Wall clock time and date at job start Mon Mar 30 2020 02:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47025 * 2 1 4 4 F 1.39900 * 109.47118 * 239.99359 * 2 1 3 5 5 C 1.50697 * 109.46854 * 119.99883 * 2 1 3 6 6 C 1.38261 * 120.00205 * 64.99461 * 5 2 1 7 7 C 1.38211 * 120.00268 * 179.97438 * 6 5 2 8 8 C 1.38256 * 119.99788 * 0.02650 * 7 6 5 9 9 C 1.38211 * 120.00234 * 359.95607 * 8 7 6 10 10 C 1.50703 * 120.00060 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47152 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.46912 * 300.00088 * 10 9 8 13 13 C 1.50699 * 109.47227 * 59.99977 * 10 9 8 14 14 H 1.07999 * 120.00019 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00129 * 180.02562 * 13 10 9 16 16 N 1.31519 * 119.99723 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99900 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47112 * 60.00201 * 17 15 13 19 19 H 1.48503 * 109.47000 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46939 * 299.99464 * 17 15 13 21 21 C 1.38219 * 120.00352 * 245.21051 * 5 2 1 22 22 H 1.09001 * 109.46932 * 300.00785 * 1 2 3 23 23 H 1.09003 * 109.46581 * 59.99877 * 1 2 3 24 24 H 1.08993 * 109.47664 * 179.97438 * 1 2 3 25 25 H 1.07998 * 119.99871 * 0.02562 * 6 5 2 26 26 H 1.07995 * 120.00293 * 180.02562 * 7 6 5 27 27 H 1.08009 * 119.99925 * 179.97438 * 8 7 6 28 28 H 1.09001 * 109.47194 * 299.99742 * 12 10 9 29 29 H 1.08992 * 109.47399 * 59.99914 * 12 10 9 30 30 H 1.09004 * 109.46724 * 180.02562 * 12 10 9 31 31 H 0.97003 * 119.99231 * 179.97438 * 16 15 13 32 32 H 1.08001 * 119.99221 * 0.03976 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0323 -0.7104 1.2305 6 6 1.7855 -2.0604 1.3985 7 6 2.2466 -2.7120 2.5268 8 6 2.9541 -2.0138 3.4877 9 6 3.2012 -0.6643 3.3196 10 6 3.9729 0.0966 4.3667 11 1 4.0676 1.1390 4.0623 12 6 3.2313 0.0202 5.7028 13 6 5.3447 -0.5085 4.5183 14 1 5.6292 -1.3593 3.9170 15 6 6.2364 0.0234 5.4256 16 7 5.8898 1.0591 6.1583 17 14 7.9366 -0.7272 5.6140 18 1 8.6568 -0.6531 4.3176 19 1 8.6971 0.0227 6.6458 20 1 7.8076 -2.1474 6.0283 21 6 2.7358 -0.0115 2.1933 22 1 -0.3633 0.5140 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.2331 -2.6059 0.6477 26 1 2.0542 -3.7666 2.6578 27 1 3.3141 -2.5229 4.3696 28 1 2.2391 0.4579 5.5931 29 1 3.1370 -1.0222 6.0069 30 1 3.7893 0.5710 6.4600 31 1 6.5171 1.4330 6.7968 32 1 2.9250 1.0440 2.0640 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260546708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:58 Heat of formation + Delta-G solvation = -61.555203 kcal Electronic energy + Delta-G solvation = -14748.691845 eV Core-core repulsion = 12201.041967 eV Total energy + Delta-G solvation = -2547.649878 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.62387 -40.29736 -36.47255 -34.20942 -33.04590 -30.78956 -29.48476 -27.22211 -25.08842 -23.76936 -22.77744 -20.66598 -18.33084 -17.68365 -17.27497 -16.64171 -16.38371 -15.98923 -15.60434 -15.01140 -14.59787 -14.16519 -13.88822 -13.59413 -13.32951 -13.12837 -12.90188 -12.80984 -12.71940 -12.54270 -12.19802 -12.18196 -11.94026 -11.54293 -11.16314 -11.00165 -10.48203 -9.68754 -9.37022 -8.11428 -6.25472 0.47384 0.63223 1.41222 1.41912 1.49905 2.41586 2.94651 3.16442 3.50298 3.75926 3.93093 4.19201 4.24476 4.29332 4.39378 4.66347 4.70904 4.80470 4.86064 4.95689 5.11435 5.13904 5.20990 5.24675 5.32588 5.51794 5.62392 5.66751 5.69866 6.02868 6.08601 6.22715 6.35950 6.82793 7.42428 8.92890 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039350 B = 0.006795 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.388171 B = 4119.629381 C = 4175.336152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.131 3.869 3 H 0.098 0.902 4 F -0.223 7.223 5 C -0.130 4.130 6 C -0.121 4.121 7 C -0.120 4.120 8 C -0.120 4.120 9 C -0.059 4.059 10 C 0.070 3.930 11 H 0.005 0.995 12 C -0.121 4.121 13 C -0.524 4.524 14 H 0.049 0.951 15 C 0.015 3.985 16 N -0.916 5.916 17 Si 0.953 3.047 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.270 1.270 21 C -0.127 4.127 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.140 0.860 26 H 0.146 0.854 27 H 0.112 0.888 28 H 0.025 0.975 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.262 0.738 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.924 -3.649 -9.021 13.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.095 3.905 3 H 0.116 0.884 4 F -0.204 7.204 5 C -0.131 4.131 6 C -0.139 4.139 7 C -0.138 4.138 8 C -0.138 4.138 9 C -0.059 4.059 10 C 0.052 3.948 11 H 0.023 0.977 12 C -0.179 4.179 13 C -0.562 4.562 14 H 0.067 0.933 15 C -0.184 4.184 16 N -0.556 5.556 17 Si 0.779 3.221 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.195 1.195 21 C -0.145 4.145 22 H 0.100 0.900 23 H 0.103 0.897 24 H 0.090 0.910 25 H 0.158 0.842 26 H 0.163 0.837 27 H 0.131 0.869 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.848 -3.540 -8.912 13.745 hybrid contribution 1.267 -0.107 0.457 1.351 sum -8.581 -3.646 -8.455 12.586 Atomic orbital electron populations 1.22331 0.91405 1.04261 1.04392 1.20511 0.96453 0.95245 0.78282 0.88426 1.92796 1.90755 1.83852 1.52947 1.20312 1.00567 0.95460 0.96714 1.21043 1.00995 0.93721 0.98107 1.21363 0.97924 1.00683 0.93811 1.21146 0.98842 0.94024 0.99762 1.20437 0.94843 0.94979 0.95643 1.17753 0.92684 0.93627 0.90727 0.97714 1.21621 0.96833 0.99464 0.99955 1.21359 0.98586 1.15056 1.21216 0.93251 1.25705 1.01946 0.95357 0.95351 1.70002 1.36680 1.24089 1.24785 0.85684 0.79899 0.78753 0.77788 1.20031 1.20678 1.19502 1.21037 0.99087 0.99993 0.94382 0.90001 0.89686 0.90993 0.84193 0.83659 0.86943 0.95573 0.94915 0.92189 0.92838 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.51 71.98 0.68 -2.45 16 2 C 0.13 3.32 4.18 29.85 0.12 3.45 16 3 H 0.10 2.26 7.89 -2.39 -0.02 2.24 16 4 F -0.22 -6.40 16.93 44.97 0.76 -5.64 16 5 C -0.13 -4.12 5.04 -19.86 -0.10 -4.22 16 6 C -0.12 -3.59 9.15 22.27 0.20 -3.39 16 7 C -0.12 -3.79 10.05 22.27 0.22 -3.57 16 8 C -0.12 -4.69 8.71 22.27 0.19 -4.50 16 9 C -0.06 -2.56 4.74 -19.87 -0.09 -2.66 16 10 C 0.07 3.60 2.48 -12.29 -0.03 3.57 16 11 H 0.00 0.26 7.88 -2.39 -0.02 0.24 16 12 C -0.12 -5.90 8.78 71.98 0.63 -5.27 16 13 C -0.52 -29.10 8.24 25.60 0.21 -28.89 16 14 H 0.05 2.74 7.60 -2.91 -0.02 2.72 16 15 C 0.02 0.84 5.30 84.65 0.45 1.29 16 16 N -0.92 -52.74 11.32 21.45 0.24 -52.50 16 17 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 C -0.13 -4.82 9.30 22.27 0.21 -4.61 16 22 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 1.30 7.70 -2.39 -0.02 1.28 16 25 H 0.14 3.36 7.88 -2.91 -0.02 3.34 16 26 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 27 H 0.11 4.53 7.58 -2.91 -0.02 4.51 16 28 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.03 1.51 7.39 -2.39 -0.02 1.49 16 30 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.12 4.30 7.84 -2.91 -0.02 4.27 16 Total: -1.00 -61.03 273.20 6.83 -54.20 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.09 Total: 9.37 kcal Atomic # 6 Polarization: -53.94 SS G_CDS: 2.70 Total: -51.24 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.24 Total: -52.50 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.76 Total: -5.64 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -61.03 6.83 -54.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260546708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.356 kcal (2) G-P(sol) polarization free energy of solvation -61.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds