Wall clock time and date at job start Mon Mar 30 2020 03:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35759 * 117.00244 * 2 1 4 4 C 1.35948 * 126.19228 * 270.02677 * 3 2 1 5 5 C 1.50696 * 126.08106 * 359.97438 * 4 3 2 6 6 C 1.50702 * 109.47352 * 85.00462 * 5 4 3 7 7 H 1.08002 * 119.99581 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00369 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00203 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99850 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47261 * 90.00349 * 10 8 6 12 12 H 1.48503 * 109.47028 * 210.00240 * 10 8 6 13 13 H 1.48503 * 109.47325 * 330.00208 * 10 8 6 14 14 C 1.39819 * 107.83050 * 179.97438 * 4 3 2 15 15 N 1.30826 * 108.28531 * 359.97438 * 14 4 3 16 16 N 1.35129 * 126.19080 * 89.71575 * 3 2 1 17 17 C 1.46500 * 126.04063 * 0.02562 * 16 3 2 18 18 C 1.53002 * 117.50183 * 188.62279 * 17 16 3 19 19 C 1.52995 * 117.50188 * 119.99476 * 17 16 3 20 20 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46938 * 59.99818 * 1 2 3 22 22 H 1.09004 * 109.46926 * 299.99940 * 1 2 3 23 23 H 1.09005 * 109.47077 * 204.99564 * 5 4 3 24 24 H 1.08998 * 109.47824 * 324.99850 * 5 4 3 25 25 H 0.97002 * 120.00566 * 179.97438 * 9 8 6 26 26 H 1.08008 * 125.85370 * 179.97438 * 14 4 3 27 27 H 1.09003 * 115.54758 * 334.33176 * 17 16 3 28 28 H 1.08999 * 117.49794 * 359.97438 * 18 17 16 29 29 H 1.08998 * 117.49586 * 145.01984 * 18 17 16 30 30 H 1.08994 * 117.50407 * 214.98150 * 19 17 16 31 31 H 1.09005 * 117.49942 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.4094 1.9251 -1.0972 5 6 2.2010 1.5163 -2.5326 6 6 0.8167 1.9172 -2.9731 7 1 0.1540 2.4176 -2.2826 8 6 0.3959 1.6443 -4.2574 9 7 -0.8123 1.9937 -4.6417 10 14 1.5418 0.7783 -5.4516 11 1 1.3519 -0.6905 -5.3430 12 1 1.2355 1.2159 -6.8372 13 1 2.9492 1.1210 -5.1239 14 6 3.0116 3.1076 -0.6567 15 7 3.0105 3.1062 0.6516 16 7 2.4029 1.9230 1.0905 17 6 2.1942 1.5275 2.4856 18 6 2.4902 2.5687 3.5670 19 6 3.4332 1.3798 3.3710 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 2.9402 2.0114 -3.1623 24 1 2.3123 0.4358 -2.6226 25 1 -1.1083 1.8021 -5.5453 26 1 3.4094 3.8883 -1.2883 27 1 1.3657 0.8411 2.6608 28 1 2.8407 3.5478 3.2404 29 1 1.8564 2.5675 4.4537 30 1 3.4198 0.5965 4.1288 31 1 4.4037 1.5764 2.9154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260778835.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:45 Heat of formation + Delta-G solvation = 49.147033 kcal Electronic energy + Delta-G solvation = -15102.219669 eV Core-core repulsion = 12579.290163 eV Total energy + Delta-G solvation = -2522.929507 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.35268 -38.90298 -38.02055 -35.29002 -32.99316 -31.64625 -29.16672 -27.60444 -24.76531 -24.04195 -23.36759 -21.40663 -20.88749 -18.95594 -18.89980 -17.04201 -16.79645 -16.37429 -15.89746 -15.75044 -14.97200 -14.86943 -14.57826 -14.00527 -13.85598 -13.60606 -12.88102 -12.68754 -12.48890 -12.40361 -12.12148 -11.81719 -11.72838 -11.63710 -11.47959 -10.97179 -10.71765 -10.01181 -9.06858 -8.23844 -6.26479 0.59304 1.31966 1.40756 1.42043 1.54335 1.79585 2.40686 2.71376 2.82895 3.10773 3.41291 3.71720 3.91653 4.15078 4.21522 4.44867 4.51283 4.53141 4.66697 4.68907 4.82825 4.96315 5.01468 5.15291 5.16818 5.39846 5.52906 5.63799 5.75721 6.34178 6.55821 6.70996 6.77439 7.36335 8.92354 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.043868 B = 0.007796 C = 0.007355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.128031 B = 3590.748948 C = 3805.808312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.316 6.316 3 C 0.232 3.768 4 C -0.220 4.220 5 C 0.064 3.936 6 C -0.505 4.505 7 H 0.026 0.974 8 C 0.011 3.989 9 N -0.950 5.950 10 Si 0.944 3.056 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.246 1.246 14 C 0.050 3.950 15 N -0.296 5.296 16 N -0.355 5.355 17 C 0.045 3.955 18 C -0.150 4.150 19 C -0.162 4.162 20 H 0.127 0.873 21 H 0.036 0.964 22 H 0.056 0.944 23 H 0.035 0.965 24 H 0.018 0.982 25 H 0.266 0.734 26 H 0.205 0.795 27 H 0.151 0.849 28 H 0.094 0.906 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 -3.213 14.400 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.226 6.226 3 C 0.065 3.935 4 C -0.231 4.231 5 C 0.026 3.974 6 C -0.544 4.544 7 H 0.045 0.955 8 C -0.186 4.186 9 N -0.591 5.591 10 Si 0.768 3.232 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.169 1.169 14 C -0.134 4.134 15 N -0.121 5.121 16 N -0.146 5.146 17 C -0.057 4.057 18 C -0.188 4.188 19 C -0.200 4.200 20 H 0.145 0.855 21 H 0.055 0.945 22 H 0.074 0.926 23 H 0.053 0.947 24 H 0.037 0.963 25 H 0.075 0.925 26 H 0.221 0.779 27 H 0.169 0.831 28 H 0.112 0.888 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.795 -2.880 15.402 17.079 hybrid contribution -0.528 -0.483 -1.662 1.810 sum 6.267 -3.362 13.740 15.471 Atomic orbital electron populations 1.23248 0.76875 1.05011 1.00986 1.85963 1.21898 1.21449 1.93310 1.18771 1.00487 0.87283 0.86955 1.20248 1.09723 0.97025 0.96138 1.17877 0.95510 0.95830 0.88227 1.21136 0.98561 1.37505 0.97157 0.95540 1.25862 0.96529 0.96200 0.99984 1.70048 1.19935 1.49587 1.19505 0.85744 0.80677 0.79111 0.77690 1.19452 1.20948 1.16918 1.23890 0.99502 0.98034 0.91949 1.77171 1.21040 1.01061 1.12795 1.48492 1.46896 1.14030 1.05199 1.22199 1.03091 1.05572 0.74864 1.23355 1.02523 0.94700 0.98182 1.23484 0.93765 1.01602 1.01131 0.85527 0.94528 0.92581 0.94691 0.96344 0.92549 0.77872 0.83128 0.88771 0.84471 0.84479 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 11.13 113.37 1.26 2.41 16 2 O -0.32 -12.44 10.45 -90.85 -0.95 -13.39 16 3 C 0.23 9.67 6.94 83.65 0.58 10.26 16 4 C -0.22 -9.89 5.31 -20.02 -0.11 -10.00 16 5 C 0.06 3.17 4.50 29.10 0.13 3.30 16 6 C -0.51 -29.26 9.10 25.60 0.23 -29.03 16 7 H 0.03 1.71 7.98 -2.91 -0.02 1.69 16 8 C 0.01 0.64 5.47 84.65 0.46 1.10 16 9 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 10 Si 0.94 44.28 27.47 68.60 1.88 46.16 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 14 C 0.05 1.98 11.95 85.23 1.02 2.99 16 15 N -0.30 -11.23 11.98 -57.06 -0.68 -11.91 16 16 N -0.35 -12.89 3.94 -439.19 -1.73 -14.62 16 17 C 0.04 1.17 6.85 44.99 0.31 1.48 16 18 C -0.15 -3.03 10.18 30.60 0.31 -2.72 16 19 C -0.16 -3.24 10.46 30.59 0.32 -2.92 16 20 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 21 H 0.04 1.56 7.59 -2.39 -0.02 1.54 16 22 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 23 H 0.03 1.65 7.20 -2.38 -0.02 1.64 16 24 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 25 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.20 6.83 8.06 -2.91 -0.02 6.81 16 27 H 0.15 3.37 8.14 -2.39 -0.02 3.35 16 28 H 0.09 2.27 7.83 -2.39 -0.02 2.25 16 29 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.09 2.01 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -70.59 273.83 4.40 -66.19 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.06 Total: 9.53 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 4.52 Total: -23.13 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -2.12 Total: -85.35 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.95 Total: -13.39 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -70.59 4.40 -66.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260778835.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.337 kcal (2) G-P(sol) polarization free energy of solvation -70.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds