Wall clock time and date at job start Mon Mar 30 2020 03:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00114 * 2 1 4 4 C 1.50703 * 109.47422 * 270.00304 * 3 2 1 5 5 H 1.07996 * 120.00007 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99986 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99709 * 359.97438 * 6 4 3 8 8 Si 1.86791 * 120.00013 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47207 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47324 * 119.99954 * 8 6 4 11 11 H 1.48499 * 109.47135 * 239.99766 * 8 6 4 12 12 C 1.38164 * 119.99630 * 180.02562 * 2 1 3 13 13 N 1.30953 * 125.70990 * 359.97438 * 12 2 1 14 14 C 1.35057 * 108.63511 * 180.02562 * 13 12 2 15 15 C 1.33847 * 107.70895 * 0.02562 * 14 13 12 16 16 O 1.34136 * 125.70936 * 180.02562 * 12 2 1 17 17 C 1.51267 * 110.54324 * 180.02562 * 15 14 13 18 18 C 1.54483 * 104.92767 * 343.18729 * 17 15 14 19 19 C 1.51406 * 141.83859 * 179.97438 * 14 13 12 20 20 H 1.08996 * 109.47004 * 269.99741 * 1 2 3 21 21 H 1.09010 * 109.46701 * 29.99389 * 1 2 3 22 22 H 1.09005 * 109.47349 * 149.99137 * 1 2 3 23 23 H 1.08996 * 109.47270 * 30.00439 * 3 2 1 24 24 H 1.09008 * 109.46991 * 150.00345 * 3 2 1 25 25 H 0.97007 * 120.00042 * 180.02562 * 7 6 4 26 26 H 1.09006 * 110.34768 * 224.32874 * 17 15 14 27 27 H 1.08996 * 110.43751 * 102.09957 * 17 15 14 28 28 H 1.09002 * 110.96129 * 143.58505 * 18 17 15 29 29 H 1.08999 * 110.96199 * 267.29087 * 18 17 15 30 30 H 1.09001 * 110.33460 * 77.94004 * 19 14 13 31 31 H 1.09003 * 110.37822 * 315.66107 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1270 2.8775 -1.6727 7 7 3.5543 3.6175 -0.6730 8 14 3.4376 3.4172 -3.4337 9 1 2.8596 2.4173 -4.3672 10 1 2.8007 4.7383 -3.6663 11 1 4.9001 3.5248 -3.6678 12 6 2.1558 -1.1966 -0.0005 13 7 1.6170 -2.3902 -0.0006 14 6 2.6059 -3.3100 -0.0006 15 6 3.7724 -2.6537 0.0000 16 8 3.4905 -1.3301 -0.0001 17 6 4.9296 -3.6280 -0.0006 18 6 4.3137 -4.9777 0.4301 19 6 2.8404 -4.8058 -0.0002 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8901 -0.5138 22 1 -0.3634 -0.8899 -0.5140 23 1 1.6085 2.0283 0.5139 24 1 3.1500 1.1382 0.5138 25 1 4.0312 4.4435 -0.8501 26 1 5.6903 -3.3133 0.7139 27 1 5.3587 -3.7086 -0.9993 28 1 4.7813 -5.8068 -0.1010 29 1 4.3907 -5.1150 1.5086 30 1 2.6878 -5.2134 -0.9996 31 1 2.1774 -5.2938 0.7142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260565863.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:18 Heat of formation + Delta-G solvation = 46.097634 kcal Electronic energy + Delta-G solvation = -14991.790773 eV Core-core repulsion = 12468.729035 eV Total energy + Delta-G solvation = -2523.061739 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.46177 -37.09818 -35.87140 -33.36631 -32.48510 -28.04336 -27.86748 -27.34225 -25.12579 -22.83983 -20.98488 -20.38125 -19.48850 -16.72743 -16.57532 -16.01086 -15.28435 -14.87961 -14.74103 -13.97887 -13.40585 -13.15822 -12.77217 -12.33084 -12.19945 -11.67119 -11.45548 -11.30831 -11.15351 -11.11035 -10.94071 -10.71428 -10.38635 -10.18089 -9.76715 -9.47740 -8.71528 -8.56013 -6.74080 -6.12276 -4.22771 2.36729 2.71639 3.23677 3.31312 3.36601 3.53695 3.77179 4.35184 4.65690 4.94111 5.00262 5.17064 5.25441 5.65778 5.74535 5.75128 5.81208 5.93914 6.00578 6.07712 6.16936 6.29459 6.35151 6.63018 6.80145 7.08242 7.20341 7.62577 7.82764 8.06890 8.20512 8.70538 8.89275 9.44062 10.91449 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.034846 B = 0.007573 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.342120 B = 3696.221414 C = 4110.228386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.563 5.563 3 C 0.252 3.748 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.490 3.510 13 N -0.558 5.558 14 C -0.005 4.005 15 C -0.144 4.144 16 O -0.199 6.199 17 C -0.010 4.010 18 C -0.114 4.114 19 C -0.033 4.033 20 H 0.043 0.957 21 H 0.076 0.924 22 H 0.067 0.933 23 H 0.045 0.955 24 H 0.036 0.964 25 H 0.265 0.735 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.001 -12.908 1.921 13.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.289 5.289 3 C 0.132 3.868 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.193 3.807 13 N -0.299 5.299 14 C -0.124 4.124 15 C -0.199 4.199 16 O -0.086 6.086 17 C -0.047 4.047 18 C -0.152 4.152 19 C -0.071 4.071 20 H 0.061 0.939 21 H 0.094 0.906 22 H 0.085 0.915 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.565 -12.657 1.971 12.822 hybrid contribution 0.934 0.889 -1.006 1.635 sum 0.369 -11.768 0.965 11.814 Atomic orbital electron populations 1.21475 0.77370 1.02840 1.00601 1.46044 1.04994 1.00626 1.77273 1.19439 0.92021 0.77585 0.97708 1.21580 1.36908 1.06799 0.92350 0.92050 1.24953 0.95109 0.96154 0.97720 1.69939 1.38075 1.14330 1.30820 0.86405 0.78088 0.78503 0.84279 1.19686 1.20715 1.20787 1.21609 0.76959 0.88465 0.93641 1.70213 1.31150 0.95998 1.32534 1.21941 0.89329 0.96859 1.04278 1.22941 1.00098 0.80469 1.16362 1.84261 1.24888 1.25594 1.73897 1.20381 0.92745 0.89192 1.02421 1.22420 0.94726 0.96140 1.01889 1.20376 0.96276 0.88251 1.02225 0.93871 0.90557 0.91466 0.93751 0.94642 0.92547 0.90672 0.90067 0.89560 0.90422 0.90133 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.23 10.57 59.85 0.63 2.87 16 2 N -0.56 -13.11 2.95 -185.35 -0.55 -13.66 16 3 C 0.25 6.58 5.32 -5.20 -0.03 6.56 16 4 C -0.54 -15.17 9.39 -34.44 -0.32 -15.49 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.58 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.49 11.64 8.42 -87.07 -0.73 10.91 16 13 N -0.56 -12.36 10.63 -10.46 -0.11 -12.47 16 14 C 0.00 -0.09 7.98 -82.37 -0.66 -0.74 16 15 C -0.14 -2.82 8.24 -35.57 -0.29 -3.12 16 16 O -0.20 -4.80 10.23 3.23 0.03 -4.76 16 17 C -0.01 -0.13 6.79 -26.83 -0.18 -0.31 16 18 C -0.11 -1.17 7.14 -25.20 -0.18 -1.35 16 19 C -0.03 -0.43 6.80 -26.78 -0.18 -0.62 16 20 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.08 1.36 8.07 -51.92 -0.42 0.94 16 22 H 0.07 1.22 7.64 -51.93 -0.40 0.82 16 23 H 0.04 1.16 8.07 -51.93 -0.42 0.74 16 24 H 0.04 1.00 7.71 -51.92 -0.40 0.60 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 268.67 15.07 4.05 4.05 Total: -1.00 -32.48 268.67 -7.04 -39.52 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -4.14 Total: -4.40 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.04 Total: 0.39 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.08 Total: -51.37 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: 0.03 Total: -4.76 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.48 -7.04 -39.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260565863.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.617 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds