Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.45480 * 2 1 4 4 C 1.53109 * 109.46277 * 119.97348 * 2 1 3 5 5 C 1.53364 * 109.50770 * 190.28118 * 4 2 1 6 6 C 1.50818 * 108.41728 * 310.03760 * 5 4 2 7 7 N 1.34251 * 128.09368 * 196.60135 * 6 5 4 8 8 H 0.96999 * 126.07065 * 359.91082 * 7 6 5 9 9 N 1.40302 * 107.83815 * 179.88196 * 7 6 5 10 10 C 1.31067 * 108.27189 * 0.07343 * 9 7 6 11 11 C 1.35827 * 124.06439 * 16.60463 * 6 5 4 12 12 C 1.50837 * 124.12900 * 0.11413 * 11 6 5 13 13 O 1.42894 * 109.68679 * 256.87364 * 12 11 6 14 14 C 1.50702 * 109.68330 * 136.31826 * 12 11 6 15 15 H 1.08000 * 120.00518 * 146.37051 * 14 12 11 16 16 C 1.37885 * 119.99893 * 326.37103 * 14 12 11 17 17 N 1.31515 * 120.00096 * 163.35149 * 16 14 12 18 18 Si 1.86802 * 119.99836 * 343.35188 * 16 14 12 19 19 H 1.48497 * 109.46957 * 93.64758 * 18 16 14 20 20 H 1.48499 * 109.47194 * 213.64790 * 18 16 14 21 21 H 1.48502 * 109.47034 * 333.64882 * 18 16 14 22 22 H 1.08995 * 109.47415 * 300.02248 * 1 2 3 23 23 H 1.09004 * 109.46618 * 60.02463 * 1 2 3 24 24 H 1.09002 * 109.46618 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46071 * 70.27459 * 4 2 1 26 26 H 1.09000 * 109.46133 * 310.29249 * 4 2 1 27 27 H 1.09004 * 109.68004 * 69.78297 * 5 4 2 28 28 H 1.09006 * 109.67625 * 190.29306 * 5 4 2 29 29 H 1.08002 * 125.96114 * 179.97438 * 10 9 7 30 30 H 0.96701 * 114.00410 * 298.92252 * 13 12 11 31 31 H 0.97004 * 119.99476 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0402 -0.7212 1.2505 5 6 3.5519 -0.5022 1.3872 6 6 4.2021 -0.8288 0.0661 7 7 5.4994 -1.0697 -0.1815 8 1 6.2159 -1.0655 0.4722 9 7 5.6341 -1.3291 -1.5537 10 6 4.4488 -1.2430 -2.1065 11 6 3.5287 -0.9280 -1.1093 12 6 2.0412 -0.7226 -1.2524 13 8 1.3903 -1.9885 -1.3770 14 6 1.7596 0.1159 -2.4725 15 1 0.8636 -0.0554 -3.0506 16 6 2.6460 1.1020 -2.8510 17 7 2.5890 1.6073 -4.0638 18 14 3.9280 1.7199 -1.6409 19 1 5.1923 0.9645 -1.8305 20 1 4.1749 3.1652 -1.8764 21 1 3.4359 1.5213 -0.2540 22 1 -0.3634 0.5141 0.8897 23 1 -0.3633 0.5135 -0.8903 24 1 -0.3633 -1.0277 0.0005 25 1 1.8341 -1.7881 1.1639 26 1 1.5346 -0.3239 2.1306 27 1 3.7502 0.5378 1.6468 28 1 3.9489 -1.1564 2.1635 29 1 4.2247 -1.3902 -3.1527 30 1 1.6676 -2.4991 -2.1500 31 1 3.2129 2.3008 -4.3301 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260746495.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = 7.690827 kcal Electronic energy + Delta-G solvation = -16379.428824 eV Core-core repulsion = 13854.701642 eV Total energy + Delta-G solvation = -2524.727183 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.69175 -38.91710 -35.83288 -34.60264 -32.87607 -31.75033 -30.34793 -27.64488 -25.60454 -23.56012 -22.58228 -21.53888 -20.32358 -18.93417 -18.01290 -17.17993 -16.47993 -15.81471 -15.42792 -15.21670 -14.73741 -14.66962 -14.15513 -14.02343 -13.66867 -13.12399 -12.96520 -12.57724 -12.45457 -12.25186 -11.97474 -11.74019 -11.44568 -11.16002 -10.83127 -10.50679 -10.31138 -10.13484 -9.18875 -8.28404 -6.29748 0.91476 1.39073 1.40362 1.48997 1.88025 2.02370 2.44202 3.07236 3.73517 3.91700 4.03421 4.11053 4.18181 4.48356 4.63958 4.73079 4.80630 4.89799 4.95097 5.12107 5.19896 5.24210 5.28341 5.51484 5.69422 5.72370 5.75048 5.90962 6.35532 6.49327 6.69412 6.78532 7.16782 7.52436 8.84692 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.021404 C = 0.015127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.820086 B = 1307.878723 C = 1850.564831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 H 0.065 0.935 4 C -0.104 4.104 5 C -0.056 4.056 6 C 0.094 3.906 7 N -0.463 5.463 8 H 0.448 0.552 9 N -0.328 5.328 10 C 0.067 3.933 11 C -0.272 4.272 12 C 0.308 3.692 13 O -0.571 6.571 14 C -0.537 4.537 15 H 0.034 0.966 16 C 0.044 3.956 17 N -0.937 5.937 18 Si 0.911 3.089 19 H -0.266 1.266 20 H -0.333 1.333 21 H -0.209 1.209 22 H 0.065 0.935 23 H 0.031 0.969 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.167 0.833 30 H 0.370 0.630 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 -4.436 13.976 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.142 4.142 5 C -0.095 4.095 6 C -0.037 4.037 7 N -0.173 5.173 8 H 0.295 0.705 9 N -0.151 5.151 10 C -0.117 4.117 11 C -0.283 4.283 12 C 0.266 3.734 13 O -0.376 6.376 14 C -0.575 4.575 15 H 0.053 0.947 16 C -0.155 4.155 17 N -0.576 5.576 18 Si 0.740 3.260 19 H -0.191 1.191 20 H -0.264 1.264 21 H -0.132 1.132 22 H 0.083 0.917 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.133 0.867 29 H 0.184 0.816 30 H 0.216 0.784 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.985 -4.378 14.186 15.372 hybrid contribution 0.412 0.716 -0.917 1.234 sum 4.397 -3.662 13.269 14.450 Atomic orbital electron populations 1.21486 0.94798 1.01251 1.00410 1.21553 0.96767 0.98696 0.93757 0.91694 1.21637 0.93323 1.01390 0.97855 1.20632 0.95574 1.03368 0.89907 1.21489 0.84995 0.98739 0.98492 1.45980 1.07388 1.56220 1.07671 0.70528 1.77331 1.22284 1.26582 0.88909 1.23432 0.90133 0.97813 1.00328 1.20977 0.99795 1.15572 0.92002 1.17267 0.82073 0.81310 0.92709 1.86253 1.68789 1.32201 1.50339 1.21582 1.06826 1.18338 1.10735 0.94739 1.25582 0.98477 0.96203 0.95230 1.70149 1.39277 1.28979 1.19189 0.86557 0.81127 0.74290 0.84023 1.19126 1.26393 1.13218 0.91658 0.95019 0.92863 0.91522 0.88634 0.88770 0.86661 0.81622 0.78356 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.44 8.79 71.98 0.63 -3.80 16 2 C -0.09 -3.39 1.67 -10.63 -0.02 -3.41 16 3 H 0.06 2.65 4.94 -2.39 -0.01 2.64 16 4 C -0.10 -2.95 5.19 30.75 0.16 -2.79 16 5 C -0.06 -1.42 5.82 30.01 0.17 -1.24 16 6 C 0.09 3.19 4.96 41.67 0.21 3.40 16 7 N -0.46 -14.91 7.11 -47.99 -0.34 -15.25 16 8 H 0.45 10.32 8.96 -213.19 -1.91 8.41 16 9 N -0.33 -13.15 11.88 -57.28 -0.68 -13.83 16 10 C 0.07 2.93 8.80 85.06 0.75 3.68 16 11 C -0.27 -11.26 2.60 -20.13 -0.05 -11.32 16 12 C 0.31 13.60 0.52 -12.12 -0.01 13.59 16 13 O -0.57 -24.14 11.55 -148.98 -1.72 -25.86 16 14 C -0.54 -29.47 8.04 25.60 0.21 -29.26 16 15 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 16 C 0.04 2.52 4.91 84.66 0.42 2.93 16 17 N -0.94 -58.21 13.96 21.45 0.30 -57.91 16 18 Si 0.91 43.95 22.05 68.60 1.51 45.46 16 19 H -0.27 -12.85 5.07 99.48 0.50 -12.35 16 20 H -0.33 -17.21 7.11 99.48 0.71 -16.50 16 21 H -0.21 -8.67 3.26 99.48 0.32 -8.35 16 22 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.03 1.31 7.59 -2.38 -0.02 1.29 16 24 H 0.05 1.91 7.48 -2.39 -0.02 1.89 16 25 H 0.07 1.97 7.78 -2.39 -0.02 1.96 16 26 H 0.10 2.09 8.11 -2.39 -0.02 2.07 16 27 H 0.09 2.19 7.58 -2.39 -0.02 2.17 16 28 H 0.12 2.00 8.14 -2.38 -0.02 1.99 16 29 H 0.17 7.55 8.06 -2.91 -0.02 7.53 16 30 H 0.37 14.46 9.04 -74.06 -0.67 13.79 16 31 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -69.90 235.47 -0.47 -70.37 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -2.01 Total: 25.25 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 2.47 Total: -28.21 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -0.72 Total: -87.00 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -1.72 Total: -25.86 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.51 Total: 45.46 kcal Total: -69.90 -0.47 -70.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260746495.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.056 kcal (2) G-P(sol) polarization free energy of solvation -69.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds