Wall clock time and date at job start Mon Mar 30 2020 03:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48559 * 111.00066 * 2 1 4 4 C 1.54387 * 104.58955 * 159.04379 * 3 2 1 5 5 C 1.54259 * 105.06271 * 336.15098 * 4 3 2 6 6 C 1.48560 * 111.00239 * 115.42523 * 2 1 3 7 7 H 1.08995 * 110.40669 * 319.73353 * 6 2 1 8 8 C 1.50706 * 110.41054 * 82.17753 * 6 2 1 9 9 N 1.29912 * 125.07492 * 219.89666 * 8 6 2 10 10 C 1.36278 * 108.61374 * 179.87529 * 9 8 6 11 11 C 1.41259 * 126.67485 * 180.12622 * 10 9 8 12 12 H 1.08005 * 120.00491 * 0.27383 * 11 10 9 13 13 C 1.39738 * 120.00023 * 180.26645 * 11 10 9 14 14 N 1.30987 * 119.99707 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99769 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47379 * 60.00587 * 15 13 11 17 17 H 1.48501 * 109.46830 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47523 * 300.00155 * 15 13 11 19 19 C 1.38787 * 106.64835 * 0.37913 * 10 9 8 20 20 O 1.34053 * 125.08168 * 40.19730 * 8 6 2 21 21 H 1.08999 * 109.47164 * 59.86869 * 1 2 3 22 22 H 1.08991 * 109.47486 * 179.87271 * 1 2 3 23 23 H 1.09009 * 109.46450 * 299.87269 * 1 2 3 24 24 H 1.08999 * 110.40971 * 40.26912 * 3 2 1 25 25 H 1.08999 * 110.41180 * 277.82119 * 3 2 1 26 26 H 1.09000 * 110.32138 * 95.04641 * 4 3 2 27 27 H 1.08999 * 110.32243 * 217.24909 * 4 3 2 28 28 H 1.08991 * 110.32316 * 118.89554 * 5 4 3 29 29 H 1.09006 * 110.31751 * 241.10803 * 5 4 3 30 30 H 0.97004 * 120.00172 * 179.97438 * 14 13 11 31 31 H 1.08002 * 126.75058 * 179.77827 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4434 1.2499 0.5344 5 6 3.4434 -0.0542 1.3583 6 6 2.0015 -0.5954 1.2526 7 1 1.4100 -0.2714 2.1088 8 6 2.0104 -2.0995 1.1572 9 7 1.6942 -2.9105 2.1215 10 6 1.8157 -4.1908 1.6705 11 6 1.5636 -5.3713 2.4042 12 1 1.2346 -5.3091 3.4311 13 6 1.7396 -6.6196 1.8014 14 7 2.1388 -6.6950 0.5562 15 14 1.4055 -8.1806 2.7715 16 1 -0.0114 -8.1935 3.2159 17 1 1.6657 -9.3629 1.9115 18 1 2.2970 -8.2264 3.9583 19 6 2.2409 -4.1092 0.3519 20 8 2.3512 -2.8003 0.0664 21 1 -0.3633 0.5159 -0.8888 22 1 -0.3634 -1.0276 -0.0023 23 1 -0.3632 0.5119 0.8912 24 1 1.4100 2.0211 0.6603 25 1 2.0079 1.7916 -1.0121 26 1 4.1483 1.1747 -0.2936 27 1 3.6939 2.0993 1.1699 28 1 4.1483 -0.7695 0.9348 29 1 3.6938 0.1552 2.3983 30 1 2.2614 -7.5616 0.1377 31 1 2.4433 -4.9350 -0.3141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260816036.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:31 Heat of formation + Delta-G solvation = -10.103209 kcal Electronic energy + Delta-G solvation = -15102.159135 eV Core-core repulsion = 12576.660344 eV Total energy + Delta-G solvation = -2525.498790 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.16222 -39.82933 -36.08106 -34.58106 -33.18587 -31.72597 -29.24124 -27.17684 -26.52287 -23.35713 -22.48178 -21.82776 -21.16790 -19.10545 -17.53681 -17.11953 -16.73442 -16.61916 -16.00364 -15.49088 -14.83058 -14.73733 -14.31882 -14.01586 -13.42533 -13.16823 -13.03895 -12.75585 -12.64273 -12.40566 -12.25949 -12.08806 -11.90624 -11.88188 -11.47394 -10.99631 -10.96847 -9.57030 -9.21054 -8.64525 -6.50935 1.14282 1.38513 1.41297 1.53206 2.15888 2.21541 2.52254 2.85980 3.32676 3.62774 3.67805 3.92311 4.04812 4.29778 4.40350 4.45549 4.57730 4.71515 4.90037 4.91734 4.94515 5.02866 5.13642 5.24889 5.34479 5.36141 5.63258 5.76763 5.84636 6.01938 6.32327 6.72088 6.85709 7.57155 8.41054 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.061361 B = 0.006555 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.204020 B = 4270.747988 C = 4318.098628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.531 5.531 3 C 0.034 3.966 4 C -0.112 4.112 5 C -0.116 4.116 6 C 0.165 3.835 7 H 0.088 0.912 8 C 0.170 3.830 9 N -0.549 5.549 10 C 0.109 3.891 11 C -0.462 4.462 12 H 0.071 0.929 13 C 0.019 3.981 14 N -0.854 5.854 15 Si 1.010 2.990 16 H -0.262 1.262 17 H -0.262 1.262 18 H -0.261 1.261 19 C -0.230 4.230 20 O -0.221 6.221 21 H 0.095 0.905 22 H 0.034 0.966 23 H 0.045 0.955 24 H 0.066 0.934 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.290 0.710 31 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.369 12.226 -0.869 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.093 4.093 4 C -0.150 4.150 5 C -0.155 4.155 6 C 0.055 3.945 7 H 0.106 0.894 8 C -0.038 4.038 9 N -0.286 5.286 10 C -0.006 4.006 11 C -0.495 4.495 12 H 0.090 0.910 13 C -0.191 4.191 14 N -0.485 5.485 15 Si 0.830 3.170 16 H -0.186 1.186 17 H -0.186 1.186 18 H -0.186 1.186 19 C -0.299 4.299 20 O -0.108 6.108 21 H 0.114 0.886 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.118 0.882 26 H 0.096 0.904 27 H 0.122 0.878 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.406 12.004 -0.993 12.051 hybrid contribution -0.328 -1.001 0.282 1.090 sum 0.078 11.003 -0.710 11.026 Atomic orbital electron populations 1.22479 0.87024 1.01021 1.02437 1.65149 1.09406 1.17534 1.33580 1.23267 0.95449 0.87638 1.02949 1.22320 0.96621 0.96189 0.99823 1.22368 0.92809 0.98137 1.02229 1.20946 0.99089 0.81093 0.93342 0.89386 1.26113 0.99801 0.96566 0.81290 1.70691 1.24342 1.02095 1.31491 1.19784 0.98454 0.90284 0.92098 1.18792 1.42546 0.89105 0.99054 0.91030 1.26749 0.92385 1.03880 0.96063 1.69349 1.37463 1.28286 1.13386 0.84829 0.79596 0.74469 0.78119 1.18627 1.18553 1.18559 1.26459 1.21551 0.80910 1.01009 1.84121 1.68336 1.19124 1.39231 0.88640 0.94736 0.93619 0.91543 0.88169 0.90392 0.87849 0.93008 0.89015 0.89873 0.76280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.41 127.69 1.20 1.75 16 2 N -0.53 -16.91 5.33 -887.01 -4.72 -21.63 16 3 C 0.03 0.72 6.49 86.45 0.56 1.28 16 4 C -0.11 -2.29 7.00 31.49 0.22 -2.07 16 5 C -0.12 -3.44 6.54 31.49 0.21 -3.23 16 6 C 0.16 6.01 2.82 44.32 0.13 6.14 16 7 H 0.09 3.04 7.90 -2.39 -0.02 3.03 16 8 C 0.17 8.56 6.82 88.39 0.60 9.16 16 9 N -0.55 -31.58 11.36 -296.18 -3.36 -34.94 16 10 C 0.11 6.74 6.89 39.33 0.27 7.01 16 11 C -0.46 -27.83 9.49 23.38 0.22 -27.61 16 12 H 0.07 4.22 7.84 -2.91 -0.02 4.20 16 13 C 0.02 1.02 5.49 85.18 0.47 1.49 16 14 N -0.85 -46.93 10.34 21.80 0.23 -46.70 16 15 Si 1.01 40.94 29.56 68.60 2.03 42.97 16 16 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 17 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 19 C -0.23 -13.84 11.18 67.95 0.76 -13.08 16 20 O -0.22 -12.30 10.72 -1.25 -0.01 -12.31 16 21 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 22 H 0.03 1.24 8.05 -2.39 -0.02 1.22 16 23 H 0.05 1.15 7.97 -2.38 -0.02 1.13 16 24 H 0.07 1.15 7.97 -2.39 -0.02 1.13 16 25 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.79 7.85 -2.39 -0.02 1.77 16 29 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 31 H 0.22 13.30 5.78 -2.91 -0.02 13.28 16 Total: -1.00 -71.36 263.14 -0.09 -71.45 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 1.12 Total: 20.34 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 4.64 Total: -19.17 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -7.86 Total: -103.28 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.01 Total: -12.31 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -71.36 -0.09 -71.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260816036.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.344 kcal (2) G-P(sol) polarization free energy of solvation -71.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds