Wall clock time and date at job start Mon Mar 30 2020 03:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48567 * 110.99718 * 2 1 4 4 C 1.54377 * 104.59159 * 200.95714 * 3 2 1 5 5 C 1.54257 * 105.06382 * 23.85582 * 4 3 2 6 6 C 1.48720 * 111.01831 * 244.49018 * 2 1 3 7 7 H 1.09004 * 110.38960 * 40.24251 * 6 2 1 8 8 C 1.50698 * 110.50844 * 277.74858 * 6 2 1 9 9 O 1.33756 * 127.06560 * 319.89004 * 8 6 2 10 10 N 1.20565 * 113.30821 * 180.02562 * 9 8 6 11 11 C 1.29847 * 112.93654 * 359.97438 * 10 9 8 12 12 C 1.39657 * 127.06352 * 139.57575 * 8 6 2 13 13 C 1.41477 * 128.74361 * 359.97438 * 12 8 6 14 14 H 1.08005 * 119.99629 * 0.02562 * 13 12 8 15 15 C 1.39731 * 120.00499 * 180.02562 * 13 12 8 16 16 N 1.31007 * 119.99507 * 0.02562 * 15 13 12 17 17 Si 1.86790 * 120.00310 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47081 * 59.99804 * 17 15 13 19 19 H 1.48498 * 109.47109 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47186 * 300.00230 * 17 15 13 21 21 H 1.09001 * 109.47381 * 60.13026 * 1 2 3 22 22 H 1.09007 * 109.46597 * 180.12437 * 1 2 3 23 23 H 1.08998 * 109.47174 * 300.12470 * 1 2 3 24 24 H 1.08999 * 110.41133 * 82.17552 * 3 2 1 25 25 H 1.09004 * 110.50861 * 319.79003 * 3 2 1 26 26 H 1.08995 * 110.32829 * 264.95217 * 4 3 2 27 27 H 1.09009 * 110.32090 * 142.74935 * 4 3 2 28 28 H 1.09002 * 110.32715 * 118.89422 * 5 4 3 29 29 H 1.08998 * 110.32251 * 240.99949 * 5 4 3 30 30 H 1.07997 * 127.31941 * 180.02562 * 11 10 9 31 31 H 0.97000 * 119.99842 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4432 1.2502 -0.5343 5 6 3.4433 -0.0538 -1.3584 6 6 2.0024 -0.5979 -1.2529 7 1 1.4106 -0.2753 -2.1096 8 6 2.0141 -2.1018 -1.1570 9 8 2.3462 -2.8391 -0.0915 10 7 2.2683 -4.0258 -0.2896 11 6 1.8785 -4.3132 -1.4943 12 6 1.6747 -3.0119 -2.1604 13 6 1.2457 -2.7520 -3.4833 14 1 1.1462 -1.7334 -3.8284 15 6 0.9506 -3.8130 -4.3433 16 7 1.0708 -5.0485 -3.9245 17 14 0.3849 -3.4698 -6.0901 18 1 1.4358 -2.7063 -6.8098 19 1 0.1378 -4.7550 -6.7919 20 1 -0.8693 -2.6753 -6.0572 21 1 -0.3634 0.5118 -0.8911 22 1 -0.3633 -1.0278 0.0022 23 1 -0.3633 0.5158 0.8888 24 1 2.0077 1.7917 1.0120 25 1 1.4103 2.0229 -0.6591 26 1 4.1483 1.1750 0.2934 27 1 3.6936 2.0997 -1.1699 28 1 3.6937 0.1556 -2.3984 29 1 4.1497 -0.7685 -0.9361 30 1 1.7304 -5.2957 -1.9177 31 1 0.8656 -5.7850 -4.5213 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260633198.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:26 Heat of formation + Delta-G solvation = 30.825487 kcal Electronic energy + Delta-G solvation = -15393.877151 eV Core-core repulsion = 12870.153162 eV Total energy + Delta-G solvation = -2523.723989 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.62288 -39.69476 -36.07042 -33.20582 -33.03480 -32.66438 -29.32128 -27.63569 -26.41943 -23.53112 -22.60981 -21.66540 -20.78998 -19.16823 -17.72878 -17.52488 -16.81988 -16.61369 -15.82492 -15.30467 -14.74017 -14.60752 -14.36923 -13.91002 -13.27939 -13.03583 -13.01777 -12.72678 -12.57509 -12.26897 -12.21794 -11.94956 -11.82887 -11.49332 -11.35992 -11.26352 -10.35405 -9.69514 -9.36997 -8.66295 -6.39953 1.09305 1.39329 1.48178 1.52072 2.00873 2.20260 3.04941 3.11590 3.28382 3.87943 3.97129 4.14640 4.26920 4.37036 4.50418 4.58872 4.68935 4.74496 4.84680 4.91550 5.02017 5.07075 5.15603 5.28459 5.29413 5.36923 5.49513 5.71425 6.02709 6.20562 6.26503 6.69018 6.85080 8.22056 8.37403 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.029583 B = 0.009573 C = 0.008309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.263322 B = 2924.239683 C = 3369.124581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.529 5.529 3 C 0.031 3.969 4 C -0.113 4.113 5 C -0.117 4.117 6 C 0.186 3.814 7 H 0.061 0.939 8 C -0.220 4.220 9 O 0.082 5.918 10 N -0.418 5.418 11 C -0.065 4.065 12 C -0.017 4.017 13 C -0.458 4.458 14 H 0.085 0.915 15 C 0.026 3.974 16 N -0.848 5.848 17 Si 0.996 3.004 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.259 1.259 21 H 0.033 0.967 22 H 0.038 0.962 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.185 0.815 31 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 11.523 0.044 11.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.254 5.254 3 C -0.096 4.096 4 C -0.151 4.151 5 C -0.156 4.156 6 C 0.077 3.923 7 H 0.079 0.921 8 C -0.283 4.283 9 O 0.012 5.988 10 N -0.122 5.122 11 C -0.244 4.244 12 C -0.022 4.022 13 C -0.488 4.488 14 H 0.103 0.897 15 C -0.186 4.186 16 N -0.476 5.476 17 Si 0.816 3.184 18 H -0.181 1.181 19 H -0.195 1.195 20 H -0.183 1.183 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.107 0.893 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.202 0.798 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.528 10.237 1.498 10.359 hybrid contribution -0.887 -0.094 -2.094 2.276 sum -0.359 10.143 -0.596 10.167 Atomic orbital electron populations 1.22380 0.87747 1.00960 1.01383 1.65275 1.08757 1.16302 1.35049 1.23208 0.95485 0.88665 1.02212 1.22297 0.96574 0.96525 0.99730 1.22348 0.94768 0.97577 1.00914 1.20446 0.96510 0.84139 0.91177 0.92092 1.23959 1.22090 0.94416 0.87847 1.84066 1.66707 1.11110 1.36950 1.73070 1.21004 0.96701 1.21381 1.26625 1.06189 1.01750 0.89786 1.20283 0.97030 0.89544 0.95357 1.18949 1.40861 0.94715 0.94321 0.89709 1.26819 0.92737 0.93875 1.05160 1.69697 1.38372 1.00553 1.38969 0.85023 0.79544 0.78682 0.75102 1.18115 1.19465 1.18338 0.94821 0.94299 0.89316 0.88638 0.92684 0.90497 0.88863 0.90585 0.92972 0.79816 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 9.42 127.69 1.20 1.97 16 2 N -0.53 -18.41 5.33 -886.57 -4.73 -23.13 16 3 C 0.03 0.79 6.49 86.45 0.56 1.36 16 4 C -0.11 -2.77 7.00 31.49 0.22 -2.55 16 5 C -0.12 -3.92 6.53 31.49 0.21 -3.71 16 6 C 0.19 7.42 2.71 44.28 0.12 7.54 16 7 H 0.06 2.47 7.33 -2.38 -0.02 2.45 16 8 C -0.22 -11.06 6.24 26.03 0.16 -10.90 16 9 O 0.08 4.37 11.06 74.71 0.83 5.19 16 10 N -0.42 -23.26 11.96 -53.10 -0.64 -23.89 16 11 C -0.07 -3.72 11.25 87.46 0.98 -2.74 16 12 C -0.02 -0.93 6.24 -19.66 -0.12 -1.05 16 13 C -0.46 -24.34 9.25 23.43 0.22 -24.12 16 14 H 0.08 4.22 7.39 -2.91 -0.02 4.20 16 15 C 0.03 1.31 5.49 85.18 0.47 1.77 16 16 N -0.85 -44.31 10.66 21.80 0.23 -44.07 16 17 Si 1.00 37.60 29.56 68.60 2.03 39.63 16 18 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 19 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 20 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 21 H 0.03 1.00 7.98 -2.39 -0.02 0.98 16 22 H 0.04 1.48 8.06 -2.38 -0.02 1.46 16 23 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.05 1.23 7.98 -2.39 -0.02 1.21 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.05 1.94 7.85 -2.39 -0.02 1.92 16 30 H 0.19 10.62 6.30 -2.91 -0.02 10.60 16 31 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 Total: -1.00 -62.09 262.40 2.86 -59.23 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 1.12 Total: 19.48 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 4.02 Total: -32.43 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -5.13 Total: -91.10 kcal Atomic # 8 Polarization: 4.37 SS G_CDS: 0.83 Total: 5.19 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -62.09 2.86 -59.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260633198.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.052 kcal (2) G-P(sol) polarization free energy of solvation -62.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds