Wall clock time and date at job start Mon Mar 30 2020 03:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48532 * 110.99991 * 2 1 4 4 C 1.54939 * 103.22744 * 200.28109 * 3 2 1 5 5 C 1.54591 * 102.92212 * 37.41773 * 4 3 2 6 6 H 1.08997 * 110.39591 * 97.00116 * 5 4 3 7 7 C 1.50706 * 110.31067 * 219.12888 * 5 4 3 8 8 N 1.30800 * 125.15418 * 57.20298 * 7 5 4 9 9 C 1.33319 * 109.25503 * 179.97438 * 8 7 5 10 10 C 1.39425 * 107.08148 * 0.02562 * 9 8 7 11 11 C 1.39842 * 126.87040 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00094 * 180.02562 * 11 10 9 13 13 C 1.40174 * 120.00529 * 0.02618 * 11 10 9 14 14 N 1.30797 * 119.99693 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00199 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46938 * 90.00214 * 15 13 11 17 17 H 1.48493 * 109.47013 * 209.99919 * 15 13 11 18 18 H 1.48497 * 109.47380 * 330.00067 * 15 13 11 19 19 O 1.34012 * 125.15044 * 237.17003 * 7 5 4 20 20 C 1.47903 * 110.99623 * 242.60861 * 2 1 3 21 21 H 1.08996 * 109.47109 * 177.39592 * 1 2 3 22 22 H 1.08998 * 109.46956 * 297.39390 * 1 2 3 23 23 H 1.09005 * 109.47224 * 57.38942 * 1 2 3 24 24 H 1.09001 * 110.67328 * 318.72009 * 3 2 1 25 25 H 1.09003 * 110.66929 * 81.68037 * 3 2 1 26 26 H 1.08998 * 110.72208 * 279.05625 * 4 3 2 27 27 H 1.09000 * 110.72297 * 155.77260 * 4 3 2 28 28 H 1.08004 * 126.46185 * 180.26376 * 9 8 7 29 29 H 0.96991 * 120.00119 * 179.97438 * 14 13 11 30 30 H 1.08989 * 109.91965 * 26.48925 * 20 2 1 31 31 H 1.09002 * 110.07952 * 265.28710 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 -0.5228 5 6 3.2982 0.1055 -1.5932 6 1 3.2142 0.5472 -2.5861 7 6 4.4716 -0.8387 -1.5393 8 7 4.8450 -1.5166 -0.4848 9 6 5.9157 -2.2500 -0.7900 10 6 6.2160 -1.9991 -2.1282 11 6 7.2629 -2.5534 -2.8714 12 1 7.3940 -2.2787 -3.9077 13 6 8.1422 -3.4654 -2.2716 14 7 7.9837 -3.7977 -1.0165 15 14 9.5402 -4.2063 -3.2646 16 1 10.7443 -3.3457 -3.1426 17 1 9.8481 -5.5643 -2.7489 18 1 9.1396 -4.2977 -4.6916 19 8 5.2903 -1.1113 -2.5646 20 6 1.9989 -0.6353 -1.2260 21 1 -0.3633 -1.0266 -0.0467 22 1 -0.3633 0.4728 0.9124 23 1 -0.3634 0.5539 -0.8657 24 1 1.4237 2.0206 -0.6728 25 1 2.0014 1.7987 1.0091 26 1 4.1115 0.8836 0.2787 27 1 3.8122 2.1352 -0.9716 28 1 6.4478 -2.9160 -0.1269 29 1 8.5919 -4.4291 -0.6015 30 1 1.2758 -0.5401 -2.0359 31 1 2.2116 -1.6881 -1.0401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260933397.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:48 Heat of formation + Delta-G solvation = -13.417810 kcal Electronic energy + Delta-G solvation = -14943.695730 eV Core-core repulsion = 12418.053208 eV Total energy + Delta-G solvation = -2525.642522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.06050 -39.75877 -36.04013 -34.88108 -33.51189 -31.02838 -29.90060 -27.26697 -25.91560 -23.13017 -22.71440 -22.06709 -20.70051 -19.56904 -17.80436 -17.06293 -16.70415 -16.67291 -15.83053 -15.20266 -15.13695 -14.49130 -14.04635 -13.97791 -13.29733 -13.25610 -13.07593 -12.65933 -12.57459 -12.51116 -12.42526 -12.10259 -11.97262 -11.70160 -11.53099 -11.37539 -10.71733 -9.37713 -9.29710 -8.80673 -6.60894 1.02943 1.36718 1.55544 1.62210 2.10169 2.39652 2.62875 3.06480 3.11808 3.63313 3.80690 4.04115 4.18570 4.33955 4.37062 4.56437 4.60175 4.70504 4.87796 4.89790 4.99629 5.05059 5.12204 5.18587 5.27245 5.41924 5.56727 5.93882 6.15760 6.18093 6.32532 6.47925 6.64509 7.70531 8.17723 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.073786 B = 0.006011 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.386379 B = 4656.922734 C = 4727.291834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.543 5.543 3 C 0.046 3.954 4 C -0.110 4.110 5 C 0.019 3.981 6 H 0.102 0.898 7 C 0.038 3.962 8 N -0.465 5.465 9 C -0.212 4.212 10 C 0.111 3.889 11 C -0.455 4.455 12 H 0.091 0.909 13 C 0.026 3.974 14 N -0.814 5.814 15 Si 1.024 2.976 16 H -0.255 1.255 17 H -0.259 1.259 18 H -0.254 1.254 19 O -0.261 6.261 20 C 0.060 3.940 21 H 0.064 0.936 22 H 0.082 0.918 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.179 0.821 29 H 0.298 0.702 30 H 0.069 0.931 31 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.459 6.152 -1.616 9.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.268 5.268 3 C -0.081 4.081 4 C -0.148 4.148 5 C -0.001 4.001 6 H 0.120 0.880 7 C -0.163 4.163 8 N -0.193 5.193 9 C -0.356 4.356 10 C 0.059 3.941 11 C -0.484 4.484 12 H 0.109 0.891 13 C -0.189 4.189 14 N -0.440 5.440 15 Si 0.841 3.159 16 H -0.180 1.180 17 H -0.183 1.183 18 H -0.177 1.177 19 O -0.153 6.153 20 C -0.069 4.069 21 H 0.083 0.917 22 H 0.101 0.899 23 H 0.060 0.940 24 H 0.089 0.911 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.195 0.805 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.597 5.801 -0.399 9.567 hybrid contribution 0.771 -0.274 -1.426 1.644 sum -6.826 5.528 -1.825 8.971 Atomic orbital electron populations 1.22567 0.86171 1.02310 1.02013 1.64650 1.09595 1.15899 1.36609 1.23243 0.93332 0.89365 1.02155 1.22557 0.98023 0.97157 0.97095 1.20174 0.86875 0.91788 1.01295 0.87965 1.25629 1.00350 1.08213 0.82148 1.69519 1.12678 1.07862 1.29215 1.24015 1.01967 1.12969 0.96629 1.21199 0.89484 0.88906 0.94514 1.18864 1.08000 1.22583 0.98971 0.89117 1.27088 1.00987 0.94508 0.96335 1.69645 1.35098 1.26029 1.13278 0.84590 0.75200 0.77842 0.78271 1.17974 1.18278 1.17697 1.84308 1.37049 1.53054 1.40921 1.22717 0.93996 0.98447 0.91733 0.91703 0.89892 0.93965 0.91119 0.88852 0.92863 0.88810 0.80483 0.89041 0.91283 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.40 127.69 1.20 1.58 16 2 N -0.54 -16.38 5.55 -909.15 -5.05 -21.42 16 3 C 0.05 1.17 6.56 86.65 0.57 1.74 16 4 C -0.11 -3.55 6.60 31.80 0.21 -3.34 16 5 C 0.02 0.70 3.52 -10.66 -0.04 0.67 16 6 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 7 C 0.04 1.97 6.58 88.26 0.58 2.55 16 8 N -0.46 -26.69 10.96 -300.12 -3.29 -29.98 16 9 C -0.21 -13.04 10.89 84.75 0.92 -12.12 16 10 C 0.11 6.75 7.08 22.94 0.16 6.92 16 11 C -0.45 -25.56 9.45 23.13 0.22 -25.34 16 12 H 0.09 4.77 7.85 -2.91 -0.02 4.75 16 13 C 0.03 1.32 5.50 85.32 0.47 1.78 16 14 N -0.81 -42.99 10.32 21.87 0.23 -42.76 16 15 Si 1.02 37.00 29.56 68.60 2.03 39.03 16 16 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 17 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 18 H -0.25 -8.82 7.11 99.48 0.71 -8.12 16 19 O -0.26 -14.90 10.81 -11.77 -0.13 -15.03 16 20 C 0.06 2.04 6.35 86.45 0.55 2.59 16 21 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.04 0.77 8.00 -2.38 -0.02 0.75 16 24 H 0.07 1.40 7.96 -2.39 -0.02 1.38 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.05 2.10 7.66 -2.39 -0.02 2.08 16 27 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.18 11.18 5.76 -2.91 -0.02 11.16 16 29 H 0.30 13.83 8.29 -92.71 -0.77 13.06 16 30 H 0.07 1.93 7.73 -2.39 -0.02 1.92 16 31 H 0.05 2.05 7.66 -2.39 -0.02 2.03 16 Total: -1.00 -69.06 262.08 -0.25 -69.30 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 1.12 Total: 23.84 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 4.84 Total: -22.97 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -8.11 Total: -94.17 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.13 Total: -15.03 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -69.06 -0.25 -69.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933397.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.883 kcal (2) G-P(sol) polarization free energy of solvation -69.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds