Wall clock time and date at job start Mon Mar 30 2020 02:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.42784 * 2 1 4 4 C 1.53030 * 109.38060 * 119.85652 * 2 1 3 5 5 C 1.53383 * 109.72485 * 191.77545 * 4 2 1 6 6 C 1.50881 * 108.19515 * 309.45661 * 5 4 2 7 7 C 1.34568 * 128.32654 * 196.96058 * 6 5 4 8 8 N 1.35201 * 107.61998 * 179.97438 * 7 6 5 9 9 H 0.96999 * 126.00304 * 179.97438 * 8 7 6 10 10 N 1.40307 * 107.98776 * 359.67733 * 8 7 6 11 11 C 1.30126 * 108.12839 * 0.22841 * 10 8 7 12 12 C 1.50948 * 128.28909 * 179.83552 * 11 10 8 13 13 O 1.42895 * 109.72040 * 77.09793 * 12 11 10 14 14 C 1.50701 * 109.71600 * 316.45595 * 12 11 10 15 15 H 1.07993 * 120.00324 * 146.63758 * 14 12 11 16 16 C 1.37880 * 119.99805 * 326.63586 * 14 12 11 17 17 N 1.31515 * 119.99732 * 164.65450 * 16 14 12 18 18 Si 1.86802 * 119.99958 * 344.65053 * 16 14 12 19 19 H 1.48506 * 109.46671 * 93.11876 * 18 16 14 20 20 H 1.48502 * 109.47261 * 213.11178 * 18 16 14 21 21 H 1.48489 * 109.47251 * 333.11563 * 18 16 14 22 22 H 1.08998 * 109.47484 * 179.88249 * 1 2 3 23 23 H 1.09001 * 109.47397 * 299.88589 * 1 2 3 24 24 H 1.09002 * 109.47422 * 59.88853 * 1 2 3 25 25 H 1.08998 * 109.42658 * 311.85997 * 4 2 1 26 26 H 1.09001 * 109.42229 * 71.69702 * 4 2 1 27 27 H 1.09007 * 109.71393 * 69.13428 * 5 4 2 28 28 H 1.08999 * 109.72020 * 189.77709 * 5 4 2 29 29 H 1.08006 * 126.19030 * 359.80462 * 7 6 5 30 30 H 0.96700 * 114.00240 * 300.00559 * 13 12 11 31 31 H 0.97006 * 119.99728 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8925 1.0280 0.0000 4 6 2.0377 -0.7187 1.2520 5 6 3.5429 -0.4727 1.4154 6 6 4.2176 -0.7927 0.1044 7 6 5.5232 -1.0207 -0.1284 8 7 5.6665 -1.2663 -1.4502 9 1 6.4994 -1.4638 -1.9065 10 7 4.3978 -1.1922 -2.0447 11 6 3.5315 -0.9085 -1.1161 12 6 2.0402 -0.7199 -1.2542 13 8 1.4021 -1.9930 -1.3722 14 6 1.7440 0.1131 -2.4746 15 1 0.8455 -0.0667 -3.0461 16 6 2.6201 1.1050 -2.8615 17 7 2.5345 1.6246 -4.0666 18 14 3.9287 1.7107 -1.6739 19 1 5.1856 0.9507 -1.8928 20 1 4.1774 3.1561 -1.9065 21 1 3.4634 1.5067 -0.2786 22 1 -0.3634 -1.0276 -0.0021 23 1 -0.3634 0.5121 0.8910 24 1 -0.3634 0.5156 -0.8890 25 1 1.5110 -0.3383 2.1271 26 1 1.8535 -1.7886 1.1556 27 1 3.7189 0.5714 1.6745 28 1 3.9380 -1.1184 2.1996 29 1 6.3141 -1.0070 0.6070 30 1 1.6940 -2.5101 -2.1355 31 1 3.1511 2.3222 -4.3389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260935238.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:22 Heat of formation + Delta-G solvation = 37.129284 kcal Electronic energy + Delta-G solvation = -16360.750583 eV Core-core repulsion = 13837.299948 eV Total energy + Delta-G solvation = -2523.450636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.05918 -37.33045 -34.24133 -32.51242 -30.98958 -30.64812 -27.94025 -26.64363 -23.83716 -22.23859 -20.15572 -20.04030 -18.61221 -17.08438 -16.68037 -15.47941 -14.94242 -14.14803 -13.98492 -13.46586 -13.14750 -12.75411 -12.47031 -12.36055 -11.98878 -11.35978 -11.27982 -10.85653 -10.69416 -10.42530 -10.11969 -9.93942 -9.66172 -9.57719 -9.18778 -8.71177 -8.49821 -8.21019 -7.75093 -6.08766 -4.09786 2.54370 3.29947 3.36838 3.49526 3.55420 3.57495 4.50604 5.18731 5.19533 5.34772 5.50561 5.69158 5.76730 5.94394 6.18351 6.19206 6.28472 6.36825 6.44775 6.57852 6.69726 6.78683 6.79804 7.12730 7.25698 7.36814 7.44724 7.63842 7.89377 8.37887 8.55536 8.73797 9.03384 9.59891 11.01705 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.021514 C = 0.015028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.274016 B = 1301.141883 C = 1862.739795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.078 4.078 3 H 0.080 0.920 4 C -0.115 4.115 5 C -0.039 4.039 6 C -0.232 4.232 7 C 0.035 3.965 8 N -0.495 5.495 9 H 0.430 0.570 10 N -0.244 5.244 11 C 0.064 3.936 12 C 0.315 3.685 13 O -0.564 6.564 14 C -0.548 4.548 15 H 0.083 0.917 16 C 0.096 3.904 17 N -0.883 5.883 18 Si 0.851 3.149 19 H -0.270 1.270 20 H -0.309 1.309 21 H -0.235 1.235 22 H 0.053 0.947 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.165 0.835 30 H 0.368 0.632 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -4.228 10.164 11.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.097 4.097 3 H 0.098 0.902 4 C -0.152 4.152 5 C -0.077 4.077 6 C -0.244 4.244 7 C -0.110 4.110 8 N -0.203 5.203 9 H 0.273 0.727 10 N -0.067 5.067 11 C -0.105 4.105 12 C 0.272 3.728 13 O -0.368 6.368 14 C -0.585 4.585 15 H 0.101 0.899 16 C -0.109 4.109 17 N -0.519 5.519 18 Si 0.680 3.320 19 H -0.195 1.195 20 H -0.238 1.238 21 H -0.160 1.160 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.182 0.818 30 H 0.214 0.786 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.590 -4.143 9.359 11.217 hybrid contribution 1.789 0.481 0.502 1.919 sum 6.378 -3.662 9.861 12.302 Atomic orbital electron populations 1.21544 0.95079 1.01348 1.00433 1.21508 0.96194 0.99446 0.92539 0.90178 1.21693 0.94071 1.01441 0.98014 1.20005 0.95346 1.00096 0.92247 1.20206 0.92633 1.14170 0.97395 1.21819 0.98038 1.03861 0.87301 1.46508 1.09198 1.58718 1.05886 0.72734 1.77214 0.87651 1.21334 1.20463 1.23758 0.99552 0.97601 0.89632 1.17606 0.78274 0.82353 0.94562 1.86296 1.67840 1.31334 1.51308 1.21235 1.09560 1.18036 1.09643 0.89857 1.24887 0.96129 0.95744 0.94142 1.69985 1.37848 1.26997 1.17073 0.87525 0.83731 0.76590 0.84130 1.19544 1.23802 1.15993 0.92798 0.94777 0.91791 0.92796 0.91610 0.91951 0.92195 0.81794 0.78578 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.77 37.15 0.33 -2.18 16 2 C -0.08 -1.67 1.65 -90.43 -0.15 -1.81 16 3 H 0.08 1.83 5.03 -51.93 -0.26 1.57 16 4 C -0.11 -2.07 5.16 -26.52 -0.14 -2.20 16 5 C -0.04 -0.66 5.82 -27.60 -0.16 -0.82 16 6 C -0.23 -4.59 3.90 -104.99 -0.41 -5.00 16 7 C 0.03 0.59 11.33 -17.37 -0.20 0.39 16 8 N -0.49 -9.10 6.31 30.35 0.19 -8.91 16 9 H 0.43 6.22 8.96 -182.44 -1.64 4.58 16 10 N -0.24 -5.68 10.65 33.75 0.36 -5.32 16 11 C 0.06 1.48 3.21 -82.35 -0.26 1.22 16 12 C 0.31 7.51 0.53 -92.62 -0.05 7.46 16 13 O -0.56 -12.78 11.55 -35.23 -0.41 -13.19 16 14 C -0.55 -15.41 8.17 -34.44 -0.28 -15.70 16 15 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 16 C 0.10 2.79 5.14 -17.82 -0.09 2.70 16 17 N -0.88 -27.43 13.96 55.43 0.77 -26.66 16 18 Si 0.85 21.76 22.04 -169.99 -3.75 18.01 16 19 H -0.27 -6.77 4.97 56.52 0.28 -6.49 16 20 H -0.31 -8.23 7.11 56.52 0.40 -7.83 16 21 H -0.24 -5.56 3.25 56.52 0.18 -5.37 16 22 H 0.05 1.05 7.49 -51.93 -0.39 0.66 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 1.37 7.56 -51.93 -0.39 0.97 16 25 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 26 H 0.07 1.22 7.74 -51.93 -0.40 0.82 16 27 H 0.06 1.04 7.64 -51.92 -0.40 0.65 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.16 2.01 8.06 -52.48 -0.42 1.59 16 30 H 0.37 7.74 9.05 45.56 0.41 8.15 16 31 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 235.79 15.07 3.55 3.55 Total: -1.00 -33.29 235.79 -5.34 -38.62 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.65 Total: 9.83 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.41 Total: -15.94 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 1.32 Total: -40.89 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.41 Total: -13.19 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -3.75 Total: 18.01 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -33.29 -5.34 -38.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935238.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.754 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds