Wall clock time and date at job start Mon Mar 30 2020 03:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48537 * 110.99782 * 2 1 4 4 C 1.54949 * 103.22658 * 200.28083 * 3 2 1 5 5 C 1.54591 * 102.91932 * 37.41130 * 4 3 2 6 6 H 1.08997 * 110.39275 * 97.00605 * 5 4 3 7 7 C 1.50703 * 110.30591 * 219.12737 * 5 4 3 8 8 N 1.29916 * 125.07883 * 237.46666 * 7 5 4 9 9 C 1.36277 * 108.61635 * 180.11014 * 8 7 5 10 10 C 1.41264 * 126.67463 * 179.88825 * 9 8 7 11 11 H 1.07997 * 119.99887 * 10.13662 * 10 9 8 12 12 C 1.39729 * 119.99621 * 190.14329 * 10 9 8 13 13 N 1.30994 * 120.00488 * 9.66881 * 12 10 9 14 14 Si 1.86803 * 119.99653 * 189.38903 * 12 10 9 15 15 H 1.48499 * 109.46859 * 84.99076 * 14 12 10 16 16 H 1.48502 * 109.47243 * 204.98972 * 14 12 10 17 17 H 1.48499 * 109.47216 * 324.99194 * 14 12 10 18 18 C 1.38793 * 106.64953 * 359.62331 * 9 8 7 19 19 O 1.34052 * 125.08110 * 57.14881 * 7 5 4 20 20 C 1.47904 * 111.00472 * 242.60314 * 2 1 3 21 21 H 1.09009 * 109.46826 * 177.40061 * 1 2 3 22 22 H 1.08994 * 109.47533 * 297.39498 * 1 2 3 23 23 H 1.08996 * 109.47481 * 57.39781 * 1 2 3 24 24 H 1.09007 * 110.66422 * 318.70955 * 3 2 1 25 25 H 1.08997 * 110.66820 * 81.67756 * 3 2 1 26 26 H 1.08993 * 110.71776 * 279.05561 * 4 3 2 27 27 H 1.08998 * 110.72330 * 155.77039 * 4 3 2 28 28 H 0.96999 * 120.00134 * 179.72575 * 13 12 10 29 29 H 1.07994 * 126.74946 * 180.22909 * 18 9 8 30 30 H 1.09010 * 109.91237 * 26.48711 * 20 2 1 31 31 H 1.09000 * 110.08006 * 265.29324 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 -0.5228 5 6 3.2982 0.1054 -1.5930 6 1 3.2142 0.5471 -2.5860 7 6 4.4717 -0.8386 -1.5390 8 7 5.2678 -1.0978 -2.5325 9 6 6.2060 -1.9941 -2.1157 10 6 7.2553 -2.5382 -2.8892 11 1 7.4736 -2.1312 -3.8655 12 6 8.0108 -3.6029 -2.3912 13 7 7.6328 -4.2200 -1.2993 14 14 9.5556 -4.1513 -3.2868 15 1 10.7039 -3.3176 -2.8491 16 1 9.8305 -5.5765 -2.9726 17 1 9.3607 -3.9959 -4.7508 18 6 5.9335 -2.2636 -0.7818 19 8 4.8537 -1.5317 -0.4571 20 6 1.9991 -0.6354 -1.2259 21 1 -0.3633 -1.0267 -0.0466 22 1 -0.3634 0.4728 0.9123 23 1 -0.3634 0.5537 -0.8657 24 1 1.4236 2.0205 -0.6730 25 1 2.0012 1.7988 1.0091 26 1 4.1114 0.8837 0.2787 27 1 3.8122 2.1353 -0.9717 28 1 8.1551 -4.9616 -0.9558 29 1 6.4813 -2.9303 -0.1323 30 1 1.2758 -0.5403 -2.0359 31 1 2.2116 -1.6881 -1.0399 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260837660.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:45 Heat of formation + Delta-G solvation = 13.220565 kcal Electronic energy + Delta-G solvation = -14942.386212 eV Core-core repulsion = 12417.898816 eV Total energy + Delta-G solvation = -2524.487395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.19734 -38.60695 -33.99132 -32.89642 -32.09728 -29.37004 -27.77919 -25.80612 -24.79773 -21.60340 -21.07489 -20.42906 -19.33184 -17.06905 -15.94589 -15.55254 -15.19890 -14.77754 -14.40764 -14.11420 -13.46399 -13.18746 -12.89848 -12.28122 -11.91268 -11.60788 -11.48808 -11.40218 -11.23348 -11.17589 -10.89801 -10.57171 -10.34372 -9.94772 -9.83338 -8.96110 -8.82983 -8.35252 -7.10746 -6.62326 -4.30024 3.03875 3.16002 3.20237 3.20950 4.04570 4.08654 4.17627 4.30641 4.87733 4.91930 5.05222 5.32888 5.38786 5.41419 5.51061 5.55005 5.73671 5.82419 5.94373 6.00280 6.09466 6.30551 6.39285 6.94054 7.06837 7.11702 7.37271 7.43188 7.72235 7.92077 8.48287 8.82437 8.99768 9.64844 10.43778 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.073344 B = 0.006038 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.673287 B = 4635.886179 C = 4735.312554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.520 5.520 3 C 0.035 3.965 4 C -0.117 4.117 5 C 0.010 3.990 6 H 0.103 0.897 7 C 0.140 3.860 8 N -0.513 5.513 9 C 0.140 3.860 10 C -0.425 4.425 11 H 0.078 0.922 12 C 0.063 3.937 13 N -0.833 5.833 14 Si 0.926 3.074 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.190 4.190 19 O -0.220 6.220 20 C 0.044 3.956 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.026 0.974 24 H 0.044 0.956 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.277 0.723 29 H 0.219 0.781 30 H 0.049 0.951 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.988 7.007 2.406 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.244 5.244 3 C -0.092 4.092 4 C -0.156 4.156 5 C -0.010 4.010 6 H 0.121 0.879 7 C -0.066 4.066 8 N -0.249 5.249 9 C 0.024 3.976 10 C -0.459 4.459 11 H 0.096 0.904 12 C -0.149 4.149 13 N -0.464 5.464 14 Si 0.751 3.249 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.260 4.260 19 O -0.107 6.107 20 C -0.085 4.085 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.044 0.956 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.235 0.765 30 H 0.067 0.933 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.870 6.803 2.465 11.447 hybrid contribution 0.580 -0.385 -0.460 0.834 sum -8.291 6.417 2.005 10.674 Atomic orbital electron populations 1.22507 0.88151 1.01986 1.00555 1.64736 1.07696 1.14820 1.37167 1.23262 0.95079 0.89873 1.01027 1.22594 0.96619 0.97875 0.98507 1.20156 0.88320 0.91928 1.00552 0.87916 1.24915 0.99524 0.99362 0.82805 1.70739 1.06420 1.18256 1.29475 1.19346 0.93896 0.93073 0.91244 1.18451 1.10782 1.13692 1.02966 0.90419 1.25665 0.98868 0.95086 0.95246 1.69539 1.36958 1.19146 1.20777 0.86042 0.80956 0.77709 0.80199 1.19588 1.20523 1.18953 1.26063 0.93613 1.07107 0.99175 1.84082 1.40771 1.47429 1.38461 1.22947 0.94513 1.00457 0.90544 0.91362 0.91421 0.95564 0.93752 0.89938 0.89841 0.90515 0.91184 0.76527 0.93263 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.40 60.06 0.56 0.75 16 2 N -0.52 -7.49 5.55 -238.71 -1.33 -8.82 16 3 C 0.04 0.44 6.56 -1.89 -0.01 0.43 16 4 C -0.12 -1.76 6.60 -24.87 -0.16 -1.92 16 5 C 0.01 0.19 3.52 -90.42 -0.32 -0.13 16 6 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 7 C 0.14 3.34 6.50 -13.09 -0.09 3.25 16 8 N -0.51 -14.03 11.36 -8.64 -0.10 -14.13 16 9 C 0.14 4.12 6.84 -84.54 -0.58 3.54 16 10 C -0.42 -12.30 9.47 -37.88 -0.36 -12.66 16 11 H 0.08 2.20 7.86 -52.49 -0.41 1.79 16 12 C 0.06 1.69 5.44 -17.35 -0.09 1.60 16 13 N -0.83 -22.52 10.66 55.54 0.59 -21.93 16 14 Si 0.93 20.00 29.57 -169.99 -5.03 14.97 16 15 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 C -0.19 -5.35 11.12 30.94 0.34 -5.00 16 19 O -0.22 -5.72 10.57 6.04 0.06 -5.65 16 20 C 0.04 0.70 6.35 -2.76 -0.02 0.68 16 21 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.03 0.26 8.00 -51.93 -0.42 -0.15 16 24 H 0.04 0.48 7.96 -51.93 -0.41 0.07 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.42 7.73 -51.93 -0.40 1.02 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 29 H 0.22 6.11 6.16 -52.49 -0.32 5.79 16 30 H 0.05 0.68 7.73 -51.92 -0.40 0.28 16 31 H 0.09 1.60 7.68 -51.93 -0.40 1.20 16 LS Contribution 262.96 15.07 3.96 3.96 Total: -1.00 -31.15 262.96 -6.57 -37.72 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.01 Total: 3.33 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -0.72 Total: -9.45 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.83 Total: -44.88 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: 0.06 Total: -5.65 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.15 -6.57 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260837660.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.938 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds