Wall clock time and date at job start Mon Mar 30 2020 03:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35197 * 126.00198 * 2 1 4 4 C 1.34571 * 107.61664 * 179.97438 * 3 2 1 5 5 C 1.40488 * 108.04025 * 0.09971 * 4 3 2 6 6 N 1.30130 * 108.22502 * 359.87494 * 5 4 3 7 7 C 1.50943 * 123.48759 * 179.84058 * 5 4 3 8 8 O 1.42904 * 109.71639 * 103.11313 * 7 5 4 9 9 C 1.50698 * 109.71495 * 223.71551 * 7 5 4 10 10 H 1.08002 * 120.00102 * 114.52809 * 9 7 5 11 11 C 1.37876 * 120.00030 * 294.52349 * 9 7 5 12 12 N 1.31515 * 120.00174 * 1.13152 * 11 9 7 13 13 Si 1.86805 * 119.99983 * 181.40989 * 11 9 7 14 14 H 1.48498 * 109.46817 * 269.72068 * 13 11 9 15 15 H 1.48500 * 109.47190 * 29.72440 * 13 11 9 16 16 H 1.48500 * 109.47032 * 149.72532 * 13 11 9 17 17 C 1.53372 * 108.20698 * 343.39026 * 7 5 4 18 18 C 1.53042 * 109.74158 * 50.65286 * 17 7 5 19 19 C 1.50887 * 128.32799 * 180.29489 * 4 3 2 20 20 H 1.09000 * 109.47333 * 270.02279 * 1 2 3 21 21 H 1.08999 * 109.46911 * 30.02375 * 1 2 3 22 22 H 1.09001 * 109.46941 * 150.02566 * 1 2 3 23 23 H 1.08002 * 126.19276 * 0.02562 * 3 2 1 24 24 H 0.96699 * 113.99564 * 54.61795 * 8 7 5 25 25 H 0.96998 * 119.99634 * 6.02746 * 12 11 9 26 26 H 1.09000 * 109.42513 * 170.73027 * 17 7 5 27 27 H 1.08999 * 109.42498 * 290.56877 * 17 7 5 28 28 H 1.09004 * 109.42800 * 168.19172 * 18 17 7 29 29 H 1.09001 * 109.43424 * 48.35100 * 18 17 7 30 30 H 1.09001 * 109.71633 * 282.92979 * 19 4 3 31 31 H 1.09007 * 109.71342 * 43.52744 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0937 0.0000 4 6 3.5368 0.6693 0.0006 5 6 3.5283 -0.7356 -0.0014 6 7 2.2899 -1.1351 -0.0004 7 6 4.7821 -1.5760 -0.0049 8 8 5.0151 -2.0997 1.3041 9 6 4.6317 -2.7094 -0.9866 10 1 5.2606 -2.7512 -1.8637 11 6 3.6913 -3.6930 -0.7651 12 7 2.9104 -3.6303 0.2913 13 14 3.5316 -5.1189 -1.9613 14 1 2.5474 -4.7710 -3.0175 15 1 4.8513 -5.3921 -2.5849 16 1 3.0690 -6.3271 -1.2323 17 6 5.9568 -0.6825 -0.4223 18 6 5.9634 0.5920 0.4250 19 6 4.7981 1.4974 0.0069 20 1 -0.3634 0.0004 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5134 23 1 1.9295 2.1220 0.0004 24 1 4.2669 -2.5910 1.6700 25 1 2.9349 -2.8499 0.8668 26 1 6.8926 -1.2212 -0.2740 27 1 5.8546 -0.4176 -1.4747 28 1 6.9049 1.1210 0.2768 29 1 5.8583 0.3284 1.4774 30 1 4.9814 1.8958 -0.9910 31 1 4.6957 2.3179 0.7172 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260723536.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:36 Heat of formation + Delta-G solvation = 8.728214 kcal Electronic energy + Delta-G solvation = -15941.214763 eV Core-core repulsion = 13416.532564 eV Total energy + Delta-G solvation = -2524.682198 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.21628 -38.83235 -36.04643 -34.14368 -33.20880 -31.60421 -29.38832 -27.74234 -26.19653 -23.30430 -22.59714 -21.61326 -19.90347 -19.41330 -17.59071 -16.62913 -16.23019 -15.84357 -15.54288 -15.45434 -15.07063 -14.53323 -13.94820 -13.59433 -13.50524 -13.26294 -12.98627 -12.84871 -12.57748 -12.24634 -11.96863 -11.88561 -11.73300 -11.22660 -11.07325 -10.50072 -10.17819 -9.88836 -9.02641 -8.46726 -6.32445 1.19496 1.49146 1.57677 1.75655 1.92355 2.02120 2.57799 3.19331 3.67614 3.88487 4.07127 4.21045 4.23055 4.35374 4.43803 4.49039 4.64570 4.74200 4.85073 4.95022 4.99188 5.09469 5.22339 5.43224 5.47164 5.55308 5.90506 5.99656 6.21163 6.43384 6.69779 6.95899 7.15582 7.50653 8.85386 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.024698 B = 0.014350 C = 0.010256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.418482 B = 1950.771478 C = 2729.570327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.407 5.407 3 C 0.050 3.950 4 C -0.270 4.270 5 C 0.042 3.958 6 N -0.297 5.297 7 C 0.289 3.711 8 O -0.591 6.591 9 C -0.646 4.646 10 H 0.044 0.956 11 C -0.008 4.008 12 N -0.901 5.901 13 Si 1.113 2.887 14 H -0.283 1.283 15 H -0.274 1.274 16 H -0.279 1.279 17 C -0.085 4.085 18 C -0.110 4.110 19 C -0.027 4.027 20 H 0.079 0.921 21 H 0.121 0.879 22 H 0.069 0.931 23 H 0.215 0.785 24 H 0.360 0.640 25 H 0.274 0.726 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 11.672 -1.089 11.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.190 5.190 3 C -0.094 4.094 4 C -0.282 4.282 5 C -0.127 4.127 6 N -0.118 5.118 7 C 0.248 3.752 8 O -0.398 6.398 9 C -0.684 4.684 10 H 0.063 0.937 11 C -0.211 4.211 12 N -0.543 5.543 13 Si 0.936 3.064 14 H -0.209 1.209 15 H -0.200 1.200 16 H -0.205 1.205 17 C -0.123 4.123 18 C -0.148 4.148 19 C -0.065 4.065 20 H 0.098 0.902 21 H 0.139 0.861 22 H 0.088 0.912 23 H 0.232 0.768 24 H 0.210 0.790 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.697 9.577 -1.380 10.358 hybrid contribution 0.496 1.377 0.337 1.502 sum -3.201 10.954 -1.043 11.460 Atomic orbital electron populations 1.21980 0.73069 1.04977 1.03814 1.49339 1.07737 1.03879 1.58038 1.22541 0.90046 0.94492 1.02369 1.20657 0.96694 0.93239 1.17563 1.23995 0.94624 0.95498 0.98581 1.77602 1.02656 1.07548 1.24044 1.17646 0.87016 0.89609 0.80921 1.86294 1.44478 1.74103 1.34947 1.22681 1.22906 1.12288 1.10563 0.93718 1.26977 0.91749 1.03154 0.99201 1.70806 1.38647 1.30588 1.14253 0.83002 0.76468 0.73281 0.73620 1.20896 1.19968 1.20458 1.21372 0.96333 0.95423 0.99195 1.21531 0.99271 0.95058 0.98928 1.19986 0.88867 0.95748 1.01915 0.90248 0.86109 0.91239 0.76809 0.79045 0.90933 0.92648 0.91775 0.89166 0.93591 0.90452 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.77 11.47 127.77 1.47 4.24 16 2 N -0.41 -16.01 4.02 -369.97 -1.49 -17.50 16 3 C 0.05 1.69 11.45 83.33 0.95 2.65 16 4 C -0.27 -10.94 5.89 -20.10 -0.12 -11.06 16 5 C 0.04 2.16 5.58 43.44 0.24 2.40 16 6 N -0.30 -15.59 9.44 -47.14 -0.45 -16.03 16 7 C 0.29 15.74 0.77 -12.09 -0.01 15.73 16 8 O -0.59 -33.90 12.52 -148.98 -1.87 -35.76 16 9 C -0.65 -38.76 8.21 25.60 0.21 -38.55 16 10 H 0.04 2.67 7.75 -2.91 -0.02 2.64 16 11 C -0.01 -0.45 5.06 84.65 0.43 -0.02 16 12 N -0.90 -55.70 12.13 21.45 0.26 -55.44 16 13 Si 1.11 53.15 29.90 68.60 2.05 55.20 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 C -0.09 -3.84 4.82 30.73 0.15 -3.69 16 18 C -0.11 -3.95 5.85 30.73 0.18 -3.77 16 19 C -0.03 -0.86 6.28 30.03 0.19 -0.68 16 20 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 21 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.22 4.59 8.06 -2.91 -0.02 4.56 16 24 H 0.36 21.45 6.07 -74.06 -0.45 21.00 16 25 H 0.27 16.93 3.32 -92.71 -0.31 16.63 16 26 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.06 2.81 8.07 -2.39 -0.02 2.80 16 28 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 29 H 0.05 1.81 7.74 -2.39 -0.02 1.79 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -76.92 252.74 3.35 -73.57 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 1.14 Total: 28.71 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 3.69 Total: -32.75 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -1.67 Total: -88.98 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -1.87 Total: -35.76 kcal Atomic # 14 Polarization: 53.15 SS G_CDS: 2.05 Total: 55.20 kcal Total: -76.92 3.35 -73.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260723536.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.302 kcal (2) G-P(sol) polarization free energy of solvation -76.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds