Wall clock time and date at job start Mon Mar 30 2020 03:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00114 * 2 1 4 4 C 1.50703 * 109.47422 * 270.00304 * 3 2 1 5 5 H 1.07996 * 120.00007 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99986 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99709 * 359.97438 * 6 4 3 8 8 Si 1.86791 * 120.00013 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47207 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47324 * 119.99954 * 8 6 4 11 11 H 1.48499 * 109.47135 * 239.99766 * 8 6 4 12 12 C 1.38164 * 119.99630 * 180.02562 * 2 1 3 13 13 N 1.30953 * 125.70990 * 359.97438 * 12 2 1 14 14 C 1.35057 * 108.63511 * 180.02562 * 13 12 2 15 15 C 1.33847 * 107.70895 * 0.02562 * 14 13 12 16 16 O 1.34136 * 125.70936 * 180.02562 * 12 2 1 17 17 C 1.51267 * 110.54324 * 180.02562 * 15 14 13 18 18 C 1.54483 * 104.92767 * 343.18729 * 17 15 14 19 19 C 1.51406 * 141.83859 * 179.97438 * 14 13 12 20 20 H 1.08996 * 109.47004 * 269.99741 * 1 2 3 21 21 H 1.09010 * 109.46701 * 29.99389 * 1 2 3 22 22 H 1.09005 * 109.47349 * 149.99137 * 1 2 3 23 23 H 1.08996 * 109.47270 * 30.00439 * 3 2 1 24 24 H 1.09008 * 109.46991 * 150.00345 * 3 2 1 25 25 H 0.97007 * 120.00042 * 180.02562 * 7 6 4 26 26 H 1.09006 * 110.34768 * 224.32874 * 17 15 14 27 27 H 1.08996 * 110.43751 * 102.09957 * 17 15 14 28 28 H 1.09002 * 110.96129 * 143.58505 * 18 17 15 29 29 H 1.08999 * 110.96199 * 267.29087 * 18 17 15 30 30 H 1.09001 * 110.33460 * 77.94004 * 19 14 13 31 31 H 1.09003 * 110.37822 * 315.66107 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1270 2.8775 -1.6727 7 7 3.5543 3.6175 -0.6730 8 14 3.4376 3.4172 -3.4337 9 1 2.8596 2.4173 -4.3672 10 1 2.8007 4.7383 -3.6663 11 1 4.9001 3.5248 -3.6678 12 6 2.1558 -1.1966 -0.0005 13 7 1.6170 -2.3902 -0.0006 14 6 2.6059 -3.3100 -0.0006 15 6 3.7724 -2.6537 0.0000 16 8 3.4905 -1.3301 -0.0001 17 6 4.9296 -3.6280 -0.0006 18 6 4.3137 -4.9777 0.4301 19 6 2.8404 -4.8058 -0.0002 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8901 -0.5138 22 1 -0.3634 -0.8899 -0.5140 23 1 1.6085 2.0283 0.5139 24 1 3.1500 1.1382 0.5138 25 1 4.0312 4.4435 -0.8501 26 1 5.6903 -3.3133 0.7139 27 1 5.3587 -3.7086 -0.9993 28 1 4.7813 -5.8068 -0.1010 29 1 4.3907 -5.1150 1.5086 30 1 2.6878 -5.2134 -0.9996 31 1 2.1774 -5.2938 0.7142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260565863.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:18 Heat of formation + Delta-G solvation = 23.877400 kcal Electronic energy + Delta-G solvation = -14992.754315 eV Core-core repulsion = 12468.729035 eV Total energy + Delta-G solvation = -2524.025280 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.07043 -38.48394 -37.49547 -35.17814 -34.40260 -29.95867 -29.18547 -28.62578 -26.80762 -24.74078 -22.44837 -21.68535 -21.12485 -18.81796 -18.20065 -17.71428 -16.77651 -16.70827 -16.00859 -15.59790 -15.06331 -14.70370 -14.10637 -13.78614 -13.62925 -13.33505 -13.20982 -12.84671 -12.79422 -12.60397 -12.22777 -12.18952 -12.08259 -11.98545 -11.62927 -11.12218 -10.72757 -10.34127 -8.52134 -8.14553 -6.47521 0.78898 1.16792 1.34434 1.35456 1.48592 1.90152 2.21111 2.35851 2.98441 3.38089 3.90114 4.07144 4.18351 4.26662 4.49512 4.60222 4.68870 4.73358 4.80988 4.83154 4.87980 5.00656 5.03052 5.21066 5.27839 5.36601 5.43367 5.54565 5.89314 5.96776 6.44682 6.61371 7.09504 7.25921 8.76039 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.034846 B = 0.007573 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.342120 B = 3696.221414 C = 4110.228386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.575 5.575 3 C 0.270 3.730 4 C -0.555 4.555 5 H 0.049 0.951 6 C 0.016 3.984 7 N -0.923 5.923 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.266 1.266 11 H -0.276 1.276 12 C 0.459 3.541 13 N -0.564 5.564 14 C -0.026 4.026 15 C -0.165 4.165 16 O -0.236 6.236 17 C -0.013 4.013 18 C -0.096 4.096 19 C -0.031 4.031 20 H 0.063 0.937 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.039 0.961 24 H 0.002 0.998 25 H 0.271 0.729 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.129 0.871 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.539 -14.791 1.143 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.302 5.302 3 C 0.149 3.851 4 C -0.594 4.594 5 H 0.068 0.932 6 C -0.184 4.184 7 N -0.562 5.562 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.191 1.191 11 H -0.202 1.202 12 C 0.162 3.838 13 N -0.306 5.306 14 C -0.145 4.145 15 C -0.219 4.219 16 O -0.125 6.125 17 C -0.050 4.050 18 C -0.133 4.133 19 C -0.069 4.069 20 H 0.082 0.918 21 H 0.100 0.900 22 H 0.090 0.910 23 H 0.057 0.943 24 H 0.021 0.979 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.147 0.853 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.037 -14.571 1.204 14.620 hybrid contribution 0.785 1.390 -0.723 1.752 sum 0.748 -13.181 0.481 13.211 Atomic orbital electron populations 1.21635 0.75099 1.03300 1.02063 1.45993 1.06239 0.99817 1.78192 1.18974 0.90818 0.78893 0.96441 1.21748 1.37618 1.07194 0.92819 0.93233 1.25811 0.94501 0.95986 1.02116 1.70033 1.38374 1.14783 1.32975 0.85353 0.78140 0.78427 0.78825 1.19672 1.19134 1.20156 1.21960 0.77164 0.89048 0.95634 1.70184 1.32281 0.96102 1.31993 1.23073 0.88263 0.99696 1.03467 1.24410 1.03234 0.79102 1.15147 1.84224 1.25455 1.28550 1.74255 1.20818 0.91368 0.88979 1.03875 1.22518 0.92288 0.95242 1.03298 1.20689 0.98544 0.83812 1.03861 0.91850 0.90015 0.90966 0.94267 0.97942 0.91996 0.89598 0.88518 0.85320 0.89138 0.88422 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.55 10.57 127.77 1.35 5.91 16 2 N -0.58 -27.82 2.95 -850.83 -2.51 -30.33 16 3 C 0.27 14.76 5.32 85.64 0.46 15.22 16 4 C -0.56 -32.25 9.39 25.60 0.24 -32.01 16 5 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 6 C 0.02 0.91 5.46 84.66 0.46 1.37 16 7 N -0.92 -54.49 13.29 21.45 0.28 -54.21 16 8 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.46 22.54 8.42 179.11 1.51 24.05 16 13 N -0.56 -25.25 10.63 -301.38 -3.20 -28.45 16 14 C -0.03 -0.98 7.98 41.29 0.33 -0.65 16 15 C -0.17 -6.48 8.24 24.87 0.20 -6.27 16 16 O -0.24 -11.87 10.23 -11.34 -0.12 -11.99 16 17 C -0.01 -0.32 6.79 30.53 0.21 -0.11 16 18 C -0.10 -1.54 7.14 31.59 0.23 -1.32 16 19 C -0.03 -0.71 6.80 30.56 0.21 -0.51 16 20 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 21 H 0.08 2.96 8.07 -2.38 -0.02 2.94 16 22 H 0.07 2.64 7.64 -2.38 -0.02 2.62 16 23 H 0.04 2.15 8.07 -2.39 -0.02 2.13 16 24 H 0.00 0.15 7.71 -2.38 -0.02 0.13 16 25 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 26 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.10 2.06 8.14 -2.39 -0.02 2.05 16 28 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -72.88 268.67 2.79 -70.09 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: 1.12 Total: 2.70 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 5.19 Total: 5.69 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -5.43 Total: -112.99 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.12 Total: -11.99 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -72.88 2.79 -70.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260565863.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.965 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds