Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.45480 * 2 1 4 4 C 1.53109 * 109.46277 * 119.97348 * 2 1 3 5 5 C 1.53364 * 109.50770 * 190.28118 * 4 2 1 6 6 C 1.50818 * 108.41728 * 310.03760 * 5 4 2 7 7 N 1.34251 * 128.09368 * 196.60135 * 6 5 4 8 8 H 0.96999 * 126.07065 * 359.91082 * 7 6 5 9 9 N 1.40302 * 107.83815 * 179.88196 * 7 6 5 10 10 C 1.31067 * 108.27189 * 0.07343 * 9 7 6 11 11 C 1.35827 * 124.06439 * 16.60463 * 6 5 4 12 12 C 1.50837 * 124.12900 * 0.11413 * 11 6 5 13 13 O 1.42894 * 109.68679 * 256.87364 * 12 11 6 14 14 C 1.50702 * 109.68330 * 136.31826 * 12 11 6 15 15 H 1.08000 * 120.00518 * 146.37051 * 14 12 11 16 16 C 1.37885 * 119.99893 * 326.37103 * 14 12 11 17 17 N 1.31515 * 120.00096 * 163.35149 * 16 14 12 18 18 Si 1.86802 * 119.99836 * 343.35188 * 16 14 12 19 19 H 1.48497 * 109.46957 * 93.64758 * 18 16 14 20 20 H 1.48499 * 109.47194 * 213.64790 * 18 16 14 21 21 H 1.48502 * 109.47034 * 333.64882 * 18 16 14 22 22 H 1.08995 * 109.47415 * 300.02248 * 1 2 3 23 23 H 1.09004 * 109.46618 * 60.02463 * 1 2 3 24 24 H 1.09002 * 109.46618 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46071 * 70.27459 * 4 2 1 26 26 H 1.09000 * 109.46133 * 310.29249 * 4 2 1 27 27 H 1.09004 * 109.68004 * 69.78297 * 5 4 2 28 28 H 1.09006 * 109.67625 * 190.29306 * 5 4 2 29 29 H 1.08002 * 125.96114 * 179.97438 * 10 9 7 30 30 H 0.96701 * 114.00410 * 298.92252 * 13 12 11 31 31 H 0.97004 * 119.99476 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0402 -0.7212 1.2505 5 6 3.5519 -0.5022 1.3872 6 6 4.2021 -0.8288 0.0661 7 7 5.4994 -1.0697 -0.1815 8 1 6.2159 -1.0655 0.4722 9 7 5.6341 -1.3291 -1.5537 10 6 4.4488 -1.2430 -2.1065 11 6 3.5287 -0.9280 -1.1093 12 6 2.0412 -0.7226 -1.2524 13 8 1.3903 -1.9885 -1.3770 14 6 1.7596 0.1159 -2.4725 15 1 0.8636 -0.0554 -3.0506 16 6 2.6460 1.1020 -2.8510 17 7 2.5890 1.6073 -4.0638 18 14 3.9280 1.7199 -1.6409 19 1 5.1923 0.9645 -1.8305 20 1 4.1749 3.1652 -1.8764 21 1 3.4359 1.5213 -0.2540 22 1 -0.3634 0.5141 0.8897 23 1 -0.3633 0.5135 -0.8903 24 1 -0.3633 -1.0277 0.0005 25 1 1.8341 -1.7881 1.1639 26 1 1.5346 -0.3239 2.1306 27 1 3.7502 0.5378 1.6468 28 1 3.9489 -1.1564 2.1635 29 1 4.2247 -1.3902 -3.1527 30 1 1.6676 -2.4991 -2.1500 31 1 3.2129 2.3008 -4.3301 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260746495.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = 33.532591 kcal Electronic energy + Delta-G solvation = -16378.308241 eV Core-core repulsion = 13854.701642 eV Total energy + Delta-G solvation = -2523.606600 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.12089 -37.28669 -34.28883 -32.57595 -31.22090 -30.21709 -28.70381 -25.86710 -24.00047 -21.97604 -20.94558 -19.95720 -18.66133 -17.11622 -16.36287 -15.37183 -14.83141 -14.20411 -13.82944 -13.53662 -13.16378 -12.79072 -12.60964 -12.25004 -12.20385 -11.58481 -11.28298 -10.97620 -10.74560 -10.49774 -10.31176 -10.13617 -9.69196 -9.37965 -9.15440 -8.77413 -8.58980 -8.22068 -7.55965 -6.12604 -4.12260 2.45300 3.34488 3.37372 3.44236 3.51445 3.60432 4.49344 5.08854 5.17189 5.35589 5.44027 5.61297 5.64993 5.90982 6.03599 6.12878 6.20734 6.37743 6.47494 6.50601 6.63405 6.71128 6.88589 7.11312 7.29086 7.39961 7.50493 7.66292 7.85414 8.31894 8.49082 8.78773 9.06066 9.59361 10.97365 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.021404 C = 0.015127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.820086 B = 1307.878723 C = 1850.564831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 H 0.079 0.921 4 C -0.110 4.110 5 C -0.054 4.054 6 C 0.077 3.923 7 N -0.483 5.483 8 H 0.427 0.573 9 N -0.313 5.313 10 C 0.086 3.914 11 C -0.239 4.239 12 C 0.307 3.693 13 O -0.569 6.569 14 C -0.546 4.546 15 H 0.080 0.920 16 C 0.092 3.908 17 N -0.886 5.886 18 Si 0.852 3.148 19 H -0.263 1.263 20 H -0.310 1.310 21 H -0.247 1.247 22 H 0.030 0.970 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.183 0.817 30 H 0.364 0.636 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -3.975 9.987 10.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.101 4.101 3 H 0.098 0.902 4 C -0.148 4.148 5 C -0.093 4.093 6 C -0.052 4.052 7 N -0.190 5.190 8 H 0.269 0.731 9 N -0.136 5.136 10 C -0.100 4.100 11 C -0.251 4.251 12 C 0.266 3.734 13 O -0.374 6.374 14 C -0.583 4.583 15 H 0.098 0.902 16 C -0.112 4.112 17 N -0.522 5.522 18 Si 0.682 3.318 19 H -0.188 1.188 20 H -0.239 1.239 21 H -0.172 1.172 22 H 0.049 0.951 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.200 0.800 30 H 0.210 0.790 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.011 -3.881 10.165 11.290 hybrid contribution 0.783 0.665 0.376 1.094 sum 3.794 -3.216 10.541 11.656 Atomic orbital electron populations 1.21533 0.95284 1.01255 1.00274 1.21597 0.96151 0.99520 0.92866 0.90250 1.21683 0.92279 1.02022 0.98827 1.20369 0.96733 1.01258 0.90952 1.21003 0.85113 1.01308 0.97824 1.45979 1.06783 1.57979 1.08271 0.73103 1.77388 1.22818 1.26042 0.87314 1.23540 0.89272 0.96656 1.00486 1.21108 1.00438 1.12820 0.90715 1.17378 0.80769 0.81805 0.93475 1.86284 1.68558 1.32542 1.50024 1.21343 1.09070 1.18194 1.09653 0.90174 1.24898 0.96313 0.95893 0.94095 1.70006 1.37566 1.27642 1.16962 0.87459 0.83627 0.76771 0.83972 1.18846 1.23906 1.17244 0.95087 0.91842 0.92820 0.91189 0.92287 0.90507 0.91230 0.80021 0.78999 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.79 37.16 0.33 -2.09 16 2 C -0.08 -1.69 1.67 -90.37 -0.15 -1.84 16 3 H 0.08 1.75 4.94 -51.93 -0.26 1.49 16 4 C -0.11 -1.86 5.19 -26.49 -0.14 -2.00 16 5 C -0.05 -0.86 5.82 -27.64 -0.16 -1.02 16 6 C 0.08 1.47 4.96 -82.34 -0.41 1.06 16 7 N -0.48 -8.77 7.11 33.48 0.24 -8.53 16 8 H 0.43 6.00 8.96 -182.45 -1.64 4.37 16 9 N -0.31 -6.58 11.88 30.54 0.36 -6.22 16 10 C 0.09 1.89 8.80 -17.49 -0.15 1.73 16 11 C -0.24 -5.18 2.60 -105.03 -0.27 -5.45 16 12 C 0.31 6.90 0.52 -92.67 -0.05 6.85 16 13 O -0.57 -12.15 11.55 -35.23 -0.41 -12.56 16 14 C -0.55 -14.47 8.04 -34.44 -0.28 -14.75 16 15 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 16 C 0.09 2.55 4.91 -17.82 -0.09 2.46 16 17 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 18 Si 0.85 21.13 22.05 -169.99 -3.75 17.38 16 19 H -0.26 -6.61 5.07 56.52 0.29 -6.32 16 20 H -0.31 -8.14 7.11 56.52 0.40 -7.74 16 21 H -0.25 -5.64 3.26 56.52 0.18 -5.46 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 1.32 7.59 -51.93 -0.39 0.93 16 24 H 0.05 1.01 7.48 -51.93 -0.39 0.62 16 25 H 0.07 1.22 7.78 -51.93 -0.40 0.81 16 26 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 27 H 0.08 1.19 7.58 -51.93 -0.39 0.79 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.18 3.96 8.06 -52.49 -0.42 3.54 16 30 H 0.36 6.99 9.04 45.56 0.41 7.40 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 235.47 15.07 3.55 3.55 Total: -1.00 -31.19 235.47 -5.24 -36.43 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -4.64 Total: 10.49 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -1.37 Total: -15.05 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 1.37 Total: -40.23 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.41 Total: -12.56 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -3.75 Total: 17.38 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.19 -5.24 -36.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260746495.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.961 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds