Wall clock time and date at job start Mon Mar 30 2020 03:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48558 * 110.99835 * 2 1 4 4 C 1.54377 * 104.59355 * 200.96200 * 3 2 1 5 5 C 1.54258 * 105.06475 * 23.85328 * 4 3 2 6 6 H 1.09005 * 110.32739 * 241.00728 * 5 4 3 7 7 C 1.50696 * 110.32726 * 118.89390 * 5 4 3 8 8 N 1.30803 * 125.15428 * 299.98484 * 7 5 4 9 9 C 1.33332 * 109.25212 * 180.02562 * 8 7 5 10 10 C 1.39417 * 107.08135 * 0.24068 * 9 8 7 11 11 C 1.39854 * 126.87065 * 179.72401 * 10 9 8 12 12 H 1.07991 * 120.00059 * 180.02562 * 11 10 9 13 13 C 1.40171 * 119.99640 * 0.02562 * 11 10 9 14 14 N 1.30795 * 120.00203 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99753 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47054 * 60.00279 * 15 13 11 17 17 H 1.48494 * 109.46885 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47095 * 300.00138 * 15 13 11 19 19 O 1.34015 * 125.15467 * 120.00109 * 7 5 4 20 20 C 1.48558 * 110.99806 * 244.58152 * 2 1 3 21 21 H 1.08995 * 109.46691 * 59.87368 * 1 2 3 22 22 H 1.08997 * 109.46763 * 179.87028 * 1 2 3 23 23 H 1.08994 * 109.46994 * 299.87352 * 1 2 3 24 24 H 1.08999 * 110.40847 * 82.18408 * 3 2 1 25 25 H 1.08998 * 110.51239 * 319.78724 * 3 2 1 26 26 H 1.09002 * 110.32510 * 264.95524 * 4 3 2 27 27 H 1.09001 * 110.32715 * 142.75291 * 4 3 2 28 28 H 1.08002 * 126.45423 * 179.97438 * 9 8 7 29 29 H 0.96999 * 120.00113 * 179.97438 * 14 13 11 30 30 H 1.09003 * 110.41121 * 40.26433 * 20 2 1 31 31 H 1.08998 * 110.41499 * 277.82073 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2501 -0.5345 5 6 3.4433 -0.0538 -1.3586 6 1 4.1497 -0.7686 -0.9363 7 6 3.7894 0.2356 -2.7964 8 7 3.1097 1.0213 -3.5912 9 6 3.6952 1.0482 -4.7888 10 6 4.8098 0.2136 -4.7186 11 6 5.7167 -0.0635 -5.7465 12 1 6.5463 -0.7316 -5.5691 13 6 5.5487 0.5261 -7.0071 14 7 4.5442 1.3357 -7.2218 15 14 6.7597 0.1554 -8.3803 16 1 6.7566 -1.3025 -8.6628 17 1 6.3632 0.8980 -9.6036 18 1 8.1221 0.5765 -7.9659 19 8 4.8401 -0.2732 -3.4547 20 6 2.0014 -0.5953 -1.2527 21 1 -0.3632 0.5158 -0.8888 22 1 -0.3633 -1.0277 -0.0023 23 1 -0.3633 0.5118 0.8911 24 1 2.0079 1.7916 1.0121 25 1 1.4104 2.0229 -0.6591 26 1 4.1483 1.1749 0.2934 27 1 3.6937 2.0996 -1.1699 28 1 3.3654 1.6074 -5.6519 29 1 4.4282 1.7439 -8.0940 30 1 1.4098 -0.2712 -2.1089 31 1 2.0079 -1.6831 -1.1839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260933398.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:50 Heat of formation + Delta-G solvation = -14.797780 kcal Electronic energy + Delta-G solvation = -14968.449323 eV Core-core repulsion = 12442.746961 eV Total energy + Delta-G solvation = -2525.702362 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.09827 -39.76209 -36.06108 -34.91548 -33.54982 -31.03355 -29.90358 -27.35225 -25.94284 -23.15421 -22.74495 -22.07601 -20.69829 -19.58654 -17.81421 -17.07496 -16.77908 -16.69375 -15.74643 -15.34363 -15.11689 -14.42417 -14.16798 -14.05326 -13.62666 -13.10367 -13.08414 -12.73727 -12.59469 -12.39572 -12.35506 -12.18129 -12.00916 -11.65671 -11.56459 -11.38555 -10.80789 -9.57350 -9.38497 -8.82742 -6.63367 1.01096 1.36047 1.53461 1.61415 2.08839 2.35035 2.54640 3.04237 3.16835 3.61531 3.80737 3.96712 4.18040 4.35342 4.43002 4.56442 4.58436 4.73582 4.85342 4.88125 4.96017 4.99862 5.11719 5.15252 5.19096 5.37275 5.54179 5.75905 6.00634 6.13524 6.29297 6.44660 6.61742 7.64429 8.15374 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.070715 B = 0.006097 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.861061 B = 4591.207450 C = 4685.073609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.513 5.513 3 C 0.039 3.961 4 C -0.108 4.108 5 C 0.025 3.975 6 H 0.101 0.899 7 C 0.037 3.963 8 N -0.471 5.471 9 C -0.211 4.211 10 C 0.112 3.888 11 C -0.455 4.455 12 H 0.091 0.909 13 C 0.027 3.973 14 N -0.814 5.814 15 Si 1.023 2.977 16 H -0.254 1.254 17 H -0.259 1.259 18 H -0.254 1.254 19 O -0.259 6.259 20 C 0.050 3.950 21 H 0.018 0.982 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.109 0.891 25 H 0.034 0.966 26 H 0.098 0.902 27 H 0.050 0.950 28 H 0.180 0.820 29 H 0.299 0.701 30 H 0.031 0.969 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 -1.395 7.358 7.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.237 5.237 3 C -0.088 4.088 4 C -0.147 4.147 5 C 0.005 3.995 6 H 0.119 0.881 7 C -0.164 4.164 8 N -0.199 5.199 9 C -0.355 4.355 10 C 0.060 3.940 11 C -0.484 4.484 12 H 0.109 0.891 13 C -0.188 4.188 14 N -0.440 5.440 15 Si 0.840 3.160 16 H -0.178 1.178 17 H -0.182 1.182 18 H -0.178 1.178 19 O -0.151 6.151 20 C -0.079 4.079 21 H 0.037 0.963 22 H 0.097 0.903 23 H 0.108 0.892 24 H 0.127 0.873 25 H 0.052 0.948 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.196 0.804 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.889 -1.253 7.930 8.532 hybrid contribution 0.575 0.165 -1.827 1.923 sum -2.314 -1.088 6.102 6.616 Atomic orbital electron populations 1.22584 0.86760 1.02983 1.01291 1.65461 1.09471 1.15458 1.33274 1.23120 0.94047 0.89950 1.01729 1.22343 0.98179 0.95388 0.98750 1.19986 0.97685 0.99110 0.82726 0.88054 1.25664 0.89239 1.03410 0.98112 1.69464 1.29636 1.17559 1.03287 1.23990 1.00801 1.14184 0.96521 1.21204 0.97444 0.94000 0.81365 1.18855 1.09573 1.26441 0.93503 0.89056 1.27079 0.98113 0.92152 1.01493 1.69627 1.27131 1.21485 1.25754 0.84645 0.77029 0.79895 0.74407 1.17825 1.18236 1.17814 1.84316 1.45919 1.61385 1.23514 1.23067 0.93096 1.00336 0.91365 0.96291 0.90270 0.89185 0.87331 0.94804 0.88323 0.93120 0.80365 0.88989 0.95043 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.53 127.69 1.22 1.50 16 2 N -0.51 -14.57 5.66 -907.64 -5.14 -19.70 16 3 C 0.04 1.10 6.49 86.45 0.56 1.67 16 4 C -0.11 -3.52 6.64 31.49 0.21 -3.31 16 5 C 0.03 0.96 3.59 -10.64 -0.04 0.92 16 6 H 0.10 3.51 8.14 -2.38 -0.02 3.50 16 7 C 0.04 1.90 6.62 88.26 0.58 2.48 16 8 N -0.47 -26.36 10.91 -300.12 -3.27 -29.63 16 9 C -0.21 -12.75 10.89 84.75 0.92 -11.83 16 10 C 0.11 6.73 7.08 22.95 0.16 6.90 16 11 C -0.45 -25.29 9.45 23.13 0.22 -25.07 16 12 H 0.09 4.75 7.85 -2.92 -0.02 4.73 16 13 C 0.03 1.35 5.50 85.32 0.47 1.82 16 14 N -0.81 -42.35 10.32 21.87 0.23 -42.13 16 15 Si 1.02 36.56 29.56 68.60 2.03 38.58 16 16 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 17 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 18 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 19 O -0.26 -14.70 10.81 -11.76 -0.13 -14.83 16 20 C 0.05 1.72 6.03 86.45 0.52 2.24 16 21 H 0.02 0.48 7.97 -2.39 -0.02 0.47 16 22 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.03 1.04 7.97 -2.39 -0.02 1.02 16 26 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.05 1.92 7.70 -2.39 -0.02 1.90 16 28 H 0.18 11.03 5.76 -2.91 -0.02 11.01 16 29 H 0.30 13.68 8.30 -92.71 -0.77 12.91 16 30 H 0.03 1.26 7.37 -2.39 -0.02 1.24 16 31 H 0.09 2.87 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -66.00 262.16 -0.34 -66.34 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 1.12 Total: 24.06 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 4.83 Total: -22.69 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -8.18 Total: -91.46 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.13 Total: -14.83 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.58 kcal Total: -66.00 -0.34 -66.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933398.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.542 kcal (2) G-P(sol) polarization free energy of solvation -66.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds