Wall clock time and date at job start Mon Mar 30 2020 02:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36016 * 116.99645 * 2 1 4 4 C 1.39267 * 120.39004 * 179.97438 * 3 2 1 5 5 C 1.38288 * 118.46688 * 180.02562 * 4 3 2 6 6 C 1.39099 * 119.15197 * 0.02562 * 5 4 3 7 7 N 1.39253 * 119.64537 * 180.02562 * 6 5 4 8 8 C 1.46491 * 120.00126 * 359.97438 * 7 6 5 9 9 H 1.08994 * 109.47507 * 324.99990 * 8 7 6 10 10 C 1.52996 * 109.47168 * 85.00434 * 8 7 6 11 11 C 1.50702 * 109.46957 * 205.00018 * 8 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 N 1.32332 * 120.70097 * 0.27218 * 6 5 4 20 20 C 1.32004 * 121.67846 * 359.43967 * 19 6 5 21 21 H 1.08998 * 109.47256 * 299.99885 * 1 2 3 22 22 H 1.09004 * 109.46958 * 59.99910 * 1 2 3 23 23 H 1.09000 * 109.46587 * 179.97438 * 1 2 3 24 24 H 1.08012 * 120.76478 * 0.02562 * 4 3 2 25 25 H 1.08000 * 120.42705 * 180.02562 * 5 4 3 26 26 H 0.97003 * 119.99654 * 180.02562 * 7 6 5 27 27 H 1.09003 * 109.47532 * 59.99962 * 10 8 7 28 28 H 1.09001 * 109.47094 * 179.97438 * 10 8 7 29 29 H 1.09003 * 109.46851 * 299.99887 * 10 8 7 30 30 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 31 31 H 1.07999 * 119.60440 * 180.26127 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 3.4367 1.2944 0.0005 5 6 4.0227 2.5470 0.0011 6 6 3.2095 3.6755 0.0016 7 7 3.7888 4.9418 0.0016 8 6 5.2471 5.0802 0.0016 9 1 5.6884 4.2766 0.5910 10 6 5.7667 5.0034 -1.4354 11 6 5.6255 6.4097 0.6020 12 1 4.8566 7.0839 0.9493 13 6 6.9537 6.7627 0.7138 14 7 7.8901 5.9415 0.2912 15 14 7.4230 8.4072 1.4651 16 1 6.9146 8.4779 2.8586 17 1 8.9015 8.5455 1.4695 18 1 6.8259 9.5059 0.6640 19 7 1.8914 3.5585 0.0070 20 6 1.3002 2.3782 0.0011 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 4.0431 0.4006 0.0005 25 1 5.0980 2.6477 0.0011 26 1 3.2265 5.7323 0.0023 27 1 5.3255 5.8071 -2.0249 28 1 6.8518 5.1068 -1.4354 29 1 5.4930 4.0418 -1.8697 30 1 8.8245 6.1900 0.3695 31 1 0.2217 2.3217 0.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260495011.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:34 Heat of formation + Delta-G solvation = -17.592631 kcal Electronic energy + Delta-G solvation = -14683.630438 eV Core-core repulsion = 12157.806883 eV Total energy + Delta-G solvation = -2525.823556 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.43489 -39.24119 -37.19113 -34.48739 -33.29809 -31.28778 -29.20744 -27.93939 -27.26781 -24.39420 -23.71203 -21.91461 -19.34091 -18.73886 -17.80076 -17.69049 -16.70832 -16.60260 -15.73461 -15.49913 -14.97579 -14.70843 -14.22370 -14.10616 -13.72479 -13.56309 -13.06446 -12.87491 -12.65846 -12.61474 -12.32163 -12.20621 -12.08199 -11.10960 -10.77593 -10.56744 -10.34512 -10.29655 -8.21689 -8.08993 -6.33076 0.31341 0.60428 1.45078 1.45690 1.53639 2.33282 2.46084 2.69656 2.98717 3.12549 3.73653 3.87824 4.09682 4.36640 4.49411 4.54500 4.67231 4.78569 4.81966 4.93003 5.00302 5.07686 5.12930 5.41106 5.54596 5.66324 5.85602 6.07267 6.29581 6.45985 6.73190 7.03055 7.28951 7.44326 8.87028 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.066994 B = 0.005711 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.849953 B = 4901.279284 C = 5079.243244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C -0.004 4.004 4 C -0.062 4.062 5 C -0.217 4.217 6 C 0.365 3.635 7 N -0.711 5.711 8 C 0.281 3.719 9 H 0.019 0.981 10 C -0.139 4.139 11 C -0.550 4.550 12 H 0.060 0.940 13 C 0.023 3.977 14 N -0.911 5.911 15 Si 0.965 3.035 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.271 1.271 19 N -0.545 5.545 20 C 0.067 3.933 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.121 0.879 24 H 0.156 0.844 25 H 0.131 0.869 26 H 0.394 0.606 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.267 0.733 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.867 -8.986 -0.864 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C -0.053 4.053 4 C -0.088 4.088 5 C -0.243 4.243 6 C 0.129 3.871 7 N -0.341 5.341 8 C 0.177 3.823 9 H 0.036 0.964 10 C -0.199 4.199 11 C -0.588 4.588 12 H 0.078 0.922 13 C -0.178 4.178 14 N -0.549 5.549 15 Si 0.790 3.210 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.196 1.196 19 N -0.265 5.265 20 C -0.091 4.091 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.139 0.861 24 H 0.174 0.826 25 H 0.149 0.851 26 H 0.228 0.772 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.857 -8.457 -0.872 13.790 hybrid contribution 0.609 0.597 0.314 0.909 sum -10.248 -7.860 -0.558 12.927 Atomic orbital electron populations 1.23313 0.76816 1.05570 1.02031 1.86017 1.23029 1.25258 1.90056 1.19619 0.92866 0.86037 1.06778 1.20849 0.92298 0.97791 0.97850 1.21434 1.01018 0.91546 1.10285 1.18716 0.88479 0.87358 0.92596 1.45117 1.07488 1.03149 1.78339 1.18457 0.74590 0.96101 0.93139 0.96367 1.22019 1.02913 0.97429 0.97490 1.21466 0.92767 1.03050 1.41563 0.92229 1.25620 0.96045 1.00679 0.95441 1.69973 1.00729 1.37531 1.46650 0.85500 0.77060 0.79526 0.78867 1.19912 1.20625 1.19583 1.67093 1.09924 1.28421 1.21085 1.22908 1.00930 0.85952 0.99336 0.92020 0.91960 0.86062 0.82591 0.85104 0.77208 0.95301 0.91005 0.95566 0.92376 0.80132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.82 113.37 1.11 1.38 16 2 O -0.33 -8.37 10.51 -93.73 -0.99 -9.35 16 3 C 0.00 -0.11 6.71 22.57 0.15 0.04 16 4 C -0.06 -2.00 10.12 22.53 0.23 -1.77 16 5 C -0.22 -8.38 8.83 22.49 0.20 -8.18 16 6 C 0.37 15.15 7.64 132.99 1.02 16.16 16 7 N -0.71 -31.75 5.25 -327.99 -1.72 -33.47 16 8 C 0.28 13.97 2.24 44.25 0.10 14.07 16 9 H 0.02 1.00 6.45 -2.39 -0.02 0.98 16 10 C -0.14 -6.70 9.19 71.98 0.66 -6.04 16 11 C -0.55 -29.34 8.73 25.60 0.22 -29.11 16 12 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 13 C 0.02 1.21 5.31 84.66 0.45 1.66 16 14 N -0.91 -49.94 11.33 21.45 0.24 -49.70 16 15 Si 0.97 42.07 29.54 68.60 2.03 44.09 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 17 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 19 N -0.55 -20.74 10.39 -192.78 -2.00 -22.74 16 20 C 0.07 2.04 10.21 84.72 0.87 2.91 16 21 H 0.06 0.85 7.67 -2.39 -0.02 0.83 16 22 H 0.06 0.85 7.68 -2.38 -0.02 0.83 16 23 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.16 4.21 8.06 -2.90 -0.02 4.19 16 25 H 0.13 5.31 6.07 -2.91 -0.02 5.29 16 26 H 0.39 17.13 8.66 -92.71 -0.80 16.33 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 3.73 6.08 -2.39 -0.01 3.72 16 29 H 0.03 1.14 7.66 -2.39 -0.02 1.12 16 30 H 0.27 13.91 8.31 -92.70 -0.77 13.14 16 31 H 0.18 4.12 6.30 -2.91 -0.02 4.10 16 Total: -1.00 -59.88 264.08 2.91 -56.97 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.34 Total: 23.08 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 5.00 Total: -8.88 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -3.48 Total: -105.91 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.99 Total: -9.35 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -59.88 2.91 -56.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495011.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.382 kcal (2) G-P(sol) polarization free energy of solvation -59.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds