Wall clock time and date at job start Mon Mar 30 2020 03:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35283 * 117.00064 * 2 1 4 4 C 1.40256 * 126.52053 * 269.68687 * 3 2 1 5 5 C 1.41291 * 126.62005 * 0.02562 * 4 3 2 6 6 H 1.08001 * 119.99489 * 0.02562 * 5 4 3 7 7 C 1.39589 * 119.99970 * 179.97438 * 5 4 3 8 8 N 1.31156 * 119.99805 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00242 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47306 * 59.99888 * 9 7 5 11 11 H 1.48493 * 109.47510 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47010 * 300.00348 * 9 7 5 13 13 C 1.41840 * 106.75632 * 179.88652 * 4 3 2 14 14 N 1.30262 * 108.18917 * 0.38494 * 13 4 3 15 15 N 1.34918 * 126.51813 * 90.00530 * 3 2 1 16 16 C 1.46508 * 125.68737 * 359.95263 * 15 3 2 17 17 C 1.53784 * 113.61017 * 219.13991 * 16 15 3 18 18 C 1.53962 * 87.01515 * 220.04847 * 17 16 15 19 19 C 1.53777 * 113.61178 * 121.53074 * 16 15 3 20 20 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46938 * 59.99769 * 1 2 3 22 22 H 1.09004 * 109.46926 * 299.99890 * 1 2 3 23 23 H 0.97005 * 119.99860 * 179.97438 * 8 7 5 24 24 H 1.07999 * 125.90482 * 180.14538 * 13 4 3 25 25 H 1.08997 * 112.84595 * 350.33765 * 16 15 3 26 26 H 1.09000 * 113.61459 * 334.56395 * 17 16 15 27 27 H 1.08997 * 113.61084 * 105.47352 * 17 16 15 28 28 H 1.09000 * 113.53550 * 270.81306 * 18 17 16 29 29 H 1.08993 * 113.74142 * 139.94627 * 18 17 16 30 30 H 1.08996 * 113.61900 * 254.52696 * 19 16 15 31 31 H 1.09006 * 113.61815 * 25.43762 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 6 2.4276 1.9463 -1.1271 5 6 2.2477 1.5780 -2.4793 6 1 1.7707 0.6407 -2.7247 7 6 2.6856 2.4262 -3.4978 8 7 3.2645 3.5647 -3.1996 9 14 2.4472 1.9398 -5.2855 10 1 0.9987 1.7652 -5.5621 11 1 2.9948 3.0033 -6.1653 12 1 3.1590 0.6636 -5.5504 13 6 3.0289 3.1380 -0.6475 14 7 3.0124 3.1063 0.6546 15 7 2.4078 1.9207 1.0843 16 6 2.2038 1.5221 2.4793 17 6 1.7987 2.6859 3.3994 18 6 2.7301 2.0673 4.4578 19 6 3.5066 1.4336 3.2914 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 3.5691 4.1539 -3.9074 24 1 3.4342 3.9325 -1.2566 25 1 1.5662 0.6438 2.5795 26 1 2.1304 3.6608 3.0422 27 1 0.7460 2.6731 3.6818 28 1 2.2357 1.3386 5.1002 29 1 3.3072 2.8028 5.0181 30 1 3.8307 0.4115 3.4869 31 1 4.3061 2.0656 2.9047 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260804374.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:47 Heat of formation + Delta-G solvation = 55.281222 kcal Electronic energy + Delta-G solvation = -15266.788798 eV Core-core repulsion = 12744.125290 eV Total energy + Delta-G solvation = -2522.663508 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.71638 -37.71770 -36.50048 -33.47180 -30.10538 -28.69831 -26.49312 -25.31751 -24.83943 -23.71727 -20.34944 -19.54098 -18.59684 -17.39384 -16.21596 -15.17627 -14.86098 -14.76624 -14.22048 -13.99963 -13.10958 -12.92685 -12.52616 -12.11171 -11.81702 -11.53884 -11.25516 -11.16167 -11.06108 -10.78808 -10.58208 -10.31511 -10.18360 -10.12431 -9.37832 -9.25496 -8.54889 -7.66960 -7.16544 -6.50934 -4.00645 2.88185 3.17373 3.21178 3.24992 3.77251 4.09717 4.30150 4.86825 4.88307 4.96609 5.14012 5.28575 5.53959 5.73871 5.85086 5.90593 6.04919 6.07076 6.12005 6.24060 6.28181 6.30130 6.66357 6.83959 7.16524 7.45455 7.52414 7.78103 8.10723 8.60002 8.78261 9.09248 9.21788 9.45988 10.47280 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042439 B = 0.008354 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.619099 B = 3350.875400 C = 3819.251409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.294 6.294 3 C 0.050 3.950 4 C -0.007 4.007 5 C -0.422 4.422 6 H 0.071 0.929 7 C 0.066 3.934 8 N -0.835 5.835 9 Si 0.919 3.081 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.031 3.969 14 N -0.311 5.311 15 N -0.386 5.386 16 C 0.151 3.849 17 C -0.142 4.142 18 C -0.140 4.140 19 C -0.144 4.144 20 H 0.076 0.924 21 H 0.044 0.956 22 H 0.026 0.974 23 H 0.276 0.724 24 H 0.206 0.794 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 -2.269 7.372 8.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.204 6.204 3 C -0.111 4.111 4 C -0.018 4.018 5 C -0.455 4.455 6 H 0.090 0.910 7 C -0.146 4.146 8 N -0.466 5.466 9 Si 0.745 3.255 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.193 1.193 13 C -0.156 4.156 14 N -0.136 5.136 15 N -0.183 5.183 16 C 0.047 3.953 17 C -0.181 4.181 18 C -0.178 4.178 19 C -0.183 4.183 20 H 0.094 0.906 21 H 0.063 0.937 22 H 0.044 0.956 23 H 0.087 0.913 24 H 0.222 0.778 25 H 0.121 0.879 26 H 0.114 0.886 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.370 -1.798 8.320 8.836 hybrid contribution -0.690 -0.591 -1.522 1.773 sum -3.061 -2.389 6.798 7.829 Atomic orbital electron populations 1.23023 0.83573 1.00918 0.99789 1.86083 1.17576 1.23528 1.93212 1.19065 1.13352 0.91656 0.87012 1.17994 0.99618 0.92239 0.91934 1.18686 1.33713 1.04147 0.88984 0.91032 1.25711 0.93451 0.94176 1.01234 1.69492 1.33246 1.09477 1.34418 0.86196 0.79216 0.78793 0.81337 1.19466 1.20569 1.19339 1.24921 1.00738 1.00437 0.89515 1.76497 1.20724 1.00981 1.15392 1.47818 1.51477 1.15790 1.03243 1.22287 0.97476 0.97307 0.78264 1.23353 0.99082 0.99872 0.95756 1.22724 0.98767 1.00156 0.96161 1.23370 0.97958 1.01117 0.95870 0.90565 0.93677 0.95553 0.91283 0.77795 0.87908 0.88550 0.91911 0.90486 0.91180 0.91677 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.13 101.05 1.12 1.56 16 2 O -0.29 -6.98 10.34 -17.54 -0.18 -7.16 16 3 C 0.05 1.29 7.08 -15.44 -0.11 1.18 16 4 C -0.01 -0.20 5.95 -106.60 -0.63 -0.84 16 5 C -0.42 -11.70 9.38 -37.92 -0.36 -12.05 16 6 H 0.07 1.95 7.84 -52.49 -0.41 1.54 16 7 C 0.07 1.70 5.49 -17.34 -0.10 1.61 16 8 N -0.84 -21.80 10.32 55.53 0.57 -21.23 16 9 Si 0.92 19.63 29.56 -169.99 -5.02 14.60 16 10 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 13 C 0.03 0.83 10.90 -16.84 -0.18 0.65 16 14 N -0.31 -7.86 11.87 30.95 0.37 -7.49 16 15 N -0.39 -9.16 3.67 -53.19 -0.20 -9.35 16 16 C 0.15 2.82 4.63 -67.11 -0.31 2.51 16 17 C -0.14 -2.25 7.78 -25.82 -0.20 -2.45 16 18 C -0.14 -1.84 8.09 -25.82 -0.21 -2.05 16 19 C -0.14 -2.34 7.88 -25.92 -0.20 -2.54 16 20 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 21 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 24 H 0.21 5.54 5.76 -52.49 -0.30 5.24 16 25 H 0.10 1.81 8.00 -51.93 -0.42 1.39 16 26 H 0.10 1.71 7.72 -51.93 -0.40 1.31 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 268.12 15.07 4.04 4.04 Total: -1.00 -29.28 268.12 -5.64 -34.92 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.05 Total: 4.09 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -1.18 Total: -12.43 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.75 Total: -38.07 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.18 Total: -7.16 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.28 -5.64 -34.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260804374.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.205 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds