Wall clock time and date at job start Mon Mar 30 2020 02:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.42784 * 2 1 4 4 C 1.53030 * 109.38060 * 119.85652 * 2 1 3 5 5 C 1.53383 * 109.72485 * 191.77545 * 4 2 1 6 6 C 1.50881 * 108.19515 * 309.45661 * 5 4 2 7 7 C 1.34568 * 128.32654 * 196.96058 * 6 5 4 8 8 N 1.35201 * 107.61998 * 179.97438 * 7 6 5 9 9 H 0.96999 * 126.00304 * 179.97438 * 8 7 6 10 10 N 1.40307 * 107.98776 * 359.67733 * 8 7 6 11 11 C 1.30126 * 108.12839 * 0.22841 * 10 8 7 12 12 C 1.50948 * 128.28909 * 179.83552 * 11 10 8 13 13 O 1.42895 * 109.72040 * 77.09793 * 12 11 10 14 14 C 1.50701 * 109.71600 * 316.45595 * 12 11 10 15 15 H 1.07993 * 120.00324 * 146.63758 * 14 12 11 16 16 C 1.37880 * 119.99805 * 326.63586 * 14 12 11 17 17 N 1.31515 * 119.99732 * 164.65450 * 16 14 12 18 18 Si 1.86802 * 119.99958 * 344.65053 * 16 14 12 19 19 H 1.48506 * 109.46671 * 93.11876 * 18 16 14 20 20 H 1.48502 * 109.47261 * 213.11178 * 18 16 14 21 21 H 1.48489 * 109.47251 * 333.11563 * 18 16 14 22 22 H 1.08998 * 109.47484 * 179.88249 * 1 2 3 23 23 H 1.09001 * 109.47397 * 299.88589 * 1 2 3 24 24 H 1.09002 * 109.47422 * 59.88853 * 1 2 3 25 25 H 1.08998 * 109.42658 * 311.85997 * 4 2 1 26 26 H 1.09001 * 109.42229 * 71.69702 * 4 2 1 27 27 H 1.09007 * 109.71393 * 69.13428 * 5 4 2 28 28 H 1.08999 * 109.72020 * 189.77709 * 5 4 2 29 29 H 1.08006 * 126.19030 * 359.80462 * 7 6 5 30 30 H 0.96700 * 114.00240 * 300.00559 * 13 12 11 31 31 H 0.97006 * 119.99728 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8925 1.0280 0.0000 4 6 2.0377 -0.7187 1.2520 5 6 3.5429 -0.4727 1.4154 6 6 4.2176 -0.7927 0.1044 7 6 5.5232 -1.0207 -0.1284 8 7 5.6665 -1.2663 -1.4502 9 1 6.4994 -1.4638 -1.9065 10 7 4.3978 -1.1922 -2.0447 11 6 3.5315 -0.9085 -1.1161 12 6 2.0402 -0.7199 -1.2542 13 8 1.4021 -1.9930 -1.3722 14 6 1.7440 0.1131 -2.4746 15 1 0.8455 -0.0667 -3.0461 16 6 2.6201 1.1050 -2.8615 17 7 2.5345 1.6246 -4.0666 18 14 3.9287 1.7107 -1.6739 19 1 5.1856 0.9507 -1.8928 20 1 4.1774 3.1561 -1.9065 21 1 3.4634 1.5067 -0.2786 22 1 -0.3634 -1.0276 -0.0021 23 1 -0.3634 0.5121 0.8910 24 1 -0.3634 0.5156 -0.8890 25 1 1.5110 -0.3383 2.1271 26 1 1.8535 -1.7886 1.1556 27 1 3.7189 0.5714 1.6745 28 1 3.9380 -1.1184 2.1996 29 1 6.3141 -1.0070 0.6070 30 1 1.6940 -2.5101 -2.1355 31 1 3.1511 2.3222 -4.3389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260935238.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:22 Heat of formation + Delta-G solvation = 9.159591 kcal Electronic energy + Delta-G solvation = -16361.963440 eV Core-core repulsion = 13837.299948 eV Total energy + Delta-G solvation = -2524.663492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.57543 -39.01088 -35.85214 -34.65070 -32.51376 -32.31024 -29.55836 -28.37997 -25.64042 -23.75752 -21.75240 -21.66379 -20.23484 -18.87410 -18.37043 -17.32195 -16.64289 -15.75837 -15.65538 -15.05802 -14.79764 -14.68158 -14.08101 -13.98174 -13.59944 -13.04615 -12.80748 -12.54826 -12.43919 -12.12135 -11.95240 -11.67394 -11.39348 -11.24328 -10.93248 -10.60220 -10.29151 -10.12546 -9.18638 -8.33494 -6.37590 1.11400 1.33752 1.38396 1.47235 1.88323 2.16755 2.40493 3.03268 3.70935 3.85392 4.07769 4.24428 4.34633 4.57710 4.62268 4.76562 4.84274 4.93697 5.04183 5.17987 5.20250 5.27663 5.34952 5.48509 5.59440 5.71385 5.79237 5.86005 6.22398 6.58948 6.64423 6.93295 7.00412 7.39670 8.80221 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.021514 C = 0.015028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.274016 B = 1301.141883 C = 1862.739795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.038 4.038 6 C -0.258 4.258 7 C 0.062 3.938 8 N -0.485 5.485 9 H 0.446 0.554 10 N -0.300 5.300 11 C 0.041 3.959 12 C 0.310 3.690 13 O -0.565 6.565 14 C -0.546 4.546 15 H 0.034 0.966 16 C 0.041 3.959 17 N -0.937 5.937 18 Si 0.914 3.086 19 H -0.260 1.260 20 H -0.329 1.329 21 H -0.200 1.200 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.223 0.777 30 H 0.370 0.630 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -4.766 13.984 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.146 4.146 5 C -0.075 4.075 6 C -0.270 4.270 7 C -0.084 4.084 8 N -0.195 5.195 9 H 0.292 0.708 10 N -0.124 5.124 11 C -0.127 4.127 12 C 0.267 3.733 13 O -0.369 6.369 14 C -0.583 4.583 15 H 0.052 0.948 16 C -0.159 4.159 17 N -0.576 5.576 18 Si 0.741 3.259 19 H -0.185 1.185 20 H -0.259 1.259 21 H -0.123 1.123 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.050 0.950 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.239 0.761 30 H 0.217 0.783 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.714 -4.718 13.194 15.538 hybrid contribution 1.071 0.533 -0.784 1.430 sum 7.785 -4.185 12.411 15.236 Atomic orbital electron populations 1.21511 0.94579 1.01332 1.00634 1.21462 0.96803 0.98555 0.93249 0.91643 1.21641 0.95577 1.00523 0.96895 1.20121 0.94003 1.01523 0.91899 1.20612 0.93569 1.15548 0.97271 1.22666 0.98532 1.00104 0.87076 1.46545 1.08506 1.57649 1.06825 0.70833 1.77114 0.89768 1.23241 1.22269 1.23504 0.98630 0.98995 0.91566 1.17554 0.80222 0.81729 0.93748 1.86269 1.68162 1.31071 1.51359 1.21493 1.07392 1.18520 1.10930 0.94797 1.25721 0.98712 0.95930 0.95512 1.70144 1.39658 1.28336 1.19485 0.86555 0.81237 0.74332 0.83735 1.18529 1.25943 1.12334 0.92875 0.91215 0.94954 0.89577 0.92284 0.91048 0.88340 0.76051 0.78321 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.76 8.77 71.98 0.63 -4.13 16 2 C -0.08 -3.35 1.65 -10.67 -0.02 -3.36 16 3 H 0.07 2.85 5.03 -2.38 -0.01 2.84 16 4 C -0.11 -3.45 5.16 30.73 0.16 -3.30 16 5 C -0.04 -1.06 5.82 30.03 0.17 -0.89 16 6 C -0.26 -9.02 3.90 -20.10 -0.08 -9.10 16 7 C 0.06 1.75 11.33 83.33 0.94 2.69 16 8 N -0.48 -16.08 6.31 -57.88 -0.37 -16.45 16 9 H 0.45 11.30 8.96 -213.19 -1.91 9.39 16 10 N -0.30 -13.57 10.65 -47.14 -0.50 -14.08 16 11 C 0.04 1.82 3.21 43.44 0.14 1.96 16 12 C 0.31 14.80 0.53 -12.09 -0.01 14.79 16 13 O -0.56 -25.95 11.55 -148.98 -1.72 -27.67 16 14 C -0.55 -32.12 8.17 25.60 0.21 -31.91 16 15 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 16 C 0.04 2.44 5.14 84.66 0.44 2.88 16 17 N -0.94 -61.18 13.96 21.45 0.30 -60.88 16 18 Si 0.91 45.39 22.04 68.60 1.51 46.91 16 19 H -0.26 -12.34 4.97 99.48 0.49 -11.84 16 20 H -0.33 -17.17 7.11 99.48 0.71 -16.47 16 21 H -0.20 -8.75 3.25 99.48 0.32 -8.42 16 22 H 0.05 2.02 7.49 -2.39 -0.02 2.00 16 23 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.03 1.40 7.56 -2.39 -0.02 1.39 16 25 H 0.09 2.19 8.09 -2.39 -0.02 2.17 16 26 H 0.06 1.96 7.74 -2.39 -0.02 1.94 16 27 H 0.07 1.92 7.64 -2.38 -0.02 1.90 16 28 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.22 3.60 8.06 -2.91 -0.02 3.57 16 30 H 0.37 16.20 9.05 -74.06 -0.67 15.53 16 31 H 0.26 16.13 8.31 -92.70 -0.77 15.36 16 Total: -1.00 -76.55 235.79 -0.20 -76.75 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -2.02 Total: 25.78 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 2.59 Total: -30.37 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -0.57 Total: -91.40 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -1.72 Total: -27.67 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.51 Total: 46.91 kcal Total: -76.55 -0.20 -76.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935238.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.911 kcal (2) G-P(sol) polarization free energy of solvation -76.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds