Wall clock time and date at job start Mon Mar 30 2020 02:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.82947 * 2 1 4 4 C 1.54525 * 110.96562 * 236.28855 * 2 1 3 5 5 C 1.51104 * 105.07076 * 267.19565 * 4 2 1 6 6 O 1.34137 * 143.60394 * 163.26084 * 5 4 2 7 7 N 1.21458 * 111.46220 * 179.75222 * 6 5 4 8 8 C 1.30304 * 111.55399 * 0.20259 * 7 6 5 9 9 C 1.35221 * 110.14377 * 343.16678 * 5 4 2 10 10 C 1.50675 * 110.54410 * 0.16713 * 9 5 4 11 11 C 1.50706 * 110.34245 * 135.47578 * 10 9 5 12 12 H 1.07998 * 119.99421 * 356.50906 * 11 10 9 13 13 C 1.37874 * 120.00213 * 176.50323 * 11 10 9 14 14 N 1.31520 * 119.99822 * 13.47203 * 13 11 10 15 15 Si 1.86794 * 119.99927 * 193.46275 * 13 11 10 16 16 H 1.48493 * 109.47562 * 270.00355 * 15 13 11 17 17 H 1.48503 * 109.46989 * 30.00661 * 15 13 11 18 18 H 1.48507 * 109.46809 * 150.00117 * 15 13 11 19 19 C 1.52998 * 110.34898 * 257.63258 * 10 9 5 20 20 N 1.46904 * 109.46992 * 296.80908 * 19 10 9 21 21 H 1.09002 * 109.46948 * 300.99972 * 1 2 3 22 22 H 1.08993 * 109.47328 * 61.00250 * 1 2 3 23 23 H 1.09006 * 109.46859 * 181.00252 * 1 2 3 24 24 H 1.08997 * 110.32206 * 26.08505 * 4 2 1 25 25 H 1.08996 * 110.32591 * 148.19275 * 4 2 1 26 26 H 1.08003 * 126.88806 * 179.81302 * 8 7 6 27 27 H 0.96997 * 119.99723 * 2.95627 * 14 13 11 28 28 H 1.08999 * 109.46649 * 56.80512 * 19 10 9 29 29 H 1.08991 * 109.47182 * 176.80723 * 19 10 9 30 30 H 1.00900 * 111.00145 * 181.22744 * 20 19 10 31 31 H 1.00907 * 110.99883 * 305.18245 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0829 -0.8008 -1.2003 5 6 2.2901 -2.2026 -0.6754 6 8 2.4787 -3.4777 -1.0467 7 7 2.5917 -4.2089 -0.0835 8 6 2.4933 -3.5467 1.0344 9 6 2.2915 -2.1980 0.6768 10 6 2.0823 -0.8010 1.2011 11 6 1.0832 -0.8089 2.3293 12 1 0.5918 -1.7290 2.6088 13 6 0.7968 0.3585 3.0047 14 7 1.1802 1.5153 2.5102 15 14 -0.1361 0.2970 4.6219 16 1 -1.5943 0.3853 4.3559 17 1 0.1637 -0.9801 5.3180 18 1 0.2810 1.4369 5.4775 19 6 3.4105 -0.2051 1.6721 20 7 3.9314 -0.9965 2.7948 21 1 -0.3633 0.5293 0.8809 22 1 -0.3633 0.4981 -0.8988 23 1 -0.3633 -1.0276 0.0180 24 1 1.3611 -0.8055 -2.0170 25 1 3.0294 -0.3765 -1.5349 26 1 2.5537 -3.9503 2.0344 27 1 1.6265 1.5509 1.6498 28 1 4.1278 -0.2225 0.8516 29 1 3.2528 0.8238 1.9951 30 1 4.7987 -0.6111 3.1372 31 1 3.2494 -1.0663 3.5352 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260920536.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:07 Heat of formation + Delta-G solvation = 75.331369 kcal Electronic energy + Delta-G solvation = -16120.320551 eV Core-core repulsion = 13598.526482 eV Total energy + Delta-G solvation = -2521.794069 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.02182 -38.53791 -33.62135 -32.70281 -32.04905 -29.79838 -27.63682 -26.21575 -24.45937 -22.58238 -21.13899 -20.00949 -18.98735 -17.31947 -16.76383 -15.75844 -14.67254 -14.22613 -14.02914 -13.75939 -13.24912 -12.89681 -12.59527 -12.23120 -11.93461 -11.56477 -11.05663 -10.93749 -10.79699 -10.59118 -10.25985 -10.18401 -9.95922 -9.74134 -9.40913 -8.85163 -8.33244 -7.99843 -7.68591 -6.41766 -4.16740 2.25786 3.24646 3.34825 3.38859 3.41510 3.53758 4.40368 5.11433 5.20514 5.36810 5.48508 5.69817 5.75385 5.83458 6.07296 6.21256 6.33336 6.43258 6.52115 6.55053 6.63329 6.70149 6.90876 7.02899 7.08781 7.26318 7.44308 8.04054 8.17143 8.32175 8.47019 8.74843 8.99648 9.46652 10.87153 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.031719 B = 0.012245 C = 0.011291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.550600 B = 2286.187523 C = 2479.152012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.081 4.081 3 H 0.077 0.923 4 C -0.019 4.019 5 C -0.106 4.106 6 O 0.088 5.912 7 N -0.389 5.389 8 C 0.026 3.974 9 C -0.132 4.132 10 C 0.127 3.873 11 C -0.573 4.573 12 H 0.051 0.949 13 C 0.028 3.972 14 N -0.907 5.907 15 Si 1.055 2.945 16 H -0.289 1.289 17 H -0.287 1.287 18 H -0.285 1.285 19 C 0.075 3.925 20 N -0.842 5.842 21 H 0.081 0.919 22 H 0.025 0.975 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.180 0.820 27 H 0.277 0.723 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.316 0.684 31 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 -1.208 -2.986 3.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.101 4.101 3 H 0.096 0.904 4 C -0.057 4.057 5 C -0.170 4.170 6 O 0.026 5.974 7 N -0.097 5.097 8 C -0.151 4.151 9 C -0.136 4.136 10 C 0.125 3.875 11 C -0.611 4.611 12 H 0.070 0.930 13 C -0.177 4.177 14 N -0.544 5.544 15 Si 0.884 3.116 16 H -0.215 1.215 17 H -0.213 1.213 18 H -0.211 1.211 19 C -0.056 4.056 20 N -0.371 5.371 21 H 0.100 0.900 22 H 0.044 0.956 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.198 0.802 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.126 0.874 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.221 -2.145 -2.594 3.580 hybrid contribution 0.405 0.426 -0.212 0.625 sum 1.626 -1.719 -2.806 3.671 Atomic orbital electron populations 1.21549 0.94075 1.01079 1.00583 1.22269 0.96971 0.97964 0.92859 0.90444 1.20840 1.01232 0.84093 0.99546 1.25235 1.06638 0.88257 0.96851 1.84626 1.68069 1.14313 1.30374 1.74149 1.22066 1.18002 0.95494 1.24043 1.01637 0.91493 0.97963 1.22021 1.01582 0.96609 0.93406 1.17390 0.93003 0.83925 0.93149 1.21656 1.25236 0.97133 1.17076 0.93025 1.25607 0.97280 0.92074 1.02772 1.70842 1.37108 1.25955 1.20510 0.83733 0.76331 0.75563 0.75960 1.21544 1.21332 1.21086 1.21740 0.95304 0.95861 0.92725 1.58744 1.08055 1.56672 1.13631 0.90050 0.95582 0.93798 0.90910 0.90409 0.80242 0.90919 0.94850 0.93936 0.87405 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.11 37.16 0.30 -2.07 16 2 C -0.08 -1.63 2.07 -89.00 -0.18 -1.81 16 3 H 0.08 1.57 6.48 -51.93 -0.34 1.23 16 4 C -0.02 -0.33 6.33 -26.88 -0.17 -0.50 16 5 C -0.11 -2.15 8.39 -35.18 -0.30 -2.45 16 6 O 0.09 1.82 11.23 16.77 0.19 2.01 16 7 N -0.39 -8.20 12.10 30.45 0.37 -7.84 16 8 C 0.03 0.54 12.18 -17.16 -0.21 0.33 16 9 C -0.13 -2.88 5.41 -104.67 -0.57 -3.44 16 10 C 0.13 2.78 0.25 -156.00 -0.04 2.74 16 11 C -0.57 -13.85 5.35 -34.44 -0.18 -14.03 16 12 H 0.05 1.33 7.80 -52.49 -0.41 0.92 16 13 C 0.03 0.68 4.00 -17.82 -0.07 0.61 16 14 N -0.91 -23.20 11.95 55.43 0.66 -22.54 16 15 Si 1.06 22.81 29.92 -169.99 -5.09 17.72 16 16 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.07 1.60 5.34 -3.82 -0.02 1.58 16 20 N -0.84 -16.81 9.32 -10.37 -0.10 -16.91 16 21 H 0.08 1.87 5.75 -51.93 -0.30 1.57 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.04 0.93 8.11 -51.93 -0.42 0.50 16 24 H 0.07 1.14 7.91 -51.93 -0.41 0.73 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.18 3.47 8.06 -52.48 -0.42 3.05 16 27 H 0.28 6.88 3.92 -40.82 -0.16 6.72 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.98 5.74 -51.93 -0.30 0.68 16 30 H 0.32 5.54 9.08 -39.29 -0.36 5.18 16 31 H 0.35 7.38 7.85 -39.29 -0.31 7.07 16 LS Contribution 248.37 15.07 3.74 3.74 Total: -1.00 -26.24 248.37 -5.15 -31.38 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -3.49 Total: 11.47 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.44 Total: -19.04 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.93 Total: -47.28 kcal Atomic # 8 Polarization: 1.82 SS G_CDS: 0.19 Total: 2.01 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.09 Total: 17.72 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -26.24 -5.15 -31.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260920536.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.714 kcal (2) G-P(sol) polarization free energy of solvation -26.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds