Wall clock time and date at job start Mon Mar 30 2020 02:56:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.08999 * 109.47465 * 2 1
4 4 F 1.39902 * 109.46995 * 240.00474 * 2 1 3
5 5 C 1.52994 * 109.47505 * 120.00594 * 2 1 3
6 6 C 1.50696 * 109.47379 * 185.00113 * 5 2 1
7 7 C 1.38262 * 120.00098 * 269.97327 * 6 5 2
8 8 C 1.38204 * 120.00535 * 179.97438 * 7 6 5
9 9 C 1.38254 * 119.99816 * 0.13864 * 8 7 6
10 10 C 1.38220 * 120.00044 * 359.83750 * 9 8 7
11 11 C 1.50702 * 120.00039 * 180.36613 * 10 9 8
12 12 C 1.50690 * 109.47286 * 269.72879 * 11 10 9
13 13 H 1.07999 * 120.00161 * 0.02562 * 12 11 10
14 14 C 1.37877 * 120.00164 * 179.97438 * 12 11 10
15 15 N 1.31515 * 119.99696 * 0.02562 * 14 12 11
16 16 Si 1.86796 * 120.00395 * 179.97438 * 14 12 11
17 17 H 1.48504 * 109.47291 * 0.02562 * 16 14 12
18 18 H 1.48504 * 109.47120 * 119.99918 * 16 14 12
19 19 H 1.48497 * 109.47257 * 240.00250 * 16 14 12
20 20 C 1.38207 * 120.00352 * 89.99758 * 6 5 2
21 21 H 1.09001 * 109.46938 * 299.99738 * 1 2 3
22 22 H 1.08996 * 109.47548 * 59.99651 * 1 2 3
23 23 H 1.09007 * 109.47281 * 179.97438 * 1 2 3
24 24 H 1.09003 * 109.47460 * 64.99585 * 5 2 1
25 25 H 1.09001 * 109.47147 * 304.99826 * 5 2 1
26 26 H 1.08013 * 119.99532 * 0.02562 * 7 6 5
27 27 H 1.07997 * 120.00478 * 180.02562 * 8 7 6
28 28 H 1.08002 * 120.00345 * 179.97438 * 9 8 7
29 29 H 1.09003 * 109.46871 * 29.72824 * 11 10 9
30 30 H 1.09001 * 109.47017 * 149.72162 * 11 10 9
31 31 H 0.97005 * 120.00116 * 179.97438 * 15 14 12
32 32 H 1.08000 * 120.00334 * 359.97438 * 20 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 9 1.9962 -0.6594 -1.1424
5 6 2.0400 -0.7213 1.2491
6 6 3.5419 -0.6150 1.3126
7 6 4.3293 -1.5820 0.7155
8 6 5.7066 -1.4843 0.7732
9 6 6.2972 -0.4209 1.4305
10 6 5.5101 0.5461 2.0269
11 6 6.1539 1.7095 2.7363
12 6 6.3687 1.3577 4.1857
13 1 6.0694 0.3884 4.5562
14 6 6.9483 2.2728 5.0387
15 7 7.3131 3.4530 4.5874
16 14 7.2139 1.8370 6.8356
17 1 6.7202 0.4595 7.0891
18 1 8.6627 1.9094 7.1535
19 1 6.4705 2.7952 7.6925
20 6 4.1323 0.4490 1.9680
21 1 -0.3633 0.5138 0.8900
22 1 -0.3634 0.5139 -0.8899
23 1 -0.3634 -1.0277 -0.0005
24 1 1.7516 -1.7716 1.2054
25 1 1.6054 -0.2619 2.1369
26 1 3.8678 -2.4135 0.2032
27 1 6.3217 -2.2394 0.3065
28 1 7.3736 -0.3447 1.4760
29 1 7.1137 1.9330 2.2705
30 1 5.5043 2.5821 2.6665
31 1 7.7206 4.0970 5.1876
32 1 3.5173 1.2044 2.4344
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260585747.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:18
Heat of formation + Delta-G solvation = -56.404367 kcal
Electronic energy + Delta-G solvation = -14457.498430 eV
Core-core repulsion = 11910.071909 eV
Total energy + Delta-G solvation = -2547.426521 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.112 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-47.47456 -38.75646 -34.46011 -33.20267 -31.20211 -30.53472 -27.15735 -26.25386
-23.29004 -22.03078 -21.06039 -19.66350 -16.46556 -16.32308 -15.87893 -15.18971
-15.09798 -14.58196 -14.45731 -13.82114 -12.90642 -12.68267 -12.45789 -12.43607
-12.23903 -11.92654 -11.75659 -11.24817 -11.06630 -11.01994 -10.71200 -10.64421
-10.45350 -10.15861 -9.50964 -9.42049 -8.43856 -8.12874 -7.75816 -6.05389
-4.09131 1.99793 2.16730 3.28308 3.35976 3.41193 4.33197 4.47707
4.64292 4.79431 4.82630 5.04032 5.28721 5.30490 5.40682 5.58546
5.62479 5.67567 5.86576 5.96537 5.98723 6.10713 6.19224 6.40227
6.65382 6.81776 7.13305 7.19594 7.23386 7.50585 7.76469 7.85726
7.90864 8.31597 8.96570 9.54814 11.04591
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.037121 B = 0.006188 C = 0.005797
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 754.118346 B = 4523.717356 C = 4828.762160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.092 3.908
3 H 0.084 0.916
4 F -0.214 7.214
5 C -0.101 4.101
6 C -0.098 4.098
7 C -0.135 4.135
8 C -0.123 4.123
9 C -0.125 4.125
10 C -0.034 4.034
11 C 0.047 3.953
12 C -0.510 4.510
13 H 0.057 0.943
14 C 0.058 3.942
15 N -0.895 5.895
16 Si 0.895 3.105
17 H -0.272 1.272
18 H -0.283 1.283
19 H -0.283 1.283
20 C -0.119 4.119
21 H 0.075 0.925
22 H 0.065 0.935
23 H 0.065 0.935
24 H 0.077 0.923
25 H 0.087 0.913
26 H 0.109 0.891
27 H 0.111 0.889
28 H 0.117 0.883
29 H 0.028 0.972
30 H 0.028 0.972
31 H 0.261 0.739
32 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.417 -7.079 -7.468 14.642
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.056 3.944
3 H 0.102 0.898
4 F -0.195 7.195
5 C -0.139 4.139
6 C -0.098 4.098
7 C -0.153 4.153
8 C -0.141 4.141
9 C -0.143 4.143
10 C -0.034 4.034
11 C 0.010 3.990
12 C -0.549 4.549
13 H 0.076 0.924
14 C -0.144 4.144
15 N -0.534 5.534
16 Si 0.722 3.278
17 H -0.197 1.197
18 H -0.209 1.209
19 H -0.209 1.209
20 C -0.137 4.137
21 H 0.094 0.906
22 H 0.084 0.916
23 H 0.084 0.916
24 H 0.096 0.904
25 H 0.106 0.894
26 H 0.127 0.873
27 H 0.129 0.871
28 H 0.135 0.865
29 H 0.047 0.953
30 H 0.046 0.954
31 H 0.071 0.929
32 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -10.331 -6.931 -7.439 14.495
hybrid contribution 0.286 -0.202 1.000 1.060
sum -10.045 -7.133 -6.438 13.901
Atomic orbital electron populations
1.22392 0.94620 1.03308 1.03345 1.21569 0.94005 0.96653 0.82212
0.89785 1.92803 1.90381 1.83361 1.52944 1.21147 0.93311 1.01752
0.97684 1.19589 0.94012 0.96171 1.00007 1.20726 0.93667 0.99192
1.01751 1.21011 0.94613 0.98303 1.00219 1.21107 0.99899 0.94658
0.98612 1.20662 0.93077 0.96965 0.92654 1.18362 0.95832 0.90277
0.94516 1.21100 1.39969 1.00649 0.93137 0.92438 1.25016 0.95502
0.94966 0.98879 1.69970 1.41793 1.06087 1.35519 0.86486 0.77883
0.78558 0.84837 1.19673 1.20918 1.20927 1.20929 0.94984 0.97835
0.99960 0.90622 0.91611 0.91593 0.90432 0.89433 0.87303 0.87113
0.86537 0.95328 0.95378 0.92894 0.86583
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.63 9.65 37.15 0.36 -1.28 16
2 C 0.09 1.12 3.95 -26.74 -0.11 1.01 16
3 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16
4 F -0.21 -3.14 16.77 2.25 0.04 -3.10 16
5 C -0.10 -1.32 5.12 -27.89 -0.14 -1.46 16
6 C -0.10 -1.66 5.00 -104.63 -0.52 -2.18 16
7 C -0.14 -2.27 9.55 -39.59 -0.38 -2.65 16
8 C -0.12 -2.16 10.05 -39.59 -0.40 -2.55 16
9 C -0.12 -2.51 9.70 -39.58 -0.38 -2.90 16
10 C -0.03 -0.74 5.07 -104.62 -0.53 -1.27 16
11 C 0.05 1.22 5.10 -29.04 -0.15 1.07 16
12 C -0.51 -14.37 9.09 -34.45 -0.31 -14.69 16
13 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16
14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16
15 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16
16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16
17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
20 C -0.12 -2.34 9.36 -39.59 -0.37 -2.71 16
21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
24 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16
25 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16
26 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16
27 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16
28 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16
29 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16
30 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16
31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16
32 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16
LS Contribution 281.19 15.07 4.24 4.24
Total: -1.00 -30.22 281.19 -7.64 -37.86
By element:
Atomic # 1 Polarization: 2.89 SS G_CDS: -4.60 Total: -1.71 kcal
Atomic # 6 Polarization: -25.04 SS G_CDS: -3.03 Total: -28.07 kcal
Atomic # 7 Polarization: -26.48 SS G_CDS: 0.74 Total: -25.74 kcal
Atomic # 9 Polarization: -3.14 SS G_CDS: 0.04 Total: -3.10 kcal
Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -30.22 -7.64 -37.86 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260585747.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.545 kcal
(2) G-P(sol) polarization free energy of solvation -30.216 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.760 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.404 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds