Wall clock time and date at job start Mon Mar 30 2020 03:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48537 * 110.99782 * 2 1 4 4 C 1.54949 * 103.22658 * 200.28083 * 3 2 1 5 5 C 1.54591 * 102.91932 * 37.41130 * 4 3 2 6 6 H 1.08997 * 110.39275 * 97.00605 * 5 4 3 7 7 C 1.50703 * 110.30591 * 219.12737 * 5 4 3 8 8 N 1.29916 * 125.07883 * 237.46666 * 7 5 4 9 9 C 1.36277 * 108.61635 * 180.11014 * 8 7 5 10 10 C 1.41264 * 126.67463 * 179.88825 * 9 8 7 11 11 H 1.07997 * 119.99887 * 10.13662 * 10 9 8 12 12 C 1.39729 * 119.99621 * 190.14329 * 10 9 8 13 13 N 1.30994 * 120.00488 * 9.66881 * 12 10 9 14 14 Si 1.86803 * 119.99653 * 189.38903 * 12 10 9 15 15 H 1.48499 * 109.46859 * 84.99076 * 14 12 10 16 16 H 1.48502 * 109.47243 * 204.98972 * 14 12 10 17 17 H 1.48499 * 109.47216 * 324.99194 * 14 12 10 18 18 C 1.38793 * 106.64953 * 359.62331 * 9 8 7 19 19 O 1.34052 * 125.08110 * 57.14881 * 7 5 4 20 20 C 1.47904 * 111.00472 * 242.60314 * 2 1 3 21 21 H 1.09009 * 109.46826 * 177.40061 * 1 2 3 22 22 H 1.08994 * 109.47533 * 297.39498 * 1 2 3 23 23 H 1.08996 * 109.47481 * 57.39781 * 1 2 3 24 24 H 1.09007 * 110.66422 * 318.70955 * 3 2 1 25 25 H 1.08997 * 110.66820 * 81.67756 * 3 2 1 26 26 H 1.08993 * 110.71776 * 279.05561 * 4 3 2 27 27 H 1.08998 * 110.72330 * 155.77039 * 4 3 2 28 28 H 0.96999 * 120.00134 * 179.72575 * 13 12 10 29 29 H 1.07994 * 126.74946 * 180.22909 * 18 9 8 30 30 H 1.09010 * 109.91237 * 26.48711 * 20 2 1 31 31 H 1.09000 * 110.08006 * 265.29324 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 -0.5228 5 6 3.2982 0.1054 -1.5930 6 1 3.2142 0.5471 -2.5860 7 6 4.4717 -0.8386 -1.5390 8 7 5.2678 -1.0978 -2.5325 9 6 6.2060 -1.9941 -2.1157 10 6 7.2553 -2.5382 -2.8892 11 1 7.4736 -2.1312 -3.8655 12 6 8.0108 -3.6029 -2.3912 13 7 7.6328 -4.2200 -1.2993 14 14 9.5556 -4.1513 -3.2868 15 1 10.7039 -3.3176 -2.8491 16 1 9.8305 -5.5765 -2.9726 17 1 9.3607 -3.9959 -4.7508 18 6 5.9335 -2.2636 -0.7818 19 8 4.8537 -1.5317 -0.4571 20 6 1.9991 -0.6354 -1.2259 21 1 -0.3633 -1.0267 -0.0466 22 1 -0.3634 0.4728 0.9123 23 1 -0.3634 0.5537 -0.8657 24 1 1.4236 2.0205 -0.6730 25 1 2.0012 1.7988 1.0091 26 1 4.1114 0.8837 0.2787 27 1 3.8122 2.1353 -0.9717 28 1 8.1551 -4.9616 -0.9558 29 1 6.4813 -2.9303 -0.1323 30 1 1.2758 -0.5403 -2.0359 31 1 2.2116 -1.6881 -1.0399 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260837660.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:45 Heat of formation + Delta-G solvation = -11.268211 kcal Electronic energy + Delta-G solvation = -14943.448125 eV Core-core repulsion = 12417.898816 eV Total energy + Delta-G solvation = -2525.549308 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.22173 -39.79927 -36.08273 -34.71195 -33.63546 -30.81383 -29.51267 -27.43364 -26.31532 -23.24080 -22.50196 -22.11896 -21.11007 -19.00720 -17.57144 -17.11633 -16.77623 -16.65591 -16.10099 -15.28719 -14.96948 -14.86153 -14.16819 -13.95961 -13.37036 -13.22366 -13.01019 -12.75101 -12.57650 -12.46666 -12.34410 -12.09422 -11.92080 -11.83614 -11.76726 -11.00981 -10.93031 -9.37666 -9.22212 -8.66343 -6.48604 1.11242 1.38767 1.41144 1.54449 2.15228 2.22875 2.46007 3.07645 3.29813 3.43135 3.66893 3.72003 4.24370 4.30516 4.34085 4.54159 4.59554 4.69174 4.83042 4.88720 4.99094 5.02888 5.05454 5.16989 5.35157 5.38320 5.59675 5.80157 5.87354 6.11058 6.29998 6.71217 6.85144 7.54225 8.41238 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.073344 B = 0.006038 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.673287 B = 4635.886179 C = 4735.312554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.544 5.544 3 C 0.045 3.955 4 C -0.114 4.114 5 C 0.003 3.997 6 H 0.120 0.880 7 C 0.167 3.833 8 N -0.548 5.548 9 C 0.114 3.886 10 C -0.466 4.466 11 H 0.071 0.929 12 C 0.023 3.977 13 N -0.852 5.852 14 Si 1.006 2.994 15 H -0.260 1.260 16 H -0.263 1.263 17 H -0.262 1.262 18 C -0.225 4.225 19 O -0.227 6.227 20 C 0.052 3.948 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.289 0.711 29 H 0.211 0.789 30 H 0.075 0.925 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.636 7.928 2.104 12.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.269 5.269 3 C -0.082 4.082 4 C -0.153 4.153 5 C -0.017 4.017 6 H 0.138 0.862 7 C -0.041 4.041 8 N -0.284 5.284 9 C -0.001 4.001 10 C -0.500 4.500 11 H 0.090 0.910 12 C -0.187 4.187 13 N -0.483 5.483 14 Si 0.826 3.174 15 H -0.185 1.185 16 H -0.188 1.188 17 H -0.186 1.186 18 C -0.295 4.295 19 O -0.115 6.115 20 C -0.077 4.077 21 H 0.084 0.916 22 H 0.103 0.897 23 H 0.061 0.939 24 H 0.091 0.909 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.227 0.773 30 H 0.093 0.907 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.531 7.722 2.178 12.459 hybrid contribution 0.676 -0.636 -0.332 0.986 sum -8.855 7.086 1.846 11.490 Atomic orbital electron populations 1.22576 0.85944 1.02468 1.02172 1.64691 1.09907 1.16061 1.36200 1.23289 0.93085 0.89314 1.02532 1.22602 0.98364 0.97496 0.96841 1.20605 0.86627 0.91743 1.02677 0.86233 1.26268 0.99186 0.97387 0.81223 1.70752 1.07453 1.19325 1.30850 1.19778 0.94641 0.93723 0.91961 1.18766 1.12355 1.15521 1.03316 0.91027 1.26732 1.01846 0.94162 0.95973 1.69600 1.38061 1.19101 1.21521 0.84857 0.75915 0.77936 0.78692 1.18485 1.18771 1.18575 1.25801 0.95366 1.09235 0.99050 1.84066 1.40439 1.47803 1.39206 1.22766 0.94151 0.98450 0.92336 0.91585 0.89737 0.93879 0.90946 0.88357 0.92499 0.88192 0.89994 0.77321 0.90681 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.40 127.69 1.20 1.51 16 2 N -0.54 -14.40 5.55 -909.13 -5.05 -19.45 16 3 C 0.04 0.97 6.56 86.65 0.57 1.54 16 4 C -0.11 -3.22 6.60 31.80 0.21 -3.01 16 5 C 0.00 0.12 3.52 -10.66 -0.04 0.08 16 6 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 7 C 0.17 8.13 6.50 88.39 0.57 8.70 16 8 N -0.55 -30.94 11.36 -296.17 -3.36 -34.31 16 9 C 0.11 6.97 6.84 39.33 0.27 7.24 16 10 C -0.47 -27.91 9.47 23.37 0.22 -27.68 16 11 H 0.07 4.21 7.86 -2.91 -0.02 4.18 16 12 C 0.02 1.26 5.44 85.18 0.46 1.72 16 13 N -0.85 -46.86 10.66 21.79 0.23 -46.63 16 14 Si 1.01 40.73 29.57 68.60 2.03 42.76 16 15 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 16 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 17 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 18 C -0.23 -13.34 11.12 67.95 0.76 -12.59 16 19 O -0.23 -12.26 10.57 -1.30 -0.01 -12.27 16 20 C 0.05 1.59 6.35 86.44 0.55 2.14 16 21 H 0.07 1.27 8.14 -2.38 -0.02 1.26 16 22 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 23 H 0.04 0.69 8.00 -2.39 -0.02 0.67 16 24 H 0.07 1.22 7.96 -2.38 -0.02 1.20 16 25 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.06 1.91 7.73 -2.39 -0.02 1.89 16 27 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.29 14.23 8.30 -92.71 -0.77 13.46 16 29 H 0.21 12.45 6.16 -2.91 -0.02 12.43 16 30 H 0.08 1.90 7.73 -2.38 -0.02 1.88 16 31 H 0.05 1.95 7.68 -2.39 -0.02 1.94 16 Total: -1.00 -70.16 262.96 -0.27 -70.44 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 1.12 Total: 19.81 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 4.77 Total: -20.35 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -8.18 Total: -100.38 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.01 Total: -12.27 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -70.16 -0.27 -70.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260837660.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.167 kcal (2) G-P(sol) polarization free energy of solvation -70.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds