999 * 109.47254 * 275.00198 * 8 7 6 11 11 C 1.50700 * 109.47086 * 154.99887 * 8 7 6 12 12 H 1.07999 * 119.99935 * 0.02562 * 11 8 7 13 13 C 1.37874 * 119.99895 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00479 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99904 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47000 * 89.99893 * 15 13 11 17 17 H 1.48498 * 109.47256 * 210.00011 * 15 13 11 18 18 H 1.48504 * 109.47069 * 330.00408 * 15 13 11 19 19 N 1.32329 * 120.70936 * 0.02562 * 6 5 4 20 20 C 1.32004 * 121.67290 * 359.97438 * 19 6 5 21 21 H 1.09001 * 109.46693 * 299.99655 * 1 2 3 22 22 H 1.08996 * 109.47113 * 59.99460 * 1 2 3 23 23 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 24 24 H 1.08002 * 120.77244 * 0.02562 * 4 3 2 25 25 H 1.07990 * 120.42668 * 180.27697 * 5 4 3 26 26 H 0.97003 * 119.99509 * 180.02562 * 7 6 5 27 27 H 1.08998 * 109.47407 * 59.99874 * 10 8 7 28 28 H 1.09006 * 109.46884 * 180.02562 * 10 8 7 29 29 H 1.08997 * 109.47053 * 299.99768 * 10 8 7 30 30 H 0.96997 * 120.00257 * 180.02562 * 14 13 11 31 31 H 1.08006 * 119.60643 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 3.4367 1.2941 0.0005 5 6 4.0229 2.5468 -0.0053 6 6 3.2098 3.6753 -0.0060 7 7 3.7890 4.9417 -0.0113 8 6 5.2474 5.0800 -0.0166 9 1 5.6866 4.2747 -0.6055 10 6 5.7720 5.0067 1.4188 11 6 5.6239 6.4078 -0.6219 12 1 4.8537 7.0814 -0.9676 13 6 6.9514 6.7626 -0.7343 14 7 7.8893 5.9421 -0.3138 15 14 7.4180 8.4088 -1.4839 16 1 7.4908 9.4367 -0.4147 17 1 8.7402 8.2926 -2.1497 18 1 6.3937 8.8058 -2.4832 19 7 1.8916 3.5585 -0.0007 20 6 1.3004 2.3783 0.0049 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 4.0432 0.4004 0.0005 25 1 5.0981 2.6475 -0.0095 26 1 3.2268 5.7321 -0.0114 27 1 5.4997 4.0463 1.8566 28 1 6.8571 5.1101 1.4148 29 1 5.3328 5.8120 2.0076 30 1 8.8233 6.1919 -0.3926 31 1 0.2218 2.3218 0.0087 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260495009.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:32 Heat of formation + Delta-G solvation = -17.625299 kcal Electronic energy + Delta-G solvation = -14683.743609 eV Core-core repulsion = 12157.918636 eV Total energy + Delta-G solvation = -2525.824972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.43482 -39.24135 -37.19218 -34.48901 -33.29815 -31.28718 -29.20745 -27.93956 -27.27108 -24.39505 -23.71257 -21.91564 -19.34120 -18.73915 -17.80113 -17.69393 -16.70921 -16.60253 -15.73503 -15.49781 -14.97632 -14.70736 -14.22740 -14.10603 -13.73005 -13.56357 -13.06393 -12.89229 -12.63434 -12.61347 -12.32534 -12.21375 -12.08607 -11.09859 -10.77818 -10.57078 -10.34334 -10.29807 -8.21876 -8.09057 -6.33266 0.31313 0.60463 1.44017 1.45064 1.55021 2.33236 2.45995 2.69592 2.98730 3.12353 3.73651 3.87803 4.09727 4.36670 4.49431 4.54543 4.67193 4.78564 4.81980 4.92983 5.00248 5.07645 5.12888 5.41070 5.54655 5.66329 5.85582 6.07168 6.29541 6.46006 6.73303 7.03013 7.28929 7.44280 8.86984 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.067040 B = 0.005710 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.559426 B = 4902.131865 C = 5080.191394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C -0.004 4.004 4 C -0.062 4.062 5 C -0.217 4.217 6 C 0.365 3.635 7 N -0.711 5.711 8 C 0.281 3.719 9 H 0.019 0.981 10 C -0.140 4.140 11 C -0.549 4.549 12 H 0.059 0.941 13 C 0.023 3.977 14 N -0.911 5.911 15 Si 0.965 3.035 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.271 1.271 19 N -0.545 5.545 20 C 0.067 3.933 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.121 0.879 24 H 0.156 0.844 25 H 0.131 0.869 26 H 0.394 0.606 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.028 0.972 30 H 0.267 0.733 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.872 -8.990 0.901 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C -0.053 4.053 4 C -0.088 4.088 5 C -0.243 4.243 6 C 0.128 3.872 7 N -0.341 5.341 8 C 0.177 3.823 9 H 0.037 0.963 10 C -0.199 4.199 11 C -0.587 4.587 12 H 0.078 0.922 13 C -0.178 4.178 14 N -0.549 5.549 15 Si 0.791 3.209 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.196 1.196 19 N -0.265 5.265 20 C -0.091 4.091 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.139 0.861 24 H 0.174 0.826 25 H 0.149 0.851 26 H 0.228 0.772 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.866 -8.461 0.910 13.802 hybrid contribution 0.618 0.601 -0.301 0.913 sum -10.248 -7.860 0.609 12.930 Atomic orbital electron populations 1.23313 0.76813 1.05571 1.02032 1.86016 1.23029 1.25263 1.90054 1.19618 0.92865 0.86037 1.06771 1.20849 0.92297 0.97790 0.97853 1.21434 1.01020 0.91544 1.10286 1.18715 0.88479 0.87357 0.92600 1.45119 1.07486 1.03151 1.78345 1.18462 0.74592 0.96123 0.93135 0.96345 1.22021 1.02934 0.97436 0.97484 1.21490 0.92763 1.03089 1.41393 0.92242 1.25618 0.96041 1.00676 0.95457 1.69976 1.00694 1.37440 1.46806 0.85444 0.77518 0.79418 0.78555 1.19939 1.20651 1.19591 1.67094 1.09921 1.28421 1.21078 1.22913 1.00931 0.85952 0.99334 0.91948 0.92032 0.86061 0.82591 0.85103 0.77211 0.95563 0.90990 0.95309 0.92381 0.80129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.82 113.37 1.11 1.38 16 2 O -0.33 -8.37 10.51 -93.69 -0.98 -9.35 16 3 C 0.00 -0.11 6.71 22.57 0.15 0.04 16 4 C -0.06 -2.00 10.12 22.53 0.23 -1.77 16 5 C -0.22 -8.38 8.83 22.49 0.20 -8.18 16 6 C 0.37 15.14 7.63 132.99 1.02 16.16 16 7 N -0.71 -31.76 5.25 -327.98 -1.72 -33.48 16 8 C 0.28 13.95 2.25 44.25 0.10 14.05 16 9 H 0.02 1.01 6.45 -2.39 -0.02 0.99 16 10 C -0.14 -6.71 9.18 71.98 0.66 -6.05 16 11 C -0.55 -29.28 8.73 25.60 0.22 -29.06 16 12 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 13 C 0.02 1.20 5.30 84.65 0.45 1.65 16 14 N -0.91 -49.94 11.32 21.45 0.24 -49.70 16 15 Si 0.97 42.09 29.54 68.60 2.03 44.11 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 N -0.55 -20.73 10.39 -192.77 -2.00 -22.73 16 20 C 0.07 2.04 10.21 84.72 0.87 2.91 16 21 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 22 H 0.06 0.85 7.68 -2.39 -0.02 0.83 16 23 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.16 4.21 8.06 -2.91 -0.02 4.18 16 25 H 0.13 5.31 6.07 -2.92 -0.02 5.29 16 26 H 0.39 17.14 8.66 -92.71 -0.80 16.33 16 27 H 0.03 1.14 7.66 -2.39 -0.02 1.12 16 28 H 0.07 3.74 6.07 -2.38 -0.01 3.73 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.18 4.12 6.30 -2.91 -0.02 4.10 16 Total: -1.00 -59.93 264.06 2.91 -57.02 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.34 Total: 22.99 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 5.00 Total: -8.86 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -3.48 Total: -105.91 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.98 Total: -9.35 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -59.93 2.91 -57.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495009.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.399 kcal (2) G-P(sol) polarization free energy of solvation -59.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds