Wall clock time and date at job start Mon Mar 30 2020 02:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47126 * 2 1 4 4 O 1.42905 * 109.46618 * 120.00157 * 2 1 3 5 5 C 1.35920 * 116.99562 * 155.15606 * 4 2 1 6 6 C 1.39096 * 120.85974 * 5.48217 * 5 4 2 7 7 N 1.32284 * 119.03645 * 180.02562 * 6 5 4 8 8 C 1.31796 * 120.87800 * 359.97438 * 7 6 5 9 9 C 1.50692 * 119.05473 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47095 * 90.00449 * 9 8 7 11 11 H 1.07998 * 119.99800 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00398 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99603 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00061 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47253 * 60.00272 * 14 12 10 16 16 H 1.48501 * 109.47024 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47117 * 300.00081 * 14 12 10 18 18 N 1.31778 * 121.88501 * 0.28018 * 8 7 6 19 19 C 1.32298 * 120.88037 * 359.44218 * 18 8 7 20 20 H 1.08997 * 109.47086 * 300.00355 * 1 2 3 21 21 H 1.08997 * 109.47245 * 60.00122 * 1 2 3 22 22 H 1.09002 * 109.47493 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47086 * 239.99645 * 2 1 3 24 24 H 1.08999 * 109.46713 * 60.00034 * 3 2 1 25 25 H 1.09003 * 109.46621 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47006 * 299.99560 * 3 2 1 27 27 H 1.07999 * 120.47976 * 0.02562 * 6 5 4 28 28 H 1.09002 * 109.47133 * 209.99823 * 9 8 7 29 29 H 1.09000 * 109.47418 * 330.00586 * 9 8 7 30 30 H 0.96997 * 120.00130 * 179.97438 * 13 12 10 31 31 H 1.07994 * 120.48456 * 180.29594 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 3.2480 -1.2221 1.0990 6 6 4.0537 -1.0278 -0.0181 7 7 5.2561 -1.5787 -0.0462 8 6 5.6924 -2.3022 0.9654 9 6 7.0687 -2.9111 0.8896 10 6 8.0765 -1.9478 1.4620 11 1 7.7526 -0.9902 1.8421 12 6 9.4118 -2.2889 1.5003 13 7 9.8061 -3.4552 1.0379 14 14 10.6608 -1.0951 2.2104 15 1 10.3225 -0.8099 3.6281 16 1 12.0170 -1.6956 2.1369 17 1 10.6356 0.1689 1.4316 18 7 4.9573 -2.5132 2.0385 19 6 3.7460 -1.9919 2.1450 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 3.7028 -0.4357 -0.8504 28 1 7.0875 -3.8389 1.4616 29 1 7.3167 -3.1206 -0.1509 30 1 10.7455 -3.6951 1.0645 31 1 3.1509 -2.1650 3.0294 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260839079.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:47 Heat of formation + Delta-G solvation = -23.700533 kcal Electronic energy + Delta-G solvation = -14581.903810 eV Core-core repulsion = 12055.815396 eV Total energy + Delta-G solvation = -2526.088414 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.25244 -39.91664 -35.52728 -34.81003 -34.21561 -32.62011 -29.54452 -28.18369 -25.99049 -25.76306 -23.46865 -22.16004 -19.31357 -18.74565 -18.62582 -17.53617 -16.70764 -16.40265 -15.67582 -15.48709 -14.94637 -14.43429 -14.38048 -13.90588 -13.47444 -13.43976 -13.12023 -13.01124 -12.81079 -12.60221 -12.41680 -12.03688 -11.96258 -11.79979 -11.67065 -11.51711 -10.62322 -10.11323 -9.49601 -8.22801 -6.35151 0.01069 0.10290 1.39815 1.43663 1.51827 2.01346 2.38605 2.82101 3.08048 3.18447 3.27414 3.41557 3.76451 3.89312 4.02504 4.13751 4.38047 4.62292 4.70882 4.79799 4.81997 4.89567 5.17696 5.22015 5.28216 5.35441 5.37108 5.66357 5.91590 6.06493 6.29841 6.69972 7.25655 7.31208 8.88166 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.051318 B = 0.005802 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.486681 B = 4824.766116 C = 5018.739059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.060 3.940 3 C -0.180 4.180 4 O -0.301 6.301 5 C 0.018 3.982 6 C 0.061 3.939 7 N -0.509 5.509 8 C 0.297 3.703 9 C 0.092 3.908 10 C -0.527 4.527 11 H 0.044 0.956 12 C 0.011 3.989 13 N -0.925 5.925 14 Si 0.971 3.029 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.269 1.269 18 N -0.505 5.505 19 C 0.112 3.888 20 H 0.069 0.931 21 H 0.102 0.898 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.099 0.901 27 H 0.195 0.805 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.269 0.731 31 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.525 8.696 -2.352 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.005 3.995 3 C -0.237 4.237 4 O -0.214 6.214 5 C -0.032 4.032 6 C -0.106 4.106 7 N -0.224 5.224 8 C 0.031 3.969 9 C 0.054 3.946 10 C -0.566 4.566 11 H 0.063 0.937 12 C -0.188 4.188 13 N -0.564 5.564 14 Si 0.794 3.206 15 H -0.194 1.194 16 H -0.198 1.198 17 H -0.194 1.194 18 N -0.220 5.220 19 C -0.056 4.056 20 H 0.088 0.912 21 H 0.120 0.880 22 H 0.082 0.918 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.118 0.882 27 H 0.212 0.788 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -17.641 8.183 -2.286 19.580 hybrid contribution 0.132 0.688 0.153 0.717 sum -17.509 8.871 -2.133 19.743 Atomic orbital electron populations 1.21863 0.90072 1.03552 1.04383 1.22888 0.97219 0.92920 0.86501 1.22405 1.01206 0.95516 1.04591 1.86136 1.26544 1.68158 1.40513 1.20665 0.87978 0.97389 0.97216 1.23913 0.89578 0.98688 0.98390 1.68193 1.14986 1.09180 1.30002 1.23515 0.96856 0.91833 0.84669 1.17790 0.84348 0.95332 0.97161 1.21013 0.92363 1.01912 1.41331 0.93724 1.25854 1.00219 0.97318 0.95427 1.70047 1.17194 1.22372 1.46774 0.85426 0.77522 0.78666 0.78961 1.19436 1.19829 1.19404 1.68361 1.05751 1.22415 1.25426 1.23261 0.91419 0.92207 0.98675 0.91242 0.87985 0.91763 0.90299 0.91265 0.93554 0.88224 0.78830 0.95901 0.95939 0.92197 0.78342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.56 71.98 0.69 -0.96 16 2 C 0.06 1.03 2.85 30.59 0.09 1.12 16 3 C -0.18 -2.78 9.19 71.98 0.66 -2.12 16 4 O -0.30 -7.39 9.82 -92.65 -0.91 -8.30 16 5 C 0.02 0.55 6.64 22.68 0.15 0.70 16 6 C 0.06 2.07 9.52 84.83 0.81 2.87 16 7 N -0.51 -22.78 10.33 -187.50 -1.94 -24.72 16 8 C 0.30 14.77 6.83 138.75 0.95 15.72 16 9 C 0.09 5.32 5.41 29.10 0.16 5.48 16 10 C -0.53 -31.81 9.09 25.60 0.23 -31.58 16 11 H 0.04 2.69 7.74 -2.91 -0.02 2.67 16 12 C 0.01 0.63 5.46 84.66 0.46 1.10 16 13 N -0.92 -56.57 13.29 21.45 0.28 -56.28 16 14 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 15 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 18 N -0.51 -22.78 10.33 -187.50 -1.94 -24.72 16 19 C 0.11 3.89 11.27 84.83 0.96 4.84 16 20 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 21 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.08 1.27 6.38 -2.39 -0.02 1.26 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 0.90 6.94 -2.39 -0.02 0.88 16 26 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.20 4.90 5.61 -2.91 -0.02 4.89 16 28 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.20 5.28 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -71.20 270.46 3.80 -67.40 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: 1.12 Total: 1.96 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 5.15 Total: -2.83 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -3.59 Total: -105.71 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.91 Total: -8.30 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -71.20 3.80 -67.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260839079.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.696 kcal (2) G-P(sol) polarization free energy of solvation -71.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds