Wall clock time and date at job start Mon Mar 30 2020 03:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36420 * 126.56081 * 2 1 4 4 C 1.36219 * 107.19494 * 180.29145 * 3 2 1 5 5 C 1.50694 * 125.68816 * 179.75658 * 4 3 2 6 6 H 1.09006 * 110.33006 * 245.70306 * 5 4 3 7 7 C 1.54480 * 110.37519 * 123.45030 * 5 4 3 8 8 C 1.54504 * 104.06544 * 217.19018 * 7 5 4 9 9 C 1.54478 * 104.06244 * 359.97438 * 8 7 5 10 10 O 1.44428 * 110.37514 * 7.95011 * 5 4 3 11 11 N 1.32756 * 108.62124 * 359.73586 * 4 3 2 12 12 C 1.32989 * 109.22303 * 0.02562 * 11 4 3 13 13 C 1.40002 * 125.96039 * 180.02562 * 12 11 4 14 14 H 1.08001 * 119.99756 * 170.81910 * 13 12 11 15 15 C 1.40231 * 119.99942 * 350.82093 * 13 12 11 16 16 N 1.30685 * 119.99991 * 167.22570 * 15 13 12 17 17 Si 1.86805 * 120.00121 * 347.22853 * 15 13 12 18 18 H 1.48501 * 109.47175 * 90.00058 * 17 15 13 19 19 H 1.48498 * 109.47089 * 329.99673 * 17 15 13 20 20 H 1.48503 * 109.46987 * 209.99803 * 17 15 13 21 21 H 1.09001 * 109.46609 * 270.15478 * 1 2 3 22 22 H 1.08996 * 109.46799 * 30.14613 * 1 2 3 23 23 H 1.08994 * 109.47567 * 150.15198 * 1 2 3 24 24 H 1.07996 * 126.39960 * 0.02562 * 3 2 1 25 25 H 1.09000 * 110.50678 * 335.83523 * 7 5 4 26 26 H 1.08996 * 110.50962 * 98.54084 * 7 5 4 27 27 H 1.09001 * 110.51252 * 118.64189 * 8 7 5 28 28 H 1.09005 * 110.51259 * 241.35474 * 8 7 5 29 29 H 1.09008 * 110.37293 * 142.80943 * 9 8 7 30 30 H 1.09000 * 110.37364 * 265.14656 * 9 8 7 31 31 H 0.97002 * 119.99836 * 1.56297 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2776 1.0958 0.0000 4 6 3.5627 0.6441 -0.0066 5 6 4.7979 1.5073 -0.0143 6 1 5.3441 1.3785 -0.9488 7 6 5.7026 1.1622 1.1894 8 6 6.2766 2.5270 1.6311 9 6 5.6513 3.5351 0.6417 10 8 4.4430 2.8946 0.1736 11 7 3.5455 -0.6834 -0.0048 12 6 2.2842 -1.1049 0.0023 13 6 1.8636 -2.4402 0.0068 14 1 0.8215 -2.6776 0.1616 15 6 2.7956 -3.4695 -0.1899 16 7 2.4628 -4.7086 0.0588 17 14 4.5127 -3.0694 -0.8071 18 1 5.4083 -2.8168 0.3501 19 1 4.4604 -1.8593 -1.6662 20 1 5.0343 -4.2143 -1.5960 21 1 -0.3632 0.0028 1.0277 22 1 -0.3633 0.8887 -0.5161 23 1 -0.3634 -0.8913 -0.5114 24 1 1.9611 2.1283 0.0004 25 1 5.1160 0.7165 1.9927 26 1 6.5053 0.4911 0.8838 27 1 5.9737 2.7561 2.6528 28 1 7.3631 2.5307 1.5439 29 1 5.4128 4.4688 1.1513 30 1 6.3292 3.7191 -0.1917 31 1 1.5642 -4.9188 0.3577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260542691.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:14 Heat of formation + Delta-G solvation = -24.472584 kcal Electronic energy + Delta-G solvation = -15268.737378 eV Core-core repulsion = 12742.615485 eV Total energy + Delta-G solvation = -2526.121893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.23845 -40.01351 -35.58154 -34.68310 -32.90800 -31.73729 -29.70159 -27.76134 -26.11718 -23.94239 -22.34136 -21.36904 -20.77704 -19.53493 -17.77344 -17.23489 -16.27594 -16.20768 -15.95074 -15.56077 -15.23637 -14.68176 -14.59863 -13.86683 -13.77384 -13.45500 -13.25997 -12.85372 -12.60476 -12.30817 -12.16795 -11.98277 -11.66228 -11.49948 -11.08622 -10.75889 -10.18538 -9.81504 -9.35024 -9.17913 -6.55416 1.31438 1.58309 1.78713 2.04938 2.34476 2.42382 2.52264 2.91841 3.26689 3.74567 3.92277 4.04465 4.13006 4.30905 4.41379 4.44782 4.45124 4.59517 4.64610 4.82976 4.86003 4.99844 5.05979 5.17462 5.24948 5.31159 5.52145 5.81719 5.98279 6.10210 6.40538 6.71538 7.02453 7.73916 8.11901 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.029891 B = 0.010572 C = 0.008257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.509665 B = 2647.959946 C = 3390.062164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.509 5.509 3 C -0.113 4.113 4 C -0.008 4.008 5 C 0.168 3.832 6 H 0.072 0.928 7 C -0.138 4.138 8 C -0.145 4.145 9 C 0.040 3.960 10 O -0.388 6.388 11 N -0.598 5.598 12 C 0.345 3.655 13 C -0.534 4.534 14 H 0.067 0.933 15 C 0.035 3.965 16 N -0.847 5.847 17 Si 1.155 2.845 18 H -0.285 1.285 19 H -0.275 1.275 20 H -0.313 1.313 21 H 0.066 0.934 22 H 0.099 0.901 23 H 0.071 0.929 24 H 0.174 0.826 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.000 13.649 0.970 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.196 5.196 3 C -0.244 4.244 4 C -0.137 4.137 5 C 0.110 3.890 6 H 0.089 0.911 7 C -0.176 4.176 8 C -0.182 4.182 9 C -0.037 4.037 10 O -0.307 6.307 11 N -0.326 5.326 12 C 0.099 3.901 13 C -0.574 4.574 14 H 0.086 0.914 15 C -0.181 4.181 16 N -0.474 5.474 17 Si 0.984 3.016 18 H -0.212 1.212 19 H -0.201 1.201 20 H -0.244 1.244 21 H 0.085 0.915 22 H 0.117 0.883 23 H 0.090 0.910 24 H 0.191 0.809 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.093 0.907 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.658 12.647 0.586 13.867 hybrid contribution -2.673 0.603 0.635 2.813 sum 2.984 13.250 1.221 13.637 Atomic orbital electron populations 1.21792 0.76408 1.04061 1.02718 1.45454 1.07450 1.06033 1.60711 1.22173 0.90364 0.92030 1.19805 1.20405 0.93806 0.90760 1.08703 1.20723 0.90131 0.80185 0.97991 0.91077 1.22800 0.98678 0.98874 0.97277 1.22942 1.02057 0.92806 1.00405 1.23675 0.86137 0.96857 0.96991 1.89073 1.34262 1.19813 1.87512 1.69523 1.18630 1.10598 1.33841 1.20261 0.84364 0.88807 0.96646 1.19294 0.97188 0.88651 1.52245 0.91448 1.27877 1.08425 0.91255 0.90511 1.70650 1.22373 1.20576 1.33780 0.82128 0.69857 0.72330 0.77332 1.21208 1.20137 1.24394 0.91535 0.88259 0.91040 0.80918 0.93231 0.90322 0.90311 0.88100 0.87109 0.90725 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.23 10.94 127.77 1.40 4.63 16 2 N -0.51 -23.59 3.21 -544.22 -1.75 -25.34 16 3 C -0.11 -5.01 10.96 83.51 0.91 -4.09 16 4 C -0.01 -0.36 6.20 41.95 0.26 -0.10 16 5 C 0.17 6.35 3.85 30.35 0.12 6.47 16 6 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 7 C -0.14 -4.57 6.62 31.61 0.21 -4.36 16 8 C -0.14 -3.30 7.09 31.61 0.22 -3.07 16 9 C 0.04 0.90 7.63 72.48 0.55 1.45 16 10 O -0.39 -12.92 10.72 -148.98 -1.60 -14.52 16 11 N -0.60 -32.00 6.57 -182.22 -1.20 -33.20 16 12 C 0.34 18.74 7.10 133.59 0.95 19.68 16 13 C -0.53 -30.39 9.34 23.18 0.22 -30.17 16 14 H 0.07 3.82 7.53 -2.91 -0.02 3.80 16 15 C 0.04 2.03 5.52 85.35 0.47 2.50 16 16 N -0.85 -48.61 13.65 21.88 0.30 -48.31 16 17 Si 1.15 58.81 26.32 68.60 1.81 60.62 16 18 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 19 H -0.27 -14.29 6.39 99.48 0.64 -13.65 16 20 H -0.31 -15.22 7.11 99.48 0.71 -14.52 16 21 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 23 H 0.07 2.55 7.50 -2.39 -0.02 2.53 16 24 H 0.17 6.62 7.91 -2.91 -0.02 6.60 16 25 H 0.05 1.90 7.86 -2.39 -0.02 1.88 16 26 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.28 15.41 8.72 -92.71 -0.81 14.60 16 Total: -1.00 -67.51 260.99 3.88 -63.63 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.00 Total: 4.18 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.31 Total: -7.06 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -2.65 Total: -106.85 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -1.60 Total: -14.52 kcal Atomic # 14 Polarization: 58.81 SS G_CDS: 1.81 Total: 60.62 kcal Total: -67.51 3.88 -63.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260542691.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.158 kcal (2) G-P(sol) polarization free energy of solvation -67.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds