Wall clock time and date at job start Mon Mar 30 2020 02:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36016 * 116.99645 * 2 1 4 4 C 1.39267 * 120.39004 * 179.97438 * 3 2 1 5 5 C 1.38288 * 118.46688 * 180.02562 * 4 3 2 6 6 C 1.39099 * 119.15197 * 0.02562 * 5 4 3 7 7 N 1.39253 * 119.64537 * 180.02562 * 6 5 4 8 8 C 1.46491 * 120.00126 * 359.97438 * 7 6 5 9 9 H 1.08994 * 109.47507 * 324.99990 * 8 7 6 10 10 C 1.52996 * 109.47168 * 85.00434 * 8 7 6 11 11 C 1.50702 * 109.46957 * 205.00018 * 8 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 N 1.32332 * 120.70097 * 0.27218 * 6 5 4 20 20 C 1.32004 * 121.67846 * 359.43967 * 19 6 5 21 21 H 1.08998 * 109.47256 * 299.99885 * 1 2 3 22 22 H 1.09004 * 109.46958 * 59.99910 * 1 2 3 23 23 H 1.09000 * 109.46587 * 179.97438 * 1 2 3 24 24 H 1.08012 * 120.76478 * 0.02562 * 4 3 2 25 25 H 1.08000 * 120.42705 * 180.02562 * 5 4 3 26 26 H 0.97003 * 119.99654 * 180.02562 * 7 6 5 27 27 H 1.09003 * 109.47532 * 59.99962 * 10 8 7 28 28 H 1.09001 * 109.47094 * 179.97438 * 10 8 7 29 29 H 1.09003 * 109.46851 * 299.99887 * 10 8 7 30 30 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 31 31 H 1.07999 * 119.60440 * 180.26127 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 3.4367 1.2944 0.0005 5 6 4.0227 2.5470 0.0011 6 6 3.2095 3.6755 0.0016 7 7 3.7888 4.9418 0.0016 8 6 5.2471 5.0802 0.0016 9 1 5.6884 4.2766 0.5910 10 6 5.7667 5.0034 -1.4354 11 6 5.6255 6.4097 0.6020 12 1 4.8566 7.0839 0.9493 13 6 6.9537 6.7627 0.7138 14 7 7.8901 5.9415 0.2912 15 14 7.4230 8.4072 1.4651 16 1 6.9146 8.4779 2.8586 17 1 8.9015 8.5455 1.4695 18 1 6.8259 9.5059 0.6640 19 7 1.8914 3.5585 0.0070 20 6 1.3002 2.3782 0.0011 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 4.0431 0.4006 0.0005 25 1 5.0980 2.6477 0.0011 26 1 3.2265 5.7323 0.0023 27 1 5.3255 5.8071 -2.0249 28 1 6.8518 5.1068 -1.4354 29 1 5.4930 4.0418 -1.8697 30 1 8.8245 6.1900 0.3695 31 1 0.2217 2.3217 0.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260495011.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:34 Heat of formation + Delta-G solvation = 0.305879 kcal Electronic energy + Delta-G solvation = -14682.854301 eV Core-core repulsion = 12157.806883 eV Total energy + Delta-G solvation = -2525.047418 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.08515 -37.95924 -35.50005 -32.63801 -31.90476 -29.58304 -27.89559 -26.76980 -25.28620 -23.02095 -22.16067 -20.20680 -17.90997 -17.26743 -16.38346 -15.95826 -15.55863 -14.88532 -14.25238 -14.05611 -13.58342 -13.22724 -12.76995 -12.48538 -12.13297 -11.97220 -11.68481 -11.42355 -11.07799 -10.98933 -10.76864 -10.33752 -10.23749 -9.25636 -9.21421 -8.97445 -8.88150 -8.50364 -6.60965 -6.18965 -4.26924 1.70218 2.01074 3.24360 3.29028 3.31353 3.53819 4.10880 4.37728 4.42590 5.02550 5.06536 5.14057 5.20216 5.27725 5.47765 5.52373 5.88294 6.10938 6.29619 6.46773 6.67488 6.86138 6.92668 7.01178 7.34461 7.60173 7.65583 7.75755 7.93247 8.08623 8.65434 8.66573 8.97061 9.40690 10.87087 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.066994 B = 0.005711 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.849953 B = 4901.279284 C = 5079.243244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C -0.018 4.018 4 C -0.060 4.060 5 C -0.203 4.203 6 C 0.390 3.610 7 N -0.702 5.702 8 C 0.271 3.729 9 H 0.042 0.958 10 C -0.154 4.154 11 C -0.531 4.531 12 H 0.062 0.938 13 C 0.067 3.933 14 N -0.887 5.887 15 Si 0.903 3.097 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.276 1.276 19 N -0.534 5.534 20 C 0.070 3.930 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.093 0.907 24 H 0.133 0.867 25 H 0.144 0.856 26 H 0.395 0.605 27 H 0.031 0.969 28 H 0.092 0.908 29 H 0.013 0.987 30 H 0.265 0.735 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 -8.175 -1.016 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C -0.068 4.068 4 C -0.086 4.086 5 C -0.229 4.229 6 C 0.151 3.849 7 N -0.330 5.330 8 C 0.168 3.832 9 H 0.059 0.941 10 C -0.212 4.212 11 C -0.569 4.569 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 N -0.254 5.254 20 C -0.088 4.088 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.111 0.889 24 H 0.151 0.849 25 H 0.162 0.838 26 H 0.229 0.771 27 H 0.050 0.950 28 H 0.110 0.890 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.335 -7.611 -1.022 12.087 hybrid contribution 0.322 0.549 0.364 0.733 sum -9.013 -7.062 -0.658 11.469 Atomic orbital electron populations 1.22913 0.79509 1.03191 1.00941 1.86004 1.20314 1.26635 1.90588 1.19552 0.92976 0.85157 1.09075 1.20596 0.91344 0.97925 0.98773 1.21482 1.01598 0.90777 1.09012 1.18603 0.87678 0.87683 0.90954 1.45432 1.08632 1.02431 1.76479 1.18791 0.73127 0.97734 0.93522 0.94061 1.22207 1.04477 0.96946 0.97612 1.21156 0.92421 1.02179 1.41166 0.91983 1.24863 0.96114 0.97524 0.95107 1.69862 1.00523 1.36074 1.46006 0.86470 0.77320 0.83385 0.79742 1.20134 1.21097 1.20117 1.67098 1.10464 1.26793 1.21001 1.22337 0.99284 0.86746 1.00413 0.93131 0.93153 0.88865 0.84901 0.83835 0.77141 0.95024 0.88993 0.96774 0.92460 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.82 101.05 0.99 1.29 16 2 O -0.32 -4.62 10.51 -19.79 -0.21 -4.83 16 3 C -0.02 -0.30 6.71 -39.12 -0.26 -0.56 16 4 C -0.06 -1.01 10.12 -39.18 -0.40 -1.41 16 5 C -0.20 -3.89 8.83 -39.24 -0.35 -4.24 16 6 C 0.39 8.04 7.64 -154.85 -1.18 6.86 16 7 N -0.70 -15.33 5.25 -55.02 -0.29 -15.62 16 8 C 0.27 6.55 2.24 -69.09 -0.15 6.39 16 9 H 0.04 1.07 6.45 -51.93 -0.33 0.73 16 10 C -0.15 -3.60 9.19 37.16 0.34 -3.26 16 11 C -0.53 -13.91 8.73 -34.44 -0.30 -14.21 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 13 C 0.07 1.76 5.31 -17.82 -0.09 1.67 16 14 N -0.89 -23.96 11.33 55.43 0.63 -23.34 16 15 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 N -0.53 -10.40 10.39 -12.28 -0.13 -10.53 16 20 C 0.07 1.16 10.21 -17.40 -0.18 0.99 16 21 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 22 H 0.05 0.45 7.68 -51.93 -0.40 0.05 16 23 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.13 1.92 8.06 -52.48 -0.42 1.49 16 25 H 0.14 2.81 6.07 -52.49 -0.32 2.49 16 26 H 0.39 8.38 8.66 -40.82 -0.35 8.03 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 2.33 6.08 -51.93 -0.32 2.01 16 29 H 0.01 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.15 1.93 6.30 -52.49 -0.33 1.60 16 LS Contribution 264.08 15.07 3.98 3.98 Total: -1.00 -28.12 264.08 -6.28 -34.39 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -3.66 Total: 6.98 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.58 Total: -6.49 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.21 Total: -49.49 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.21 Total: -4.83 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.12 -6.28 -34.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495011.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.700 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds