Wall clock time and date at job start Mon Mar 30 2020 03:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40295 * 126.09482 * 2 1 4 4 C 1.31070 * 108.27216 * 180.10230 * 3 2 1 5 5 C 1.39296 * 108.07872 * 359.97438 * 4 3 2 6 6 C 1.34329 * 126.09016 * 180.02562 * 2 1 3 7 7 C 1.50821 * 128.03572 * 359.83932 * 6 2 1 8 8 C 1.53373 * 108.38530 * 196.60692 * 7 6 2 9 9 C 1.53102 * 109.50714 * 310.05886 * 8 7 6 10 10 C 1.50839 * 127.90037 * 179.97438 * 5 4 3 11 11 O 1.42901 * 109.71540 * 76.86194 * 10 5 4 12 12 C 1.50696 * 109.68204 * 316.32756 * 10 5 4 13 13 H 1.08004 * 119.99994 * 355.88788 * 12 10 5 14 14 C 1.37875 * 120.00186 * 175.89356 * 12 10 5 15 15 N 1.31512 * 120.00096 * 353.41851 * 14 12 10 16 16 Si 1.86799 * 120.00178 * 173.43009 * 14 12 10 17 17 H 1.48496 * 109.47323 * 89.99140 * 16 14 12 18 18 H 1.48504 * 109.47068 * 329.99255 * 16 14 12 19 19 H 1.48496 * 109.47209 * 209.99568 * 16 14 12 20 20 H 1.08993 * 109.47159 * 269.96125 * 1 2 3 21 21 H 1.09005 * 109.46886 * 29.96123 * 1 2 3 22 22 H 1.08999 * 109.46887 * 149.96062 * 1 2 3 23 23 H 1.07995 * 125.95963 * 179.97438 * 4 3 2 24 24 H 1.09000 * 109.68439 * 76.88683 * 7 6 2 25 25 H 1.09005 * 109.71706 * 316.34715 * 7 6 2 26 26 H 1.08997 * 109.46226 * 190.04715 * 8 7 6 27 27 H 1.08993 * 109.45402 * 70.06480 * 8 7 6 28 28 H 1.09004 * 109.46571 * 310.25281 * 9 8 7 29 29 H 1.09004 * 109.46405 * 190.27801 * 9 8 7 30 30 H 0.96698 * 114.00086 * 298.25813 * 11 10 5 31 31 H 0.97002 * 119.99856 * 4.74337 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1336 0.0000 4 6 3.5393 0.7325 -0.0022 5 6 3.5455 -0.6605 -0.0031 6 6 2.2562 -1.0855 -0.0005 7 6 1.8437 -2.5362 0.0022 8 6 3.0539 -3.3825 0.4164 9 6 4.2698 -2.9811 -0.4229 10 6 4.7399 -1.5817 -0.0061 11 8 5.3110 -1.6349 1.3027 12 6 5.7666 -1.0785 -0.9877 13 1 5.5489 -0.2182 -1.6033 14 6 6.9838 -1.7163 -1.1000 15 7 7.3004 -2.6807 -0.2638 16 14 8.1833 -1.2104 -2.4396 17 1 9.0730 -0.1373 -1.9279 18 1 7.4286 -0.7087 -3.6161 19 1 9.0017 -2.3831 -2.8399 20 1 -0.3633 -0.0007 1.0276 21 1 -0.3633 0.8904 -0.5133 22 1 -0.3633 -0.8896 -0.5144 23 1 4.4105 1.3706 -0.0032 24 1 1.5170 -2.8269 -0.9963 25 1 1.0306 -2.6860 0.7126 26 1 2.8323 -4.4372 0.2537 27 1 3.2697 -3.2152 1.4716 28 1 3.9964 -2.9740 -1.4781 29 1 5.0752 -3.6977 -0.2613 30 1 5.6387 -0.7836 1.6237 31 1 6.6517 -2.9902 0.3876 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260962603.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:12 Heat of formation + Delta-G solvation = -3.930210 kcal Electronic energy + Delta-G solvation = -15768.696917 eV Core-core repulsion = 13243.465808 eV Total energy + Delta-G solvation = -2525.231109 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.38415 -38.70571 -35.73915 -34.12285 -34.10842 -30.32715 -30.06659 -27.41730 -26.49110 -23.57441 -22.58343 -21.63383 -19.70094 -19.20867 -17.84544 -16.78040 -16.47359 -15.63788 -15.26467 -15.11438 -14.85346 -14.69615 -14.03332 -13.82607 -13.65659 -13.43148 -13.12318 -12.74057 -12.60548 -12.04389 -11.93562 -11.92621 -11.71904 -11.68680 -10.90312 -10.47831 -10.08848 -9.93560 -9.13270 -8.35296 -6.24379 0.93599 1.55600 1.62980 1.71707 1.80902 1.91983 2.62758 3.30765 3.67643 3.70108 3.98532 4.09122 4.16247 4.37333 4.41953 4.58109 4.65838 4.67330 4.76803 4.86008 4.88726 5.00680 5.21831 5.40554 5.45670 5.77555 5.84068 6.09264 6.26328 6.34153 6.77993 6.83993 7.27931 7.67269 8.97171 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.036381 B = 0.010366 C = 0.009080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.455295 B = 2700.594012 C = 3083.058302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.373 5.373 3 N -0.336 5.336 4 C 0.049 3.951 5 C -0.255 4.255 6 C 0.075 3.925 7 C -0.042 4.042 8 C -0.107 4.107 9 C -0.095 4.095 10 C 0.299 3.701 11 O -0.583 6.583 12 C -0.637 4.637 13 H 0.036 0.964 14 C -0.008 4.008 15 N -0.925 5.925 16 Si 1.105 2.895 17 H -0.277 1.277 18 H -0.279 1.279 19 H -0.284 1.284 20 H 0.088 0.912 21 H 0.093 0.907 22 H 0.111 0.889 23 H 0.176 0.824 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.040 0.960 30 H 0.359 0.641 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.221 0.667 0.002 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.156 5.156 3 N -0.159 5.159 4 C -0.134 4.134 5 C -0.267 4.267 6 C -0.054 4.054 7 C -0.080 4.080 8 C -0.145 4.145 9 C -0.133 4.133 10 C 0.259 3.741 11 O -0.388 6.388 12 C -0.675 4.675 13 H 0.054 0.946 14 C -0.211 4.211 15 N -0.563 5.563 16 Si 0.929 3.071 17 H -0.203 1.203 18 H -0.205 1.205 19 H -0.210 1.210 20 H 0.106 0.894 21 H 0.112 0.888 22 H 0.129 0.871 23 H 0.193 0.807 24 H 0.116 0.884 25 H 0.125 0.875 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.204 0.796 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.863 0.771 -0.628 12.902 hybrid contribution -0.375 0.517 0.619 0.890 sum -13.238 1.288 -0.009 13.300 Atomic orbital electron populations 1.22187 0.72079 1.05863 1.04613 1.48520 1.07568 1.02692 1.56846 1.77290 1.01666 1.08834 1.28072 1.23580 0.94939 0.95420 0.99467 1.20998 0.95865 0.94651 1.15156 1.21396 0.90756 0.92068 1.01223 1.20402 0.98747 0.85060 1.03818 1.21537 0.93675 0.99718 0.99585 1.21517 0.96839 0.96670 0.98277 1.17302 0.86177 0.90212 0.80375 1.86327 1.80925 1.35893 1.35665 1.22620 1.03345 1.16694 1.24842 0.94554 1.26857 0.99600 0.94301 1.00376 1.70697 1.38217 1.28332 1.19043 0.83086 0.74214 0.75993 0.73757 1.20321 1.20486 1.21003 0.89405 0.88814 0.87052 0.80742 0.88359 0.87460 0.89266 0.92883 0.93000 0.94113 0.79579 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.84 11.32 127.77 1.45 3.29 16 2 N -0.37 -12.54 4.00 -356.02 -1.43 -13.96 16 3 N -0.34 -13.42 12.59 -57.28 -0.72 -14.14 16 4 C 0.05 2.13 11.34 85.06 0.96 3.10 16 5 C -0.26 -11.45 5.03 -20.14 -0.10 -11.55 16 6 C 0.07 2.76 6.73 41.64 0.28 3.04 16 7 C -0.04 -1.18 5.83 30.01 0.17 -1.01 16 8 C -0.11 -3.71 5.88 30.75 0.18 -3.53 16 9 C -0.09 -4.36 4.56 30.76 0.14 -4.22 16 10 C 0.30 14.95 0.62 -12.11 -0.01 14.95 16 11 O -0.58 -30.12 10.66 -148.98 -1.59 -31.70 16 12 C -0.64 -35.51 7.94 25.60 0.20 -35.30 16 13 H 0.04 2.07 7.47 -2.91 -0.02 2.05 16 14 C -0.01 -0.46 5.24 84.65 0.44 -0.02 16 15 N -0.92 -55.67 13.10 21.45 0.28 -55.39 16 16 Si 1.11 50.70 29.91 68.60 2.05 52.75 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 22 H 0.11 1.56 7.90 -2.39 -0.02 1.55 16 23 H 0.18 7.32 8.06 -2.91 -0.02 7.29 16 24 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 26 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.05 2.00 7.77 -2.39 -0.02 1.98 16 28 H 0.05 2.39 8.08 -2.38 -0.02 2.37 16 29 H 0.04 2.08 6.30 -2.39 -0.02 2.07 16 30 H 0.36 17.48 9.04 -74.06 -0.67 16.81 16 31 H 0.28 17.15 4.66 -92.71 -0.43 16.72 16 Total: -1.00 -70.86 256.07 3.13 -67.74 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.81 Total: 25.95 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 3.73 Total: -31.25 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -1.87 Total: -83.49 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.59 Total: -31.70 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.75 kcal Total: -70.86 3.13 -67.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962603.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.806 kcal (2) G-P(sol) polarization free energy of solvation -70.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds