Wall clock time and date at job start Mon Mar 30 2020 02:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47465 * 2 1 4 4 F 1.39902 * 109.46995 * 240.00474 * 2 1 3 5 5 C 1.52994 * 109.47505 * 120.00594 * 2 1 3 6 6 C 1.50696 * 109.47379 * 185.00113 * 5 2 1 7 7 C 1.38262 * 120.00098 * 269.97327 * 6 5 2 8 8 C 1.38204 * 120.00535 * 179.97438 * 7 6 5 9 9 C 1.38254 * 119.99816 * 0.13864 * 8 7 6 10 10 C 1.38220 * 120.00044 * 359.83750 * 9 8 7 11 11 C 1.50702 * 120.00039 * 180.36613 * 10 9 8 12 12 C 1.50690 * 109.47286 * 269.72879 * 11 10 9 13 13 H 1.07999 * 120.00161 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00164 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99696 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00395 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47291 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47120 * 119.99918 * 16 14 12 19 19 H 1.48497 * 109.47257 * 240.00250 * 16 14 12 20 20 C 1.38207 * 120.00352 * 89.99758 * 6 5 2 21 21 H 1.09001 * 109.46938 * 299.99738 * 1 2 3 22 22 H 1.08996 * 109.47548 * 59.99651 * 1 2 3 23 23 H 1.09007 * 109.47281 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47460 * 64.99585 * 5 2 1 25 25 H 1.09001 * 109.47147 * 304.99826 * 5 2 1 26 26 H 1.08013 * 119.99532 * 0.02562 * 7 6 5 27 27 H 1.07997 * 120.00478 * 180.02562 * 8 7 6 28 28 H 1.08002 * 120.00345 * 179.97438 * 9 8 7 29 29 H 1.09003 * 109.46871 * 29.72824 * 11 10 9 30 30 H 1.09001 * 109.47017 * 149.72162 * 11 10 9 31 31 H 0.97005 * 120.00116 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.00334 * 359.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9962 -0.6594 -1.1424 5 6 2.0400 -0.7213 1.2491 6 6 3.5419 -0.6150 1.3126 7 6 4.3293 -1.5820 0.7155 8 6 5.7066 -1.4843 0.7732 9 6 6.2972 -0.4209 1.4305 10 6 5.5101 0.5461 2.0269 11 6 6.1539 1.7095 2.7363 12 6 6.3687 1.3577 4.1857 13 1 6.0694 0.3884 4.5562 14 6 6.9483 2.2728 5.0387 15 7 7.3131 3.4530 4.5874 16 14 7.2139 1.8370 6.8356 17 1 6.7202 0.4595 7.0891 18 1 8.6627 1.9094 7.1535 19 1 6.4705 2.7952 7.6925 20 6 4.1323 0.4490 1.9680 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7516 -1.7716 1.2054 25 1 1.6054 -0.2619 2.1369 26 1 3.8678 -2.4135 0.2032 27 1 6.3217 -2.2394 0.3065 28 1 7.3736 -0.3447 1.4760 29 1 7.1137 1.9330 2.2705 30 1 5.5043 2.5821 2.6665 31 1 7.7206 4.0970 5.1876 32 1 3.5173 1.2044 2.4344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260585747.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:18 Heat of formation + Delta-G solvation = -56.404367 kcal Electronic energy + Delta-G solvation = -14457.498430 eV Core-core repulsion = 11910.071909 eV Total energy + Delta-G solvation = -2547.426521 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.47456 -38.75646 -34.46011 -33.20267 -31.20211 -30.53472 -27.15735 -26.25386 -23.29004 -22.03078 -21.06039 -19.66350 -16.46556 -16.32308 -15.87893 -15.18971 -15.09798 -14.58196 -14.45731 -13.82114 -12.90642 -12.68267 -12.45789 -12.43607 -12.23903 -11.92654 -11.75659 -11.24817 -11.06630 -11.01994 -10.71200 -10.64421 -10.45350 -10.15861 -9.50964 -9.42049 -8.43856 -8.12874 -7.75816 -6.05389 -4.09131 1.99793 2.16730 3.28308 3.35976 3.41193 4.33197 4.47707 4.64292 4.79431 4.82630 5.04032 5.28721 5.30490 5.40682 5.58546 5.62479 5.67567 5.86576 5.96537 5.98723 6.10713 6.19224 6.40227 6.65382 6.81776 7.13305 7.19594 7.23386 7.50585 7.76469 7.85726 7.90864 8.31597 8.96570 9.54814 11.04591 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.037121 B = 0.006188 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.118346 B = 4523.717356 C = 4828.762160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.092 3.908 3 H 0.084 0.916 4 F -0.214 7.214 5 C -0.101 4.101 6 C -0.098 4.098 7 C -0.135 4.135 8 C -0.123 4.123 9 C -0.125 4.125 10 C -0.034 4.034 11 C 0.047 3.953 12 C -0.510 4.510 13 H 0.057 0.943 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.119 4.119 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.417 -7.079 -7.468 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.056 3.944 3 H 0.102 0.898 4 F -0.195 7.195 5 C -0.139 4.139 6 C -0.098 4.098 7 C -0.153 4.153 8 C -0.141 4.141 9 C -0.143 4.143 10 C -0.034 4.034 11 C 0.010 3.990 12 C -0.549 4.549 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.137 4.137 21 H 0.094 0.906 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.135 0.865 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.331 -6.931 -7.439 14.495 hybrid contribution 0.286 -0.202 1.000 1.060 sum -10.045 -7.133 -6.438 13.901 Atomic orbital electron populations 1.22392 0.94620 1.03308 1.03345 1.21569 0.94005 0.96653 0.82212 0.89785 1.92803 1.90381 1.83361 1.52944 1.21147 0.93311 1.01752 0.97684 1.19589 0.94012 0.96171 1.00007 1.20726 0.93667 0.99192 1.01751 1.21011 0.94613 0.98303 1.00219 1.21107 0.99899 0.94658 0.98612 1.20662 0.93077 0.96965 0.92654 1.18362 0.95832 0.90277 0.94516 1.21100 1.39969 1.00649 0.93137 0.92438 1.25016 0.95502 0.94966 0.98879 1.69970 1.41793 1.06087 1.35519 0.86486 0.77883 0.78558 0.84837 1.19673 1.20918 1.20927 1.20929 0.94984 0.97835 0.99960 0.90622 0.91611 0.91593 0.90432 0.89433 0.87303 0.87113 0.86537 0.95328 0.95378 0.92894 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.65 37.15 0.36 -1.28 16 2 C 0.09 1.12 3.95 -26.74 -0.11 1.01 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 4 F -0.21 -3.14 16.77 2.25 0.04 -3.10 16 5 C -0.10 -1.32 5.12 -27.89 -0.14 -1.46 16 6 C -0.10 -1.66 5.00 -104.63 -0.52 -2.18 16 7 C -0.14 -2.27 9.55 -39.59 -0.38 -2.65 16 8 C -0.12 -2.16 10.05 -39.59 -0.40 -2.55 16 9 C -0.12 -2.51 9.70 -39.58 -0.38 -2.90 16 10 C -0.03 -0.74 5.07 -104.62 -0.53 -1.27 16 11 C 0.05 1.22 5.10 -29.04 -0.15 1.07 16 12 C -0.51 -14.37 9.09 -34.45 -0.31 -14.69 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.12 -2.34 9.36 -39.59 -0.37 -2.71 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 25 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 26 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 27 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 29 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 LS Contribution 281.19 15.07 4.24 4.24 Total: -1.00 -30.22 281.19 -7.64 -37.86 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.60 Total: -1.71 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -3.03 Total: -28.07 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.22 -7.64 -37.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260585747.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.545 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds