Wall clock time and date at job start Mon Mar 30 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35283 * 117.00064 * 2 1 4 4 C 1.40256 * 126.52053 * 269.68687 * 3 2 1 5 5 C 1.41291 * 126.62005 * 0.02562 * 4 3 2 6 6 H 1.08001 * 119.99489 * 0.02562 * 5 4 3 7 7 C 1.39589 * 119.99970 * 179.97438 * 5 4 3 8 8 N 1.31156 * 119.99805 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00242 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47306 * 59.99888 * 9 7 5 11 11 H 1.48493 * 109.47510 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47010 * 300.00348 * 9 7 5 13 13 C 1.41840 * 106.75632 * 179.88652 * 4 3 2 14 14 N 1.30262 * 108.18917 * 0.38494 * 13 4 3 15 15 N 1.34918 * 126.51813 * 90.00530 * 3 2 1 16 16 C 1.46508 * 125.68737 * 359.95263 * 15 3 2 17 17 C 1.53784 * 113.61017 * 219.13991 * 16 15 3 18 18 C 1.53962 * 87.01515 * 220.04847 * 17 16 15 19 19 C 1.53777 * 113.61178 * 121.53074 * 16 15 3 20 20 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46938 * 59.99769 * 1 2 3 22 22 H 1.09004 * 109.46926 * 299.99890 * 1 2 3 23 23 H 0.97005 * 119.99860 * 179.97438 * 8 7 5 24 24 H 1.07999 * 125.90482 * 180.14538 * 13 4 3 25 25 H 1.08997 * 112.84595 * 350.33765 * 16 15 3 26 26 H 1.09000 * 113.61459 * 334.56395 * 17 16 15 27 27 H 1.08997 * 113.61084 * 105.47352 * 17 16 15 28 28 H 1.09000 * 113.53550 * 270.81306 * 18 17 16 29 29 H 1.08993 * 113.74142 * 139.94627 * 18 17 16 30 30 H 1.08996 * 113.61900 * 254.52696 * 19 16 15 31 31 H 1.09006 * 113.61815 * 25.43762 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 6 2.4276 1.9463 -1.1271 5 6 2.2477 1.5780 -2.4793 6 1 1.7707 0.6407 -2.7247 7 6 2.6856 2.4262 -3.4978 8 7 3.2645 3.5647 -3.1996 9 14 2.4472 1.9398 -5.2855 10 1 0.9987 1.7652 -5.5621 11 1 2.9948 3.0033 -6.1653 12 1 3.1590 0.6636 -5.5504 13 6 3.0289 3.1380 -0.6475 14 7 3.0124 3.1063 0.6546 15 7 2.4078 1.9207 1.0843 16 6 2.2038 1.5221 2.4793 17 6 1.7987 2.6859 3.3994 18 6 2.7301 2.0673 4.4578 19 6 3.5066 1.4336 3.2914 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 3.5691 4.1539 -3.9074 24 1 3.4342 3.9325 -1.2566 25 1 1.5662 0.6438 2.5795 26 1 2.1304 3.6608 3.0422 27 1 0.7460 2.6731 3.6818 28 1 2.2357 1.3386 5.1002 29 1 3.3072 2.8028 5.0181 30 1 3.8307 0.4115 3.4869 31 1 4.3061 2.0656 2.9047 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260804374.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:46 Heat of formation + Delta-G solvation = 36.587868 kcal Electronic energy + Delta-G solvation = -15267.599403 eV Core-core repulsion = 12744.125290 eV Total energy + Delta-G solvation = -2523.474113 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.54931 -39.16723 -38.34684 -35.40757 -31.92988 -30.65479 -28.17024 -26.62588 -26.55640 -25.39523 -22.08052 -21.40059 -20.23021 -19.13713 -18.07773 -16.91868 -16.61165 -16.15491 -15.97035 -15.65032 -14.81844 -14.68755 -13.99757 -13.67796 -13.46420 -13.10482 -12.97779 -12.93137 -12.75517 -12.36437 -12.15500 -11.99975 -11.51617 -11.45226 -11.23115 -11.11872 -10.46294 -9.56284 -9.16311 -8.42435 -6.04028 1.03003 1.43483 1.50960 1.55291 1.97512 2.31140 2.31508 3.15331 3.51453 3.58188 3.68795 3.82068 3.94616 4.36338 4.48465 4.58313 4.60496 4.71331 4.81934 4.83606 4.97909 5.03184 5.10228 5.18834 5.37746 5.51793 5.59994 5.96746 6.07839 6.54818 6.82014 7.08915 7.28487 7.46726 8.57302 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042439 B = 0.008354 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.619099 B = 3350.875400 C = 3819.251409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.056 3.944 4 C -0.052 4.052 5 C -0.460 4.460 6 H 0.063 0.937 7 C 0.024 3.976 8 N -0.859 5.859 9 Si 0.990 3.010 10 H -0.264 1.264 11 H -0.268 1.268 12 H -0.267 1.267 13 C 0.005 3.995 14 N -0.314 5.314 15 N -0.375 5.375 16 C 0.121 3.879 17 C -0.139 4.139 18 C -0.113 4.113 19 C -0.145 4.145 20 H 0.119 0.881 21 H 0.030 0.970 22 H 0.041 0.959 23 H 0.283 0.717 24 H 0.196 0.804 25 H 0.118 0.882 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 -3.353 8.629 9.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C -0.107 4.107 4 C -0.063 4.063 5 C -0.493 4.493 6 H 0.081 0.919 7 C -0.185 4.185 8 N -0.490 5.490 9 Si 0.812 3.188 10 H -0.189 1.189 11 H -0.192 1.192 12 H -0.192 1.192 13 C -0.180 4.180 14 N -0.141 5.141 15 N -0.172 5.172 16 C 0.018 3.982 17 C -0.177 4.177 18 C -0.150 4.150 19 C -0.184 4.184 20 H 0.137 0.863 21 H 0.049 0.951 22 H 0.060 0.940 23 H 0.094 0.906 24 H 0.212 0.788 25 H 0.136 0.864 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.289 -2.867 9.619 10.562 hybrid contribution -0.465 -0.360 -1.726 1.823 sum -3.753 -3.226 7.893 9.317 Atomic orbital electron populations 1.23215 0.80296 1.03754 0.99839 1.85960 1.20309 1.22460 1.93315 1.19238 1.12605 0.91440 0.87411 1.18391 1.01431 0.93402 0.93054 1.18836 1.35889 1.04705 0.89918 0.91874 1.26552 0.92706 0.93884 1.05338 1.69562 1.33415 1.10156 1.35907 0.85125 0.79284 0.78612 0.75790 1.18883 1.19191 1.19156 1.24744 1.02497 1.00657 0.90132 1.76423 1.21125 1.01926 1.14589 1.48265 1.49413 1.14596 1.04923 1.23047 0.99887 0.99304 0.75916 1.23295 1.01033 0.97609 0.95809 1.22688 0.97044 1.00352 0.94940 1.23323 0.96307 1.01975 0.96752 0.86329 0.95122 0.94018 0.90608 0.78753 0.86417 0.90915 0.89845 0.87218 0.89581 0.90131 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.88 11.13 113.37 1.26 2.14 16 2 O -0.31 -14.51 10.34 -85.69 -0.89 -15.39 16 3 C 0.06 2.95 7.08 84.71 0.60 3.55 16 4 C -0.05 -3.02 5.95 -21.15 -0.13 -3.14 16 5 C -0.46 -26.44 9.38 23.35 0.22 -26.22 16 6 H 0.06 3.57 7.84 -2.91 -0.02 3.55 16 7 C 0.02 1.27 5.49 85.12 0.47 1.73 16 8 N -0.86 -46.25 10.32 21.78 0.22 -46.03 16 9 Si 0.99 40.68 29.56 68.60 2.03 42.71 16 10 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 11 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 12 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 13 C 0.00 0.26 10.90 85.82 0.94 1.19 16 14 N -0.31 -16.29 11.87 -55.99 -0.66 -16.95 16 15 N -0.38 -17.82 3.67 -433.89 -1.59 -19.41 16 16 C 0.12 4.28 4.63 45.52 0.21 4.50 16 17 C -0.14 -4.08 7.78 31.18 0.24 -3.83 16 18 C -0.11 -2.52 8.09 31.18 0.25 -2.27 16 19 C -0.14 -4.39 7.88 31.12 0.25 -4.15 16 20 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 21 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 23 H 0.28 13.87 8.30 -92.70 -0.77 13.10 16 24 H 0.20 11.18 5.76 -2.91 -0.02 11.16 16 25 H 0.12 3.81 8.00 -2.39 -0.02 3.79 16 26 H 0.07 2.51 7.72 -2.39 -0.02 2.49 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -65.71 268.12 4.54 -61.18 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 1.12 Total: 20.40 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 4.31 Total: -26.50 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -2.03 Total: -82.39 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.89 Total: -15.39 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -65.71 4.54 -61.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260804374.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.763 kcal (2) G-P(sol) polarization free energy of solvation -65.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds