Wall clock time and date at job start Mon Mar 30 2020 02:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.42424 * 2 1 4 4 C 1.53031 * 109.37550 * 240.14189 * 2 1 3 5 5 C 1.53400 * 109.71297 * 168.22501 * 4 2 1 6 6 C 1.50891 * 108.18712 * 50.57312 * 5 4 2 7 7 C 1.34568 * 128.32636 * 163.26948 * 6 5 4 8 8 N 1.35192 * 107.62017 * 180.16391 * 7 6 5 9 9 H 0.97000 * 126.00797 * 179.97438 * 8 7 6 10 10 N 1.40318 * 107.99231 * 359.97070 * 8 7 6 11 11 C 1.30128 * 108.12251 * 359.96360 * 10 8 7 12 12 C 1.50945 * 128.28914 * 180.10531 * 11 10 8 13 13 O 1.42897 * 109.71612 * 43.61660 * 12 11 10 14 14 C 1.50700 * 109.75339 * 282.99143 * 12 11 10 15 15 H 1.07998 * 120.00263 * 241.23034 * 14 12 11 16 16 C 1.37875 * 119.99971 * 61.22457 * 14 12 11 17 17 N 1.31519 * 120.00151 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00229 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47027 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47214 * 120.00158 * 18 16 14 21 21 H 1.48499 * 109.47277 * 240.00226 * 18 16 14 22 22 H 1.09000 * 109.46956 * 299.99838 * 1 2 3 23 23 H 1.08995 * 109.46703 * 60.00215 * 1 2 3 24 24 H 1.09002 * 109.46662 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.42912 * 288.31253 * 4 2 1 26 26 H 1.08994 * 109.42846 * 48.16400 * 4 2 1 27 27 H 1.08996 * 109.74258 * 290.88772 * 5 4 2 28 28 H 1.09000 * 109.69618 * 170.23056 * 5 4 2 29 29 H 1.08002 * 126.19184 * 0.14808 * 7 6 5 30 30 H 0.96705 * 113.99913 * 298.74839 * 13 12 11 31 31 H 0.96994 * 120.00043 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8925 1.0280 0.0000 4 6 2.0377 -0.7187 -1.2520 5 6 3.5430 -0.4727 -1.4153 6 6 4.2176 -0.7934 -0.1042 7 6 5.5238 -1.0174 0.1293 8 7 5.6662 -1.2687 1.4500 9 1 6.4990 -1.4658 1.9065 10 7 4.3974 -1.1942 2.0446 11 6 3.5314 -0.9090 1.1162 12 6 2.0401 -0.7207 1.2541 13 8 1.7589 0.0687 2.4116 14 6 1.3665 -2.0631 1.3784 15 1 0.6450 -2.3758 0.6381 16 6 1.6715 -2.8920 2.4371 17 7 2.5499 -2.5110 3.3388 18 14 0.8362 -4.5556 2.5915 19 1 -0.1039 -4.7447 1.4576 20 1 1.8622 -5.6289 2.5675 21 1 0.0865 -4.6161 3.8720 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8533 -1.7886 -1.1557 26 1 1.5112 -0.3381 -2.1272 27 1 3.7195 0.5713 -1.6740 28 1 3.9379 -1.1184 -2.1997 29 1 6.3152 -1.0000 -0.6054 30 1 2.0558 -0.3299 3.2411 31 1 2.7641 -3.0940 4.0837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260935237.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:20 Heat of formation + Delta-G solvation = 18.439705 kcal Electronic energy + Delta-G solvation = -16098.596778 eV Core-core repulsion = 13574.335702 eV Total energy + Delta-G solvation = -2524.261077 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.29098 -36.95794 -34.13461 -31.96163 -30.82080 -29.99514 -27.43391 -26.24735 -24.02198 -22.23616 -19.82666 -19.64769 -18.13917 -16.74619 -16.24922 -14.98525 -14.46447 -14.04701 -13.58015 -13.33106 -12.76478 -12.58880 -12.50275 -11.78416 -11.48478 -11.20574 -11.08774 -10.87947 -10.56679 -10.33125 -10.24429 -9.89541 -9.67215 -9.31531 -9.08912 -8.49819 -8.27168 -7.90080 -7.38745 -5.99261 -4.13897 3.00116 3.28252 3.36784 3.40008 3.97347 4.09209 4.42018 5.23662 5.52365 5.63723 5.74358 5.78912 6.18097 6.20774 6.36462 6.45308 6.52358 6.59317 6.72695 6.79545 6.84482 6.99249 7.11582 7.23464 7.34810 7.51659 7.86271 7.97377 8.22848 8.35641 8.84522 9.10191 9.51902 9.64252 10.99724 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023798 B = 0.015489 C = 0.011912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.307905 B = 1807.260266 C = 2349.998674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 H 0.052 0.948 4 C -0.106 4.106 5 C -0.034 4.034 6 C -0.244 4.244 7 C 0.022 3.978 8 N -0.518 5.518 9 H 0.422 0.578 10 N -0.221 5.221 11 C 0.096 3.904 12 C 0.330 3.670 13 O -0.587 6.587 14 C -0.534 4.534 15 H 0.070 0.930 16 C 0.069 3.931 17 N -0.855 5.855 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.283 1.283 22 H 0.054 0.946 23 H 0.030 0.970 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.154 0.846 30 H 0.385 0.615 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.174 2.309 -6.589 7.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.084 4.084 3 H 0.070 0.930 4 C -0.144 4.144 5 C -0.072 4.072 6 C -0.256 4.256 7 C -0.122 4.122 8 N -0.224 5.224 9 H 0.263 0.737 10 N -0.040 5.040 11 C -0.075 4.075 12 C 0.288 3.712 13 O -0.396 6.396 14 C -0.572 4.572 15 H 0.088 0.912 16 C -0.137 4.137 17 N -0.492 5.492 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.209 1.209 22 H 0.073 0.927 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.171 0.829 30 H 0.236 0.764 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.198 2.425 -5.625 6.910 hybrid contribution 0.582 -1.551 -0.108 1.660 sum 3.779 0.873 -5.734 6.922 Atomic orbital electron populations 1.21709 0.95406 1.02105 0.99553 1.20900 0.95590 0.97918 0.93982 0.92985 1.21579 0.94188 1.02084 0.96536 1.19895 0.95108 0.99363 0.92847 1.20148 0.92558 1.15759 0.97154 1.21694 0.97777 1.04978 0.87788 1.46882 1.09854 1.59725 1.05974 0.73704 1.77699 0.86380 1.20457 1.19492 1.23797 0.98535 0.95598 0.89620 1.17094 0.81708 0.89208 0.83218 1.86100 1.84329 1.50682 1.18484 1.21580 1.24190 1.01600 1.09868 0.91238 1.25103 0.94346 0.98163 0.96051 1.69746 1.30306 1.37007 1.12128 0.86557 0.79378 0.84061 0.78090 1.19661 1.21344 1.20937 0.92680 0.95073 0.91788 0.90783 0.92980 0.92674 0.92612 0.82876 0.76412 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.70 37.16 0.32 -2.27 16 2 C -0.06 -1.40 2.12 -90.41 -0.19 -1.59 16 3 H 0.05 1.12 8.10 -51.93 -0.42 0.70 16 4 C -0.11 -2.01 5.14 -26.51 -0.14 -2.15 16 5 C -0.03 -0.60 6.28 -27.58 -0.17 -0.78 16 6 C -0.24 -5.22 5.89 -104.98 -0.62 -5.83 16 7 C 0.02 0.42 11.95 -17.37 -0.21 0.21 16 8 N -0.52 -10.41 7.37 30.35 0.22 -10.18 16 9 H 0.42 6.82 8.96 -182.43 -1.64 5.18 16 10 N -0.22 -5.59 10.73 33.75 0.36 -5.23 16 11 C 0.10 2.41 5.53 -82.35 -0.46 1.96 16 12 C 0.33 8.38 0.56 -92.61 -0.05 8.33 16 13 O -0.59 -15.92 12.73 -35.23 -0.45 -16.37 16 14 C -0.53 -14.27 6.73 -34.44 -0.23 -14.50 16 15 H 0.07 1.82 5.81 -52.49 -0.31 1.52 16 16 C 0.07 1.86 5.23 -17.82 -0.09 1.76 16 17 N -0.85 -23.65 9.36 55.43 0.52 -23.13 16 18 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H 0.05 1.14 7.98 -51.93 -0.41 0.73 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 1.31 6.14 -51.93 -0.32 1.00 16 25 H 0.07 1.53 7.07 -51.93 -0.37 1.16 16 26 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.15 2.14 8.06 -52.49 -0.42 1.71 16 30 H 0.38 10.83 7.12 45.56 0.32 11.15 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 249.23 15.07 3.76 3.76 Total: -1.00 -30.51 249.23 -6.83 -37.34 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -4.38 Total: 12.54 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -1.84 Total: -14.86 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 1.10 Total: -38.55 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.45 Total: -16.37 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.51 -6.83 -37.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935237.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.782 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds