Wall clock time and date at job start Mon Mar 30 2020 03:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48569 * 110.99656 * 2 1 4 4 C 1.54378 * 104.59158 * 200.95968 * 3 2 1 5 5 C 1.54261 * 105.06228 * 23.85153 * 4 3 2 6 6 H 1.08997 * 110.32884 * 241.00087 * 5 4 3 7 7 C 1.50709 * 110.32272 * 118.89536 * 5 4 3 8 8 O 1.33759 * 127.06442 * 300.14879 * 7 5 4 9 9 N 1.20557 * 113.30379 * 180.27208 * 8 7 5 10 10 C 1.29851 * 112.93973 * 359.74695 * 9 8 7 11 11 C 1.39659 * 127.06230 * 119.99925 * 7 5 4 12 12 C 1.41475 * 128.74305 * 0.04040 * 11 7 5 13 13 H 1.07993 * 120.00059 * 10.70292 * 12 11 7 14 14 C 1.39728 * 119.99800 * 190.71078 * 12 11 7 15 15 N 1.31012 * 119.99782 * 172.42992 * 14 12 11 16 16 Si 1.86803 * 120.00335 * 352.42340 * 14 12 11 17 17 H 1.48497 * 109.46636 * 60.00295 * 16 14 12 18 18 H 1.48506 * 109.46879 * 300.00576 * 16 14 12 19 19 H 1.48494 * 109.47062 * 180.02562 * 16 14 12 20 20 C 1.48562 * 111.00305 * 244.58246 * 2 1 3 21 21 H 1.08996 * 109.47363 * 59.87675 * 1 2 3 22 22 H 1.08998 * 109.46778 * 179.87523 * 1 2 3 23 23 H 1.08997 * 109.47416 * 299.87463 * 1 2 3 24 24 H 1.08996 * 110.41292 * 82.18277 * 3 2 1 25 25 H 1.08994 * 110.40836 * 319.73521 * 3 2 1 26 26 H 1.08998 * 110.32407 * 264.95536 * 4 3 2 27 27 H 1.08998 * 110.32174 * 142.74691 * 4 3 2 28 28 H 1.08002 * 127.31434 * 180.02562 * 10 9 8 29 29 H 0.96995 * 120.00260 * 5.10736 * 15 14 12 30 30 H 1.09001 * 110.40829 * 40.25606 * 20 2 1 31 31 H 1.09000 * 110.40762 * 277.81832 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4432 1.2502 -0.5344 5 6 3.4433 -0.0538 -1.3585 6 1 4.1496 -0.7685 -0.9362 7 6 3.7895 0.2357 -2.7964 8 8 3.1254 1.0326 -3.6408 9 7 3.6196 1.0810 -4.7393 10 6 4.6876 0.3502 -4.8464 11 6 4.8712 -0.2709 -3.5201 12 6 5.8844 -1.1605 -3.0917 13 1 5.7895 -1.6712 -2.1449 14 6 7.0078 -1.3781 -3.8935 15 7 8.0129 -2.0827 -3.4354 16 14 7.0766 -0.6647 -5.6185 17 1 6.9681 0.8146 -5.5469 18 1 5.9515 -1.2053 -6.4230 19 1 8.3647 -1.0367 -6.2570 20 6 2.0015 -0.5953 -1.2527 21 1 -0.3634 0.5157 -0.8888 22 1 -0.3633 -1.0277 -0.0022 23 1 -0.3634 0.5119 0.8911 24 1 2.0078 1.7917 1.0120 25 1 1.4098 2.0212 -0.6602 26 1 4.1482 1.1750 0.2934 27 1 3.6935 2.0997 -1.1699 28 1 5.3096 0.2240 -5.7203 29 1 7.9474 -2.5151 -2.5697 30 1 1.4099 -0.2713 -2.1089 31 1 2.0080 -1.6831 -1.1837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260673944.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:40 Heat of formation + Delta-G solvation = 55.756517 kcal Electronic energy + Delta-G solvation = -15289.187207 eV Core-core repulsion = 12766.544309 eV Total energy + Delta-G solvation = -2522.642898 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.07718 -38.47596 -34.34175 -32.68251 -31.98351 -29.95639 -28.19259 -25.92957 -25.01303 -22.33699 -20.82197 -20.65271 -19.24555 -18.34190 -16.34204 -16.05161 -15.65086 -14.69633 -14.49294 -14.05744 -13.70593 -13.32499 -13.04971 -12.50890 -11.85025 -11.64757 -11.45730 -11.39907 -11.24948 -10.98965 -10.63954 -10.28915 -9.91205 -9.75380 -9.57622 -9.34018 -8.90489 -8.31355 -7.98046 -7.37532 -4.57479 2.75690 3.07732 3.11605 3.33470 3.56711 3.93262 4.23209 4.62996 4.98116 5.09128 5.18822 5.41080 5.47161 5.57423 5.61793 5.68449 5.88006 5.91470 5.98661 6.04279 6.23709 6.29828 6.53857 6.60791 6.76901 6.94576 7.08957 7.18541 7.22695 7.50547 8.05921 8.23171 8.65834 9.75371 10.01356 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042338 B = 0.008525 C = 0.007690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.181365 B = 3283.548296 C = 3640.063200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.520 5.520 3 C 0.033 3.967 4 C -0.119 4.119 5 C 0.040 3.960 6 H 0.095 0.905 7 C -0.245 4.245 8 O 0.088 5.912 9 N -0.370 5.370 10 C -0.124 4.124 11 C 0.013 3.987 12 C -0.483 4.483 13 H 0.083 0.917 14 C 0.043 3.957 15 N -0.824 5.824 16 Si 1.068 2.932 17 H -0.269 1.269 18 H -0.271 1.271 19 H -0.283 1.283 20 C 0.037 3.963 21 H 0.027 0.973 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.169 0.831 29 H 0.286 0.714 30 H 0.048 0.952 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 3.219 4.205 9.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.243 5.243 3 C -0.095 4.095 4 C -0.157 4.157 5 C 0.020 3.980 6 H 0.113 0.887 7 C -0.307 4.307 8 O 0.012 5.988 9 N -0.069 5.069 10 C -0.302 4.302 11 C 0.008 3.992 12 C -0.514 4.514 13 H 0.101 0.899 14 C -0.176 4.176 15 N -0.448 5.448 16 Si 0.897 3.103 17 H -0.196 1.196 18 H -0.199 1.199 19 H -0.210 1.210 20 C -0.091 4.091 21 H 0.046 0.954 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.185 0.815 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.468 3.776 2.555 8.750 hybrid contribution -0.674 -0.378 0.958 1.231 sum -8.142 3.398 3.512 9.496 Atomic orbital electron populations 1.22472 0.88702 1.01829 1.00436 1.65376 1.07631 1.15545 1.35790 1.23119 0.95986 0.90005 1.00373 1.22434 0.95496 0.98585 0.99230 1.19612 0.95466 0.96185 0.86719 0.88729 1.23268 1.02332 1.10186 0.94910 1.84018 1.46124 1.53672 1.15028 1.73009 1.11804 1.20527 1.01589 1.26293 0.99333 1.04524 1.00019 1.20004 0.94460 0.95595 0.89178 1.19823 1.02767 1.22404 1.06377 0.89920 1.26993 0.91040 0.94344 1.05176 1.70621 1.29582 1.23576 1.20991 0.83807 0.75659 0.77117 0.73730 1.19600 1.19860 1.21018 1.23282 0.95699 0.99909 0.90210 0.95439 0.91548 0.91725 0.90656 0.93926 0.91238 0.90983 0.81454 0.90279 0.93347 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.53 60.06 0.57 0.75 16 2 N -0.52 -7.93 5.66 -238.24 -1.35 -9.28 16 3 C 0.03 0.48 6.49 -2.18 -0.01 0.47 16 4 C -0.12 -2.00 6.64 -25.35 -0.17 -2.17 16 5 C 0.04 0.78 3.51 -90.39 -0.32 0.46 16 6 H 0.09 1.92 7.38 -51.93 -0.38 1.53 16 7 C -0.25 -5.68 5.91 -33.77 -0.20 -5.88 16 8 O 0.09 2.06 10.94 18.00 0.20 2.26 16 9 N -0.37 -9.10 11.96 32.03 0.38 -8.72 16 10 C -0.12 -3.11 9.86 -14.57 -0.14 -3.25 16 11 C 0.01 0.34 6.04 -104.31 -0.63 -0.29 16 12 C -0.48 -12.84 9.65 -37.79 -0.36 -13.20 16 13 H 0.08 2.23 7.49 -52.49 -0.39 1.83 16 14 C 0.04 1.11 5.51 -17.34 -0.10 1.02 16 15 N -0.82 -21.91 13.67 55.54 0.76 -21.15 16 16 Si 1.07 23.87 24.44 -169.99 -4.15 19.71 16 17 H -0.27 -5.90 6.57 56.52 0.37 -5.53 16 18 H -0.27 -5.80 6.70 56.52 0.38 -5.42 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 C 0.04 0.63 6.03 -2.18 -0.01 0.62 16 21 H 0.03 0.34 7.97 -51.93 -0.41 -0.07 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.04 0.62 7.97 -51.93 -0.41 0.20 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.07 1.27 7.70 -51.93 -0.40 0.87 16 28 H 0.17 3.94 2.96 -52.49 -0.16 3.78 16 29 H 0.29 7.37 8.73 -40.82 -0.36 7.02 16 30 H 0.05 0.87 7.52 -51.93 -0.39 0.48 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 254.62 15.07 3.84 3.84 Total: -1.00 -27.54 254.62 -5.57 -33.11 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -3.87 Total: 1.68 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -1.37 Total: -21.46 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: -0.21 Total: -39.14 kcal Atomic # 8 Polarization: 2.06 SS G_CDS: 0.20 Total: 2.26 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -4.15 Total: 19.71 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.54 -5.57 -33.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260673944.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.871 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds