Wall clock time and date at job start Mon Mar 30 2020 03:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35759 * 117.00244 * 2 1 4 4 C 1.35948 * 126.19228 * 270.02677 * 3 2 1 5 5 C 1.50696 * 126.08106 * 359.97438 * 4 3 2 6 6 C 1.50702 * 109.47352 * 85.00462 * 5 4 3 7 7 H 1.08002 * 119.99581 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00369 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00203 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99850 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47261 * 90.00349 * 10 8 6 12 12 H 1.48503 * 109.47028 * 210.00240 * 10 8 6 13 13 H 1.48503 * 109.47325 * 330.00208 * 10 8 6 14 14 C 1.39819 * 107.83050 * 179.97438 * 4 3 2 15 15 N 1.30826 * 108.28531 * 359.97438 * 14 4 3 16 16 N 1.35129 * 126.19080 * 89.71575 * 3 2 1 17 17 C 1.46500 * 126.04063 * 0.02562 * 16 3 2 18 18 C 1.53002 * 117.50183 * 188.62279 * 17 16 3 19 19 C 1.52995 * 117.50188 * 119.99476 * 17 16 3 20 20 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46938 * 59.99818 * 1 2 3 22 22 H 1.09004 * 109.46926 * 299.99940 * 1 2 3 23 23 H 1.09005 * 109.47077 * 204.99564 * 5 4 3 24 24 H 1.08998 * 109.47824 * 324.99850 * 5 4 3 25 25 H 0.97002 * 120.00566 * 179.97438 * 9 8 6 26 26 H 1.08008 * 125.85370 * 179.97438 * 14 4 3 27 27 H 1.09003 * 115.54758 * 334.33176 * 17 16 3 28 28 H 1.08999 * 117.49794 * 359.97438 * 18 17 16 29 29 H 1.08998 * 117.49586 * 145.01984 * 18 17 16 30 30 H 1.08994 * 117.50407 * 214.98150 * 19 17 16 31 31 H 1.09005 * 117.49942 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.4094 1.9251 -1.0972 5 6 2.2010 1.5163 -2.5326 6 6 0.8167 1.9172 -2.9731 7 1 0.1540 2.4176 -2.2826 8 6 0.3959 1.6443 -4.2574 9 7 -0.8123 1.9937 -4.6417 10 14 1.5418 0.7783 -5.4516 11 1 1.3519 -0.6905 -5.3430 12 1 1.2355 1.2159 -6.8372 13 1 2.9492 1.1210 -5.1239 14 6 3.0116 3.1076 -0.6567 15 7 3.0105 3.1062 0.6516 16 7 2.4029 1.9230 1.0905 17 6 2.1942 1.5275 2.4856 18 6 2.4902 2.5687 3.5670 19 6 3.4332 1.3798 3.3710 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 2.9402 2.0114 -3.1623 24 1 2.3123 0.4358 -2.6226 25 1 -1.1083 1.8021 -5.5453 26 1 3.4094 3.8883 -1.2883 27 1 1.3657 0.8411 2.6608 28 1 2.8407 3.5478 3.2404 29 1 1.8564 2.5675 4.4537 30 1 3.4198 0.5965 4.1288 31 1 4.4037 1.5764 2.9154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260778835.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:45 Heat of formation + Delta-G solvation = 70.777596 kcal Electronic energy + Delta-G solvation = -15101.281698 eV Core-core repulsion = 12579.290163 eV Total energy + Delta-G solvation = -2521.991535 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.84514 -37.42229 -36.89874 -33.23480 -31.16799 -30.09000 -27.47827 -26.00581 -23.24229 -22.55550 -22.19657 -19.93756 -19.33897 -17.58446 -16.74579 -15.54092 -15.38103 -14.86990 -14.45830 -14.14858 -13.47302 -13.23125 -12.83578 -12.66089 -12.06041 -11.81296 -11.62279 -11.28137 -11.03517 -10.85656 -10.65017 -10.44703 -10.01177 -9.96414 -9.45004 -9.30209 -8.60343 -8.52475 -7.43577 -6.02934 -4.00244 2.10683 2.69260 3.33713 3.38384 3.41402 3.45677 3.74346 4.27462 4.47193 4.52532 4.72946 4.85697 5.29892 5.45979 5.52048 5.54636 5.62065 5.81388 5.87337 6.05827 6.13516 6.22128 6.36135 6.65853 6.87136 7.11010 7.27858 7.45677 7.77357 8.09006 8.24578 8.57077 9.01235 9.59145 11.10045 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.043868 B = 0.007796 C = 0.007355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.128031 B = 3590.748948 C = 3805.808312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.235 3.765 4 C -0.177 4.177 5 C 0.053 3.947 6 C -0.507 4.507 7 H 0.069 0.931 8 C 0.068 3.932 9 N -0.904 5.904 10 Si 0.877 3.123 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.264 1.264 14 C 0.055 3.945 15 N -0.295 5.295 16 N -0.362 5.362 17 C 0.088 3.912 18 C -0.166 4.166 19 C -0.180 4.180 20 H 0.092 0.908 21 H 0.079 0.921 22 H 0.034 0.966 23 H 0.028 0.972 24 H 0.023 0.977 25 H 0.263 0.737 26 H 0.184 0.816 27 H 0.135 0.865 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.336 -2.276 12.940 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.218 6.218 3 C 0.070 3.930 4 C -0.189 4.189 5 C 0.015 3.985 6 C -0.545 4.545 7 H 0.087 0.913 8 C -0.133 4.133 9 N -0.543 5.543 10 Si 0.704 3.296 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.188 1.188 14 C -0.129 4.129 15 N -0.119 5.119 16 N -0.154 5.154 17 C -0.016 4.016 18 C -0.204 4.204 19 C -0.219 4.219 20 H 0.110 0.890 21 H 0.098 0.902 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.200 0.800 27 H 0.152 0.848 28 H 0.129 0.871 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.545 -1.952 13.899 15.091 hybrid contribution -0.072 -0.786 -1.371 1.582 sum 5.474 -2.738 12.528 13.943 Atomic orbital electron populations 1.23176 0.78205 1.03074 1.02074 1.85995 1.20748 1.21791 1.93230 1.18684 1.00893 0.87173 0.86277 1.20290 1.06824 0.95061 0.96698 1.18102 0.97790 0.96270 0.86326 1.21001 0.97358 1.38351 0.97771 0.91258 1.24979 0.94943 0.95370 0.98009 1.69902 1.17794 1.47838 1.18787 0.86815 0.82172 0.80225 0.80371 1.20276 1.21442 1.18811 1.23594 0.99566 0.98205 0.91502 1.77213 1.20970 1.00564 1.13170 1.48189 1.48384 1.15014 1.03850 1.21583 1.00498 1.02954 0.76604 1.23254 1.02655 0.95902 0.98581 1.23409 0.95637 1.00792 1.02049 0.88979 0.90235 0.94754 0.95406 0.95923 0.92753 0.79958 0.84758 0.87110 0.87856 0.87834 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.13 101.05 1.12 1.64 16 2 O -0.31 -6.14 10.45 -18.99 -0.20 -6.34 16 3 C 0.23 4.91 6.94 -16.92 -0.12 4.80 16 4 C -0.18 -3.96 5.31 -104.85 -0.56 -4.52 16 5 C 0.05 1.31 4.50 -29.04 -0.13 1.18 16 6 C -0.51 -14.23 9.10 -34.44 -0.31 -14.54 16 7 H 0.07 2.13 7.98 -52.49 -0.42 1.71 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 10 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 14 C 0.06 1.11 11.95 -17.39 -0.21 0.90 16 15 N -0.29 -5.69 11.98 30.61 0.37 -5.32 16 16 N -0.36 -6.76 3.94 -54.98 -0.22 -6.97 16 17 C 0.09 1.25 6.85 -67.93 -0.47 0.78 16 18 C -0.17 -1.93 10.18 -26.73 -0.27 -2.20 16 19 C -0.18 -2.09 10.46 -26.73 -0.28 -2.37 16 20 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 21 H 0.08 1.64 7.59 -51.93 -0.39 1.25 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 24 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.18 3.10 8.06 -52.48 -0.42 2.68 16 27 H 0.13 1.69 8.14 -51.93 -0.42 1.27 16 28 H 0.11 1.45 7.83 -51.93 -0.41 1.04 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 273.83 15.07 4.13 4.13 Total: -1.00 -31.91 273.83 -5.25 -37.15 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.11 Total: -0.36 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -1.32 Total: -12.48 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.92 Total: -38.92 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.20 Total: -6.34 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.91 -5.25 -37.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260778835.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.932 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds