Wall clock time and date at job start Mon Mar 30 2020 02:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.42424 * 2 1 4 4 C 1.53031 * 109.37550 * 240.14189 * 2 1 3 5 5 C 1.53400 * 109.71297 * 168.22501 * 4 2 1 6 6 C 1.50891 * 108.18712 * 50.57312 * 5 4 2 7 7 C 1.34568 * 128.32636 * 163.26948 * 6 5 4 8 8 N 1.35192 * 107.62017 * 180.16391 * 7 6 5 9 9 H 0.97000 * 126.00797 * 179.97438 * 8 7 6 10 10 N 1.40318 * 107.99231 * 359.97070 * 8 7 6 11 11 C 1.30128 * 108.12251 * 359.96360 * 10 8 7 12 12 C 1.50945 * 128.28914 * 180.10531 * 11 10 8 13 13 O 1.42897 * 109.71612 * 43.61660 * 12 11 10 14 14 C 1.50700 * 109.75339 * 282.99143 * 12 11 10 15 15 H 1.07998 * 120.00263 * 241.23034 * 14 12 11 16 16 C 1.37875 * 119.99971 * 61.22457 * 14 12 11 17 17 N 1.31519 * 120.00151 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00229 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47027 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47214 * 120.00158 * 18 16 14 21 21 H 1.48499 * 109.47277 * 240.00226 * 18 16 14 22 22 H 1.09000 * 109.46956 * 299.99838 * 1 2 3 23 23 H 1.08995 * 109.46703 * 60.00215 * 1 2 3 24 24 H 1.09002 * 109.46662 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.42912 * 288.31253 * 4 2 1 26 26 H 1.08994 * 109.42846 * 48.16400 * 4 2 1 27 27 H 1.08996 * 109.74258 * 290.88772 * 5 4 2 28 28 H 1.09000 * 109.69618 * 170.23056 * 5 4 2 29 29 H 1.08002 * 126.19184 * 0.14808 * 7 6 5 30 30 H 0.96705 * 113.99913 * 298.74839 * 13 12 11 31 31 H 0.96994 * 120.00043 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8925 1.0280 0.0000 4 6 2.0377 -0.7187 -1.2520 5 6 3.5430 -0.4727 -1.4153 6 6 4.2176 -0.7934 -0.1042 7 6 5.5238 -1.0174 0.1293 8 7 5.6662 -1.2687 1.4500 9 1 6.4990 -1.4658 1.9065 10 7 4.3974 -1.1942 2.0446 11 6 3.5314 -0.9090 1.1162 12 6 2.0401 -0.7207 1.2541 13 8 1.7589 0.0687 2.4116 14 6 1.3665 -2.0631 1.3784 15 1 0.6450 -2.3758 0.6381 16 6 1.6715 -2.8920 2.4371 17 7 2.5499 -2.5110 3.3388 18 14 0.8362 -4.5556 2.5915 19 1 -0.1039 -4.7447 1.4576 20 1 1.8622 -5.6289 2.5675 21 1 0.0865 -4.6161 3.8720 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8533 -1.7886 -1.1557 26 1 1.5112 -0.3381 -2.1272 27 1 3.7195 0.5713 -1.6740 28 1 3.9379 -1.1184 -2.1997 29 1 6.3152 -1.0000 -0.6054 30 1 2.0558 -0.3299 3.2411 31 1 2.7641 -3.0940 4.0837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260935237.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:20 Heat of formation + Delta-G solvation = -3.839611 kcal Electronic energy + Delta-G solvation = -16099.562882 eV Core-core repulsion = 13574.335702 eV Total energy + Delta-G solvation = -2525.227180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.92050 -38.71497 -35.90804 -34.01835 -32.41024 -31.70521 -29.06390 -28.07239 -25.85829 -23.76907 -21.51119 -21.28340 -19.93345 -18.47119 -17.99850 -16.95435 -16.27769 -15.71542 -15.29757 -15.01543 -14.34712 -14.22349 -14.13000 -13.45778 -13.31729 -13.03200 -12.76511 -12.63250 -12.31849 -12.09296 -11.95040 -11.51706 -11.41593 -11.05862 -10.80585 -10.47259 -10.16342 -9.72566 -8.94289 -8.00654 -6.21011 1.37906 1.41238 1.47306 1.51433 2.32643 2.46347 2.50006 3.20791 3.99548 4.04408 4.28548 4.31258 4.64199 4.72796 4.80796 4.90514 4.94369 5.11251 5.17458 5.23916 5.31647 5.43437 5.53856 5.61040 5.67950 5.77410 5.93858 6.23318 6.27283 6.80297 6.94166 7.33997 7.50126 7.53863 8.95515 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023798 B = 0.015489 C = 0.011912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.307905 B = 1807.260266 C = 2349.998674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.067 4.067 3 H 0.048 0.952 4 C -0.101 4.101 5 C -0.029 4.029 6 C -0.275 4.275 7 C 0.045 3.955 8 N -0.512 5.512 9 H 0.437 0.563 10 N -0.273 5.273 11 C 0.066 3.934 12 C 0.311 3.689 13 O -0.600 6.600 14 C -0.543 4.543 15 H 0.068 0.932 16 C 0.022 3.978 17 N -0.873 5.873 18 Si 0.948 3.052 19 H -0.265 1.265 20 H -0.291 1.291 21 H -0.282 1.282 22 H 0.035 0.965 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.209 0.791 30 H 0.374 0.626 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.910 2.254 -8.910 9.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.086 4.086 3 H 0.066 0.934 4 C -0.139 4.139 5 C -0.067 4.067 6 C -0.287 4.287 7 C -0.100 4.100 8 N -0.220 5.220 9 H 0.281 0.719 10 N -0.094 5.094 11 C -0.104 4.104 12 C 0.270 3.730 13 O -0.408 6.408 14 C -0.582 4.582 15 H 0.086 0.914 16 C -0.180 4.180 17 N -0.511 5.511 18 Si 0.774 3.226 19 H -0.189 1.189 20 H -0.218 1.218 21 H -0.208 1.208 22 H 0.054 0.946 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.226 0.774 30 H 0.223 0.777 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.928 2.375 -7.958 9.187 hybrid contribution 0.420 -1.495 0.621 1.672 sum 4.348 0.880 -7.337 8.574 Atomic orbital electron populations 1.21649 0.94561 1.01558 1.00442 1.20970 0.96409 0.97533 0.93693 0.93371 1.21544 0.95711 1.00351 0.96268 1.19976 0.93785 1.01141 0.91848 1.20661 0.93543 1.17040 0.97471 1.22462 0.98313 1.01657 0.87610 1.46857 1.09254 1.59029 1.06894 0.71898 1.77558 0.88359 1.22142 1.21310 1.23847 0.98417 0.96609 0.91535 1.17471 0.82868 0.89006 0.83638 1.86086 1.84609 1.51274 1.18800 1.21812 1.24190 1.02420 1.09729 0.91433 1.25772 0.95064 1.01079 0.96123 1.69898 1.31293 1.37564 1.12312 0.85676 0.78373 0.80434 0.78076 1.18914 1.21782 1.20850 0.94602 0.91335 0.92960 0.93029 0.89404 0.90732 0.89846 0.77416 0.77660 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 8.70 71.98 0.63 -4.23 16 2 C -0.07 -2.83 2.12 -10.66 -0.02 -2.85 16 3 H 0.05 2.04 8.10 -2.39 -0.02 2.02 16 4 C -0.10 -3.58 5.14 30.74 0.16 -3.42 16 5 C -0.03 -0.95 6.28 30.04 0.19 -0.76 16 6 C -0.28 -11.16 5.89 -20.10 -0.12 -11.28 16 7 C 0.04 1.52 11.95 83.33 1.00 2.52 16 8 N -0.51 -19.79 7.37 -57.89 -0.43 -20.22 16 9 H 0.44 13.42 8.96 -213.18 -1.91 11.51 16 10 N -0.27 -13.92 10.73 -47.14 -0.51 -14.43 16 11 C 0.07 3.34 5.53 43.44 0.24 3.58 16 12 C 0.31 16.03 0.56 -12.08 -0.01 16.02 16 13 O -0.60 -33.74 12.73 -148.98 -1.90 -35.63 16 14 C -0.54 -29.45 6.73 25.60 0.17 -29.28 16 15 H 0.07 3.58 5.81 -2.91 -0.02 3.57 16 16 C 0.02 1.23 5.23 84.65 0.44 1.67 16 17 N -0.87 -49.67 9.36 21.45 0.20 -49.47 16 18 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H 0.03 1.48 7.98 -2.39 -0.02 1.46 16 23 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.05 2.12 6.14 -2.39 -0.01 2.11 16 25 H 0.05 2.05 7.07 -2.39 -0.02 2.03 16 26 H 0.09 2.45 8.09 -2.39 -0.02 2.43 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.21 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.37 22.13 7.12 -74.05 -0.53 21.61 16 31 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -67.62 249.23 0.80 -66.82 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: -1.28 Total: 34.82 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 2.68 Total: -28.03 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -0.73 Total: -84.12 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.90 Total: -35.63 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -67.62 0.80 -66.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935237.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.980 kcal (2) G-P(sol) polarization free energy of solvation -67.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds