Wall clock time and date at job start Mon Mar 30 2020 02:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47637 * 2 1 4 4 C 1.53005 * 109.46878 * 120.00001 * 2 1 3 5 5 C 1.50703 * 109.47083 * 239.99453 * 2 1 3 6 6 N 1.31804 * 119.04012 * 239.73767 * 5 2 1 7 7 C 1.32264 * 120.89242 * 179.75969 * 6 5 2 8 8 C 1.39242 * 119.01227 * 0.50369 * 7 6 5 9 9 O 1.35769 * 120.86585 * 179.77475 * 8 7 6 10 10 C 1.34825 * 116.99793 * 174.51688 * 9 8 7 11 11 H 1.07997 * 120.00207 * 5.05378 * 10 9 8 12 12 C 1.38658 * 120.00247 * 185.05363 * 10 9 8 13 13 N 1.31557 * 119.99727 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00559 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47231 * 89.99679 * 14 12 10 16 16 H 1.48494 * 109.47559 * 210.00134 * 14 12 10 17 17 H 1.48503 * 109.46917 * 330.00115 * 14 12 10 18 18 C 1.39241 * 118.26228 * 359.74512 * 8 7 6 19 19 N 1.31805 * 119.03533 * 60.00178 * 5 2 1 20 20 H 1.09000 * 109.46825 * 59.99713 * 1 2 3 21 21 H 1.09002 * 109.46832 * 300.00972 * 1 2 3 22 22 H 1.08995 * 109.47526 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47709 * 59.99788 * 3 2 1 24 24 H 1.09004 * 109.47258 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.46981 * 299.99548 * 3 2 1 26 26 H 1.08995 * 109.47370 * 59.99503 * 4 2 1 27 27 H 1.09004 * 109.46850 * 179.97438 * 4 2 1 28 28 H 1.09005 * 109.47087 * 299.99728 * 4 2 1 29 29 H 1.07999 * 120.48950 * 180.23026 * 7 6 5 30 30 H 0.97005 * 119.99963 * 180.02562 * 13 12 10 31 31 H 1.07994 * 120.49256 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0323 -0.7105 -1.2304 6 7 2.7931 -1.7773 -1.0874 7 6 3.2502 -2.4317 -2.1420 8 6 2.9250 -1.9717 -3.4154 9 8 3.3776 -2.6118 -4.5239 10 6 2.9243 -2.1694 -5.7141 11 1 2.2979 -1.2909 -5.7607 12 6 3.2623 -2.8423 -6.8784 13 7 4.0249 -3.9128 -6.8216 14 14 2.6349 -2.2290 -8.5275 15 1 3.6070 -1.2625 -9.0986 16 1 2.4759 -3.3777 -9.4550 17 1 1.3229 -1.5590 -8.3398 18 6 2.1231 -0.8384 -3.5221 19 7 1.7023 -0.2439 -2.4181 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5140 0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.6769 1.9563 0.8899 24 1 3.1301 1.4423 -0.0005 25 1 1.6769 1.9562 -0.8900 26 1 1.6766 -1.7489 1.2494 27 1 3.1300 -0.7217 1.2491 28 1 1.6766 -0.2074 2.1393 29 1 3.8701 -3.3073 -2.0173 30 1 4.2617 -4.3834 -7.6361 31 1 1.8492 -0.4503 -4.4920 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260840716.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:42 Heat of formation + Delta-G solvation = -14.346603 kcal Electronic energy + Delta-G solvation = -14870.176689 eV Core-core repulsion = 12344.493892 eV Total energy + Delta-G solvation = -2525.682797 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.08489 -39.63374 -37.20952 -34.58529 -34.41909 -30.95478 -28.23165 -28.09771 -27.65537 -25.18600 -24.67588 -20.96730 -20.28382 -19.08212 -17.91868 -17.14886 -16.38334 -16.22158 -15.30409 -15.24075 -15.18905 -14.67927 -14.37034 -14.20173 -13.66135 -13.08120 -13.01151 -12.78775 -12.74487 -12.49864 -12.15823 -11.94559 -11.83059 -11.76156 -11.71260 -11.64548 -10.96195 -9.99511 -9.47374 -8.58544 -6.27461 0.14153 0.22595 1.36235 1.44624 1.53573 2.10619 2.74720 2.98964 3.06515 3.24773 3.33802 3.73524 4.08851 4.14435 4.14601 4.27625 4.61706 4.77309 4.84126 4.90216 4.95171 5.04406 5.07486 5.10713 5.18487 5.25702 5.46183 5.58927 5.62381 5.82430 6.12555 6.83819 7.26708 7.49253 8.62075 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.054749 B = 0.006459 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.301487 B = 4333.740380 C = 4651.270144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.008 3.992 3 C -0.128 4.128 4 C -0.119 4.119 5 C 0.218 3.782 6 N -0.474 5.474 7 C 0.072 3.928 8 C 0.026 3.974 9 O -0.199 6.199 10 C -0.422 4.422 11 H 0.107 0.893 12 C -0.011 4.011 13 N -0.906 5.906 14 Si 1.020 2.980 15 H -0.262 1.262 16 H -0.270 1.270 17 H -0.252 1.252 18 C 0.027 3.973 19 N -0.477 5.477 20 H 0.052 0.948 21 H 0.091 0.909 22 H 0.041 0.959 23 H 0.091 0.909 24 H 0.041 0.959 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.174 0.826 30 H 0.278 0.722 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.379 7.674 9.182 13.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.006 3.994 3 C -0.186 4.186 4 C -0.177 4.177 5 C -0.049 4.049 6 N -0.187 5.187 7 C -0.098 4.098 8 C -0.031 4.031 9 O -0.101 6.101 10 C -0.498 4.498 11 H 0.124 0.876 12 C -0.211 4.211 13 N -0.542 5.542 14 Si 0.839 3.161 15 H -0.186 1.186 16 H -0.195 1.195 17 H -0.175 1.175 18 C -0.141 4.141 19 N -0.191 5.191 20 H 0.071 0.929 21 H 0.109 0.891 22 H 0.060 0.940 23 H 0.109 0.891 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.191 0.809 30 H 0.087 0.913 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.441 7.775 9.796 13.639 hybrid contribution 0.432 -0.668 -1.895 2.056 sum -5.009 7.106 7.901 11.748 Atomic orbital electron populations 1.21787 0.92256 1.01506 1.03068 1.19355 0.96496 0.94950 0.88601 1.21786 1.00219 0.93527 1.03071 1.21638 1.00907 0.99838 0.95317 1.23328 0.95880 0.92290 0.93417 1.68106 1.10100 1.08144 1.32397 1.22634 1.01258 1.00831 0.85030 1.21442 0.96271 0.94840 0.90546 1.83975 1.60479 1.53160 1.12491 1.21857 1.33350 1.13518 0.81025 0.87601 1.26609 0.96048 0.95274 1.03170 1.70155 1.34548 1.18408 1.31063 0.84563 0.79273 0.78181 0.74131 1.18624 1.19478 1.17498 1.23278 0.98481 0.94040 0.98275 1.67878 1.21360 1.31320 0.98552 0.92879 0.89058 0.93964 0.89054 0.93949 0.92880 0.93285 0.93252 0.89810 0.80868 0.91267 0.81231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.37 71.98 0.60 -2.57 16 2 C 0.01 0.22 0.92 -52.93 -0.05 0.18 16 3 C -0.13 -3.15 8.37 71.98 0.60 -2.55 16 4 C -0.12 -2.94 7.67 71.98 0.55 -2.39 16 5 C 0.22 8.24 6.25 138.74 0.87 9.11 16 6 N -0.47 -18.94 8.99 -187.37 -1.69 -20.62 16 7 C 0.07 3.10 11.28 84.87 0.96 4.06 16 8 C 0.03 1.24 6.69 22.75 0.15 1.39 16 9 O -0.20 -11.14 9.78 -22.91 -0.22 -11.37 16 10 C -0.42 -22.88 9.51 67.92 0.65 -22.24 16 11 H 0.11 5.20 5.29 -2.91 -0.02 5.19 16 12 C -0.01 -0.57 5.49 84.83 0.47 -0.11 16 13 N -0.91 -52.19 13.67 21.61 0.30 -51.89 16 14 Si 1.02 40.00 29.55 68.60 2.03 42.03 16 15 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 16 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 17 H -0.25 -9.18 7.11 99.48 0.71 -8.48 16 18 C 0.03 1.22 10.43 84.87 0.89 2.10 16 19 N -0.48 -19.48 9.79 -187.37 -1.83 -21.31 16 20 H 0.05 1.42 8.01 -2.39 -0.02 1.41 16 21 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.05 1.42 8.01 -2.39 -0.02 1.40 16 26 H 0.05 1.30 8.04 -2.39 -0.02 1.28 16 27 H 0.05 1.31 8.04 -2.38 -0.02 1.29 16 28 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.17 6.82 8.06 -2.91 -0.02 6.80 16 30 H 0.28 14.63 8.31 -92.70 -0.77 13.86 16 31 H 0.17 7.23 5.78 -2.91 -0.02 7.21 16 Total: -1.00 -63.34 268.32 5.38 -57.96 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.12 Total: 18.22 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 5.68 Total: -13.01 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -3.22 Total: -93.83 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.22 Total: -11.37 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -63.34 5.38 -57.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260840716.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.609 kcal (2) G-P(sol) polarization free energy of solvation -63.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds