Wall clock time and date at job start Mon Mar 30 2020 02:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47637 * 2 1 4 4 C 1.53005 * 109.46878 * 120.00001 * 2 1 3 5 5 C 1.50703 * 109.47083 * 239.99453 * 2 1 3 6 6 N 1.31804 * 119.04012 * 239.73767 * 5 2 1 7 7 C 1.32264 * 120.89242 * 179.75969 * 6 5 2 8 8 C 1.39242 * 119.01227 * 0.50369 * 7 6 5 9 9 O 1.35769 * 120.86585 * 179.77475 * 8 7 6 10 10 C 1.34825 * 116.99793 * 174.51688 * 9 8 7 11 11 H 1.07997 * 120.00207 * 5.05378 * 10 9 8 12 12 C 1.38658 * 120.00247 * 185.05363 * 10 9 8 13 13 N 1.31557 * 119.99727 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00559 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47231 * 89.99679 * 14 12 10 16 16 H 1.48494 * 109.47559 * 210.00134 * 14 12 10 17 17 H 1.48503 * 109.46917 * 330.00115 * 14 12 10 18 18 C 1.39241 * 118.26228 * 359.74512 * 8 7 6 19 19 N 1.31805 * 119.03533 * 60.00178 * 5 2 1 20 20 H 1.09000 * 109.46825 * 59.99713 * 1 2 3 21 21 H 1.09002 * 109.46832 * 300.00972 * 1 2 3 22 22 H 1.08995 * 109.47526 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47709 * 59.99788 * 3 2 1 24 24 H 1.09004 * 109.47258 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.46981 * 299.99548 * 3 2 1 26 26 H 1.08995 * 109.47370 * 59.99503 * 4 2 1 27 27 H 1.09004 * 109.46850 * 179.97438 * 4 2 1 28 28 H 1.09005 * 109.47087 * 299.99728 * 4 2 1 29 29 H 1.07999 * 120.48950 * 180.23026 * 7 6 5 30 30 H 0.97005 * 119.99963 * 180.02562 * 13 12 10 31 31 H 1.07994 * 120.49256 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0323 -0.7105 -1.2304 6 7 2.7931 -1.7773 -1.0874 7 6 3.2502 -2.4317 -2.1420 8 6 2.9250 -1.9717 -3.4154 9 8 3.3776 -2.6118 -4.5239 10 6 2.9243 -2.1694 -5.7141 11 1 2.2979 -1.2909 -5.7607 12 6 3.2623 -2.8423 -6.8784 13 7 4.0249 -3.9128 -6.8216 14 14 2.6349 -2.2290 -8.5275 15 1 3.6070 -1.2625 -9.0986 16 1 2.4759 -3.3777 -9.4550 17 1 1.3229 -1.5590 -8.3398 18 6 2.1231 -0.8384 -3.5221 19 7 1.7023 -0.2439 -2.4181 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5140 0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.6769 1.9563 0.8899 24 1 3.1301 1.4423 -0.0005 25 1 1.6769 1.9562 -0.8900 26 1 1.6766 -1.7489 1.2494 27 1 3.1300 -0.7217 1.2491 28 1 1.6766 -0.2074 2.1393 29 1 3.8701 -3.3073 -2.0173 30 1 4.2617 -4.3834 -7.6361 31 1 1.8492 -0.4503 -4.4920 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260840716.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:43 Heat of formation + Delta-G solvation = 3.401371 kcal Electronic energy + Delta-G solvation = -14869.407080 eV Core-core repulsion = 12344.493892 eV Total energy + Delta-G solvation = -2524.913188 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.36377 -37.87233 -35.82979 -32.83769 -32.53796 -29.22639 -27.02482 -26.98473 -25.80563 -23.47025 -22.98776 -19.49131 -18.48833 -17.25520 -16.22596 -15.57208 -14.67920 -14.54253 -13.75118 -13.74082 -13.66869 -13.27453 -12.66536 -12.61418 -11.93342 -11.88084 -11.83727 -11.35515 -11.33872 -11.16665 -10.63103 -10.62369 -10.56203 -10.41524 -9.95635 -9.92613 -9.11243 -8.25855 -7.65391 -6.68240 -4.26711 1.92324 1.95936 3.02413 3.03557 3.08606 3.78727 4.49836 4.55045 4.87489 4.91839 5.02246 5.35960 5.40637 5.43984 5.52098 5.86454 5.90226 5.95554 6.08974 6.09238 6.12695 6.18975 6.37670 6.42520 6.59862 6.61746 6.77827 7.02002 7.29342 7.71563 7.87909 8.75181 8.99805 9.35678 10.47778 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.054749 B = 0.006459 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.301487 B = 4333.740380 C = 4651.270144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.016 3.984 3 C -0.132 4.132 4 C -0.124 4.124 5 C 0.207 3.793 6 N -0.472 5.472 7 C 0.067 3.933 8 C 0.050 3.950 9 O -0.156 6.156 10 C -0.397 4.397 11 H 0.094 0.906 12 C 0.044 3.956 13 N -0.851 5.851 14 Si 0.946 3.054 15 H -0.270 1.270 16 H -0.275 1.275 17 H -0.265 1.265 18 C 0.024 3.976 19 N -0.472 5.472 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.160 0.840 30 H 0.275 0.725 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 5.957 7.845 10.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.014 3.986 3 C -0.191 4.191 4 C -0.182 4.182 5 C -0.059 4.059 6 N -0.185 5.185 7 C -0.103 4.103 8 C -0.009 4.009 9 O -0.055 6.055 10 C -0.473 4.473 11 H 0.112 0.888 12 C -0.162 4.162 13 N -0.483 5.483 14 Si 0.769 3.231 15 H -0.196 1.196 16 H -0.200 1.200 17 H -0.189 1.189 18 C -0.146 4.146 19 N -0.185 5.185 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.177 0.823 30 H 0.085 0.915 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.137 6.036 8.418 11.154 hybrid contribution 0.088 -0.237 -1.812 1.830 sum -4.049 5.799 6.606 9.678 Atomic orbital electron populations 1.21807 0.93849 1.01642 1.01760 1.18996 0.95235 0.94212 0.90108 1.21806 1.00747 0.94738 1.01764 1.21656 1.01525 1.00139 0.94841 1.22159 0.98317 0.93325 0.92144 1.67913 1.09677 1.07746 1.33200 1.22263 1.02017 1.00632 0.85371 1.21114 0.95245 0.94140 0.90443 1.83983 1.58384 1.51478 1.11694 1.21364 1.32574 1.12681 0.80667 0.88819 1.25372 0.96159 0.95312 0.99379 1.70031 1.32094 1.16368 1.29829 0.85632 0.79374 0.78551 0.79503 1.19566 1.19992 1.18882 1.23097 0.99407 0.94660 0.97393 1.67716 1.21016 1.31334 0.98480 0.91839 0.92643 0.93097 0.92631 0.93116 0.91847 0.92294 0.92290 0.93305 0.82313 0.91512 0.81790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.37 37.16 0.31 -1.55 16 2 C 0.02 0.26 0.92 -155.66 -0.14 0.11 16 3 C -0.13 -1.85 8.37 37.15 0.31 -1.54 16 4 C -0.12 -1.73 7.67 37.16 0.28 -1.45 16 5 C 0.21 4.07 6.25 -157.17 -0.98 3.09 16 6 N -0.47 -9.67 8.99 -10.57 -0.10 -9.76 16 7 C 0.07 1.45 11.28 -16.99 -0.19 1.26 16 8 C 0.05 1.18 6.69 -38.84 -0.26 0.92 16 9 O -0.16 -4.21 9.78 0.00 0.00 -4.21 16 10 C -0.40 -10.47 9.51 30.89 0.29 -10.18 16 11 H 0.09 2.27 5.29 -52.49 -0.28 1.99 16 12 C 0.04 1.15 5.49 -17.51 -0.10 1.06 16 13 N -0.85 -23.63 13.67 55.48 0.76 -22.87 16 14 Si 0.95 19.41 29.55 -169.99 -5.02 14.38 16 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 18 C 0.02 0.52 10.43 -16.99 -0.18 0.34 16 19 N -0.47 -9.87 9.79 -10.58 -0.10 -9.97 16 20 H 0.06 0.94 8.01 -51.93 -0.42 0.52 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.93 8.01 -51.93 -0.42 0.52 16 26 H 0.06 0.86 8.04 -51.93 -0.42 0.45 16 27 H 0.06 0.86 8.04 -51.93 -0.42 0.45 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.16 3.10 8.06 -52.49 -0.42 2.68 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.17 3.48 5.78 -52.49 -0.30 3.18 16 LS Contribution 268.32 15.07 4.04 4.04 Total: -1.00 -28.74 268.32 -4.99 -33.73 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.92 Total: 2.59 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -0.65 Total: -7.93 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.56 Total: -42.60 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: 0.00 Total: -4.21 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.74 -4.99 -33.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260840716.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.129 kcal (2) G-P(sol) polarization free energy of solvation -28.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds