Wall clock time and date at job start Mon Mar 30 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.85681 * 2 1 4 4 C 1.54524 * 110.93402 * 236.28547 * 2 1 3 5 5 C 1.51101 * 105.07276 * 216.46512 * 4 2 1 6 6 O 1.34150 * 143.60139 * 196.41157 * 5 4 2 7 7 N 1.20995 * 111.52318 * 179.97438 * 6 5 4 8 8 C 1.30303 * 111.56756 * 0.37548 * 7 6 5 9 9 C 1.35037 * 110.11595 * 16.73955 * 5 4 2 10 10 C 1.50669 * 110.64790 * 359.97405 * 9 5 4 11 11 C 1.50700 * 110.43042 * 224.40672 * 10 9 5 12 12 H 1.07999 * 120.00512 * 120.59813 * 11 10 9 13 13 C 1.37884 * 119.99872 * 300.59742 * 11 10 9 14 14 N 1.31521 * 119.99507 * 354.48401 * 13 11 10 15 15 Si 1.86793 * 120.00133 * 174.48053 * 13 11 10 16 16 H 1.48501 * 109.47325 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47011 * 120.00097 * 15 13 11 18 18 H 1.48498 * 109.47205 * 240.00297 * 15 13 11 19 19 C 1.52998 * 110.34548 * 102.19094 * 10 9 5 20 20 N 1.46892 * 109.47188 * 308.32795 * 19 10 9 21 21 H 1.09003 * 109.46931 * 182.25992 * 1 2 3 22 22 H 1.08998 * 109.47087 * 302.26208 * 1 2 3 23 23 H 1.08995 * 109.46616 * 62.26029 * 1 2 3 24 24 H 1.08996 * 110.32138 * 97.56058 * 4 2 1 25 25 H 1.09002 * 110.40653 * 335.39949 * 4 2 1 26 26 H 1.08003 * 126.88831 * 179.76039 * 8 7 6 27 27 H 0.96998 * 119.99281 * 180.02562 * 14 13 11 28 28 H 1.08999 * 109.47212 * 68.32958 * 19 10 9 29 29 H 1.09009 * 109.46868 * 188.33245 * 19 10 9 30 30 H 1.00902 * 111.00203 * 63.27282 * 20 19 10 31 31 H 1.00895 * 111.00417 * 187.22677 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0185 0.0000 4 6 2.0821 -0.8011 -1.2005 5 6 3.3184 -1.4934 -0.6757 6 8 4.4411 -2.1269 -1.0472 7 7 5.0871 -2.4842 -0.0886 8 6 4.5041 -2.1585 1.0303 9 6 3.3140 -1.4914 0.6746 10 6 2.0823 -0.8014 1.2008 11 6 2.4425 0.1290 2.3303 12 1 2.2236 1.1837 2.2519 13 6 3.0517 -0.3662 3.4638 14 7 3.2203 -1.6627 3.6066 15 14 3.6377 0.8043 4.7964 16 1 3.3317 2.2016 4.3975 17 1 2.9434 0.4906 6.0710 18 1 5.1033 0.6512 4.9803 19 6 1.0542 -1.8328 1.6700 20 7 0.8244 -2.8156 0.6027 21 1 -0.3633 -1.0269 0.0405 22 1 -0.3633 0.5486 0.8690 23 1 -0.3632 0.4783 -0.9095 24 1 2.3430 -0.1278 -2.0170 25 1 1.3503 -1.5361 -1.5358 26 1 4.8610 -2.3592 2.0297 27 1 3.6485 -2.0111 4.4041 28 1 1.4292 -2.3417 2.5579 29 1 0.1171 -1.3294 1.9081 30 1 1.6666 -3.3334 0.4005 31 1 0.0662 -3.4373 0.8406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260920534.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:04 Heat of formation + Delta-G solvation = 80.494882 kcal Electronic energy + Delta-G solvation = -16173.694734 eV Core-core repulsion = 13652.124572 eV Total energy + Delta-G solvation = -2521.570162 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.78320 -38.28598 -32.99431 -32.42889 -31.96378 -30.26036 -28.09962 -25.86834 -24.03117 -22.54788 -21.13225 -19.72459 -18.26595 -16.86070 -16.44737 -15.59127 -14.90008 -14.70311 -14.06296 -13.70478 -13.02718 -12.70290 -12.08068 -11.93566 -11.48018 -11.36476 -11.20951 -11.03779 -10.80349 -10.52829 -10.46644 -9.92485 -9.87172 -9.49418 -9.12888 -8.96078 -8.56758 -7.94310 -7.44171 -6.13474 -4.22739 2.60601 3.20688 3.30619 3.33892 3.63103 3.75364 4.31928 5.11590 5.56214 5.62635 5.69547 5.86731 5.91446 6.13573 6.25206 6.43102 6.51125 6.59309 6.69370 6.77102 6.91307 6.96594 7.05838 7.22850 7.32477 7.47767 7.67849 7.84123 7.97551 8.28817 8.35707 8.80044 9.38388 9.43255 10.88108 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.025630 B = 0.014505 C = 0.011530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.201284 B = 1929.938498 C = 2427.760646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 H 0.067 0.933 4 C -0.003 4.003 5 C -0.118 4.118 6 O 0.084 5.916 7 N -0.405 5.405 8 C 0.032 3.968 9 C -0.123 4.123 10 C 0.144 3.856 11 C -0.504 4.504 12 H 0.062 0.938 13 C 0.068 3.932 14 N -0.882 5.882 15 Si 0.890 3.110 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.069 3.931 20 N -0.854 5.854 21 H 0.080 0.920 22 H 0.050 0.950 23 H 0.034 0.966 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.186 0.814 27 H 0.260 0.740 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.329 0.671 31 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 0.064 -4.716 6.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 H 0.086 0.914 4 C -0.042 4.042 5 C -0.182 4.182 6 O 0.022 5.978 7 N -0.114 5.114 8 C -0.145 4.145 9 C -0.128 4.128 10 C 0.143 3.857 11 C -0.543 4.543 12 H 0.080 0.920 13 C -0.134 4.134 14 N -0.520 5.520 15 Si 0.718 3.282 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.061 4.061 20 N -0.381 5.381 21 H 0.099 0.901 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.203 0.797 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.141 0.859 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.168 -0.048 -5.344 6.213 hybrid contribution 0.314 0.156 2.125 2.154 sum -2.854 0.108 -3.219 4.303 Atomic orbital electron populations 1.21848 0.95009 1.03136 0.99549 1.21973 0.95352 0.98030 0.93749 0.91438 1.20631 0.88504 0.96970 0.98048 1.25278 0.92452 1.03286 0.97161 1.84488 1.26720 1.56018 1.30589 1.74011 1.19199 1.22182 0.95981 1.24504 0.93667 0.98641 0.97662 1.22160 0.98148 0.99753 0.92700 1.17135 0.86094 0.90817 0.91688 1.21163 1.38834 0.94014 1.00252 0.91990 1.24948 0.95393 0.95056 0.97963 1.69903 1.43020 1.11226 1.27877 0.86563 0.78580 0.81476 0.81622 1.19695 1.21045 1.20995 1.21996 0.97688 0.93387 0.93045 1.59093 1.10492 1.21301 1.47236 0.90087 0.93124 0.94700 0.92444 0.88920 0.79728 0.92998 0.91705 0.92748 0.85917 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.96 37.16 0.30 -2.02 16 2 C -0.07 -1.40 3.04 -88.99 -0.27 -1.67 16 3 H 0.07 1.35 7.80 -51.93 -0.41 0.94 16 4 C 0.00 -0.06 5.68 -26.89 -0.15 -0.21 16 5 C -0.12 -2.50 7.84 -35.25 -0.28 -2.78 16 6 O 0.08 1.84 11.21 16.86 0.19 2.03 16 7 N -0.41 -9.35 12.08 30.34 0.37 -8.98 16 8 C 0.03 0.76 11.36 -17.16 -0.19 0.57 16 9 C -0.12 -2.86 3.99 -104.73 -0.42 -3.28 16 10 C 0.14 3.23 0.43 -156.00 -0.07 3.16 16 11 C -0.50 -12.68 7.99 -34.44 -0.28 -12.95 16 12 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 13 C 0.07 1.73 5.14 -17.81 -0.09 1.64 16 14 N -0.88 -22.48 8.87 55.43 0.49 -21.99 16 15 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 C 0.07 1.45 4.97 -3.83 -0.02 1.43 16 20 N -0.85 -15.30 6.55 -10.37 -0.07 -15.37 16 21 H 0.08 1.36 5.45 -51.93 -0.28 1.08 16 22 H 0.05 0.86 8.01 -51.93 -0.42 0.45 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.09 1.57 7.32 -51.93 -0.38 1.19 16 26 H 0.19 4.54 6.90 -52.48 -0.36 4.18 16 27 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 28 H 0.06 1.57 6.05 -51.93 -0.31 1.26 16 29 H 0.05 1.13 6.53 -51.92 -0.34 0.79 16 30 H 0.33 6.38 7.63 -39.29 -0.30 6.08 16 31 H 0.32 4.97 9.08 -39.29 -0.36 4.62 16 LS Contribution 244.98 15.07 3.69 3.69 Total: -1.00 -25.76 244.98 -5.36 -31.12 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -3.54 Total: 10.45 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -1.47 Total: -16.10 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.79 Total: -46.35 kcal Atomic # 8 Polarization: 1.84 SS G_CDS: 0.19 Total: 2.03 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -25.76 -5.36 -31.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260920534.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.613 kcal (2) G-P(sol) polarization free energy of solvation -25.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds