Wall clock time and date at job start Mon Mar 30 2020 02:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47126 * 2 1 4 4 O 1.42905 * 109.46618 * 120.00157 * 2 1 3 5 5 C 1.35920 * 116.99562 * 155.15606 * 4 2 1 6 6 C 1.39096 * 120.85974 * 5.48217 * 5 4 2 7 7 N 1.32284 * 119.03645 * 180.02562 * 6 5 4 8 8 C 1.31796 * 120.87800 * 359.97438 * 7 6 5 9 9 C 1.50692 * 119.05473 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47095 * 90.00449 * 9 8 7 11 11 H 1.07998 * 119.99800 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00398 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99603 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00061 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47253 * 60.00272 * 14 12 10 16 16 H 1.48501 * 109.47024 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47117 * 300.00081 * 14 12 10 18 18 N 1.31778 * 121.88501 * 0.28018 * 8 7 6 19 19 C 1.32298 * 120.88037 * 359.44218 * 18 8 7 20 20 H 1.08997 * 109.47086 * 300.00355 * 1 2 3 21 21 H 1.08997 * 109.47245 * 60.00122 * 1 2 3 22 22 H 1.09002 * 109.47493 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47086 * 239.99645 * 2 1 3 24 24 H 1.08999 * 109.46713 * 60.00034 * 3 2 1 25 25 H 1.09003 * 109.46621 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47006 * 299.99560 * 3 2 1 27 27 H 1.07999 * 120.47976 * 0.02562 * 6 5 4 28 28 H 1.09002 * 109.47133 * 209.99823 * 9 8 7 29 29 H 1.09000 * 109.47418 * 330.00586 * 9 8 7 30 30 H 0.96997 * 120.00130 * 179.97438 * 13 12 10 31 31 H 1.07994 * 120.48456 * 180.29594 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 3.2480 -1.2221 1.0990 6 6 4.0537 -1.0278 -0.0181 7 7 5.2561 -1.5787 -0.0462 8 6 5.6924 -2.3022 0.9654 9 6 7.0687 -2.9111 0.8896 10 6 8.0765 -1.9478 1.4620 11 1 7.7526 -0.9902 1.8421 12 6 9.4118 -2.2889 1.5003 13 7 9.8061 -3.4552 1.0379 14 14 10.6608 -1.0951 2.2104 15 1 10.3225 -0.8099 3.6281 16 1 12.0170 -1.6956 2.1369 17 1 10.6356 0.1689 1.4316 18 7 4.9573 -2.5132 2.0385 19 6 3.7460 -1.9919 2.1450 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 3.7028 -0.4357 -0.8504 28 1 7.0875 -3.8389 1.4616 29 1 7.3167 -3.1206 -0.1509 30 1 10.7455 -3.6951 1.0645 31 1 3.1509 -2.1650 3.0294 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260839079.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:47 Heat of formation + Delta-G solvation = -2.248819 kcal Electronic energy + Delta-G solvation = -14580.973594 eV Core-core repulsion = 12055.815396 eV Total energy + Delta-G solvation = -2525.158198 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.79505 -38.68329 -33.77503 -33.20434 -32.93092 -30.90588 -27.83706 -27.36058 -24.48111 -23.94107 -21.94588 -20.93973 -18.16051 -17.28269 -16.44735 -15.94402 -15.56676 -14.58916 -14.42272 -14.23605 -13.66745 -13.24749 -12.71609 -12.52448 -12.46761 -12.07211 -11.95127 -11.39004 -11.33859 -10.95717 -10.88570 -10.62891 -10.56130 -10.32059 -9.76062 -9.46056 -8.55271 -8.40141 -8.04188 -6.03299 -4.05800 1.52564 1.58547 3.12499 3.35584 3.38561 3.42242 4.31991 4.51485 4.53666 4.65534 4.68502 4.80003 4.84728 4.90972 5.29277 5.30217 5.33854 5.39213 5.50091 5.55308 5.83991 5.95818 5.99196 6.09339 6.89329 7.22689 7.49221 7.51673 7.70276 7.90453 8.25512 8.88018 8.93590 9.55807 11.07573 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.051318 B = 0.005802 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.486681 B = 4824.766116 C = 5018.739059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 C -0.182 4.182 4 O -0.304 6.304 5 C -0.012 4.012 6 C 0.065 3.935 7 N -0.485 5.485 8 C 0.327 3.673 9 C 0.082 3.918 10 C -0.506 4.506 11 H 0.053 0.947 12 C 0.062 3.938 13 N -0.893 5.893 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.276 1.276 18 N -0.481 5.481 19 C 0.121 3.879 20 H 0.066 0.934 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.159 0.841 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.776 6.750 -2.377 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.017 3.983 3 C -0.239 4.239 4 O -0.217 6.217 5 C -0.062 4.062 6 C -0.103 4.103 7 N -0.199 5.199 8 C 0.062 3.938 9 C 0.044 3.956 10 C -0.545 4.545 11 H 0.071 0.929 12 C -0.140 4.140 13 N -0.531 5.531 14 Si 0.728 3.272 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.202 1.202 18 N -0.195 5.195 19 C -0.047 4.047 20 H 0.085 0.915 21 H 0.094 0.906 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.176 0.824 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.854 6.226 -2.305 17.188 hybrid contribution -0.156 1.222 0.206 1.249 sum -16.010 7.448 -2.098 17.782 Atomic orbital electron populations 1.21830 0.92426 1.03119 1.02954 1.22420 0.95435 0.92713 0.87685 1.22395 1.02428 0.95975 1.03093 1.86091 1.28504 1.68671 1.38440 1.20761 0.87332 0.99502 0.98586 1.23395 0.90947 0.99133 0.96873 1.68340 1.12713 1.08601 1.30272 1.24351 0.97348 0.89282 0.82816 1.18197 0.81755 0.96242 0.99446 1.20769 0.91191 1.01844 1.40717 0.92900 1.24923 0.98247 0.95477 0.95374 1.69931 1.16458 1.20653 1.46096 0.86522 0.80077 0.80992 0.79638 1.20155 1.21082 1.20204 1.68514 1.03975 1.21239 1.25796 1.22742 0.92496 0.92467 0.97023 0.91468 0.90589 0.91661 0.91040 0.91377 0.91733 0.90961 0.82380 0.93353 0.93430 0.92638 0.81800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.56 37.16 0.36 -0.78 16 2 C 0.07 0.76 2.85 -26.73 -0.08 0.69 16 3 C -0.18 -1.71 9.19 37.16 0.34 -1.37 16 4 O -0.30 -4.20 9.82 -19.49 -0.19 -4.39 16 5 C -0.01 -0.20 6.64 -38.95 -0.26 -0.46 16 6 C 0.06 1.13 9.52 -17.04 -0.16 0.97 16 7 N -0.48 -10.72 10.33 -10.62 -0.11 -10.83 16 8 C 0.33 7.85 6.83 -157.21 -1.07 6.78 16 9 C 0.08 2.24 5.41 -29.04 -0.16 2.08 16 10 C -0.51 -14.74 9.09 -34.44 -0.31 -15.06 16 11 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 12 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 14 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 N -0.48 -10.68 10.33 -10.62 -0.11 -10.79 16 19 C 0.12 2.18 11.27 -17.03 -0.19 1.99 16 20 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.71 6.38 -51.93 -0.33 0.38 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.71 6.94 -51.93 -0.36 0.35 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.16 2.20 5.61 -52.49 -0.29 1.91 16 28 H 0.05 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -31.93 270.46 -6.16 -38.09 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -3.91 Total: -3.78 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.63 Total: -3.48 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.52 Total: -47.51 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.19 Total: -4.39 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.93 -6.16 -38.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260839079.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.844 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds